Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:34641462-35891131

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sox2ot 3 34560381 to 34677993 117612 + lncRNA gene SOX2 overlapping transcript (non-protein coding)
Cpgi13071 3 34641993 to 34642832 839 CpG island CpG island 13071
Tssr28820 3 34643115 to 34643120 5 + TSS region transcription start site region 28820
Gm42692 3 34643264 to 34646096 2832 + unclassified gene predicted gene 42692
Tssr32975 3 34648485 to 34648489 4 - TSS region transcription start site region 32975
Cpgi13072 3 34648719 to 34651529 2810 CpG island CpG island 13072
Tssr32976 3 34648952 to 34648963 11 - TSS region transcription start site region 32976
Tssr32977 3 34649724 to 34649735 11 - TSS region transcription start site region 32977
Tssr32978 3 34649756 to 34649769 13 - TSS region transcription start site region 32978
Tssr32979 3 34649847 to 34649875 28 - TSS region transcription start site region 32979
Tssr28821 3 34649923 to 34649934 11 + TSS region transcription start site region 28821
Tssr28822 3 34649987 to 34650005 18 + TSS region transcription start site region 28822
Tssr28823 3 34650024 to 34650050 26 + TSS region transcription start site region 28823
Tssr28824 3 34650174 to 34650189 15 + TSS region transcription start site region 28824
Tssr28825 3 34650222 to 34650233 11 + TSS region transcription start site region 28825
Sox2 3 34650405 to 34652461 2056 + protein coding gene SRY (sex determining region Y)-box 2
Tssr32980 3 34650714 to 34650720 6 - TSS region transcription start site region 32980
Tssr28826 3 34650766 to 34650780 14 + TSS region transcription start site region 28826
Tssr32981 3 34651036 to 34651047 11 - TSS region transcription start site region 32981
Tssr28827 3 34651071 to 34651082 11 + TSS region transcription start site region 28827
Gm27611 3 34653178 to 34653285 107 + unclassified non-coding RNA gene predicted gene, 27611
Tssr28828 3 34653586 to 34653593 7 + TSS region transcription start site region 28828
Tssr32982 3 34653989 to 34654008 19 - TSS region transcription start site region 32982
Cpgi13073 3 34661575 to 34661869 294 CpG island CpG island 13073
Cpgi13074 3 34662821 to 34664739 1918 CpG island CpG island 13074
Gm42693 3 34663659 to 34664289 630 - unclassified gene predicted gene 42693
Gm43206 3 34682633 to 34682746 113 + unclassified gene predicted gene 43206
Tssr28829 3 34684316 to 34684320 4 + TSS region transcription start site region 28829
Gm34941 3 34689378 to 34692921 3543 + lncRNA gene predicted gene, 34941
Cpgi13075 3 34692205 to 34692641 436 CpG island CpG island 13075
Tssr32983 3 34699450 to 34699456 6 - TSS region transcription start site region 32983
Gm3143 3 34699640 to 34716662 17022 - lincRNA gene predicted gene 3143
Tssr28830 3 34699945 to 34699947 2 + TSS region transcription start site region 28830
D3Nds55 3 34735381 to 34735538 157 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 55
Tssr28831 3 34757443 to 34757456 13 + TSS region transcription start site region 28831
Tssr32984 3 34757853 to 34757860 7 - TSS region transcription start site region 32984
Tssr32985 3 34757893 to 34757926 33 - TSS region transcription start site region 32985
Tssr32986 3 34757941 to 34757948 7 - TSS region transcription start site region 32986
Tssr32987 3 34757954 to 34757965 11 - TSS region transcription start site region 32987
Tssr28832 3 34758374 to 34758380 6 + TSS region transcription start site region 28832
Tssr28833 3 34760466 to 34760486 20 + TSS region transcription start site region 28833
Tssr32988 3 34761195 to 34761243 48 - TSS region transcription start site region 32988
Tssr32989 3 34761416 to 34761431 15 - TSS region transcription start site region 32989
Tssr28834 3 34764143 to 34764152 9 + TSS region transcription start site region 28834
Tssr28835 3 34764155 to 34764186 31 + TSS region transcription start site region 28835
Tssr28836 3 34764188 to 34764198 10 + TSS region transcription start site region 28836
Tssr28837 3 34764883 to 34764892 9 + TSS region transcription start site region 28837
Gm38509 3 34772075 to 34782346 10271 + lincRNA gene predicted gene, 38509
Tssr28838 3 34784126 to 34784131 5 + TSS region transcription start site region 28838
Tssr28839 3 34826605 to 34826646 41 + TSS region transcription start site region 28839
Tssr28840 3 34826651 to 34826658 7 + TSS region transcription start site region 28840
Tssr28841 3 34826666 to 34826671 5 + TSS region transcription start site region 28841
Gm21388 3 34826669 to 34879283 52614 + lincRNA gene predicted gene, 21388
Tssr32990 3 34861249 to 34861262 13 - TSS region transcription start site region 32990
D3Mit223 3 34913882 to 34914025 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 223
Mir6378 3 34922545 to 34922651 106 - miRNA gene microRNA 6378
Gm35255 3 34950227 to 34959531 9304 + lncRNA gene predicted gene, 35255
D3Mit331 3 34960436 to 34960547 111 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 331
Tssr28842 3 35113475 to 35113483 8 + TSS region transcription start site region 28842
Tssr28843 3 35113503 to 35113517 14 + TSS region transcription start site region 28843
Tgq13 3 35234019 to 35234019 0 QTL triglyceride QTL 13
1700017M07Rik 3 35256462 to 35276131 19669 - lincRNA gene RIKEN cDNA 1700017M07 gene
Gm35425 3 35318437 to 35330114 11677 + lncRNA gene predicted gene, 35425
Gm25442 3 35325614 to 35325705 91 + miRNA gene predicted gene, 25442
Gm38512 3 35337700 to 35405950 68250 - lncRNA gene predicted gene, 38512
Gm43078 3 35413833 to 35414000 167 + unclassified gene predicted gene 43078
Gm7733 3 35536882 to 35537701 819 - pseudogene predicted gene 7733
Tssr28844 3 35545880 to 35545883 3 + TSS region transcription start site region 28844
Ube2l3-ps1 3 35545894 to 35546329 435 + pseudogene ubiquitin-conjugating enzyme E2L 3, pseudogene 1
Gm6639 3 35597152 to 35666163 69011 - lincRNA gene predicted gene 6639
Tssr32991 3 35662288 to 35662299 11 - TSS region transcription start site region 32991
Tssr32992 3 35662320 to 35662325 5 - TSS region transcription start site region 32992
Tssr32993 3 35666159 to 35666173 14 - TSS region transcription start site region 32993
Tssr32994 3 35666193 to 35666201 8 - TSS region transcription start site region 32994
Tssr32995 3 35719649 to 35719659 10 - TSS region transcription start site region 32995
Tssr28845 3 35721257 to 35721266 9 + TSS region transcription start site region 28845
Tssr28846 3 35722085 to 35722096 11 + TSS region transcription start site region 28846
Tssr32996 3 35722934 to 35722945 11 - TSS region transcription start site region 32996
Tssr28847 3 35723055 to 35723078 23 + TSS region transcription start site region 28847
Gm25696 3 35735373 to 35735477 104 + snRNA gene predicted gene, 25696
Cpgi13076 3 35753796 to 35754903 1107 CpG island CpG island 13076
Tssr28848 3 35754089 to 35754114 25 + TSS region transcription start site region 28848
Atp11b 3 35754106 to 35856276 102170 + protein coding gene ATPase, class VI, type 11B
Tssr28849 3 35754121 to 35754135 14 + TSS region transcription start site region 28849
Tssr28850 3 35754155 to 35754166 11 + TSS region transcription start site region 28850
Tssr32997 3 35754410 to 35754421 11 - TSS region transcription start site region 32997
Tssr32998 3 35754430 to 35754457 27 - TSS region transcription start site region 32998
Tssr32999 3 35754474 to 35754483 9 - TSS region transcription start site region 32999
Tssr33000 3 35754509 to 35754516 7 - TSS region transcription start site region 33000
Tssr33001 3 35754639 to 35754641 2 - TSS region transcription start site region 33001
Tssr33002 3 35754733 to 35754749 16 - TSS region transcription start site region 33002
Tssr28851 3 35762273 to 35762323 50 + TSS region transcription start site region 28851
Tssr28852 3 35783022 to 35783060 38 + TSS region transcription start site region 28852
Tssr28853 3 35822581 to 35822585 4 + TSS region transcription start site region 28853
Gm43203 3 35845342 to 35845899 557 + unclassified gene predicted gene 43203
D3Mit239 3 35847656 to 35847856 200 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 239
Tssr28854 3 35855835 to 35855844 9 + TSS region transcription start site region 28854
1110021P09Rik 3 35861622 to 35862120 498 unclassified gene RIKEN cDNA 1110021P09 gene
Tssr28855 3 35863802 to 35863805 3 + TSS region transcription start site region 28855
Gm7741 3 35863877 to 35864865 988 + pseudogene predicted gene 7741
Gm20595 3 35875646 to 35883349 7703 - pseudogene predicted gene, 20595