Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:34570688-38380705

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388 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sox2ot 3 34560381 to 34677993 117612 + lncRNA gene SOX2 overlapping transcript (non-protein coding)
Gm42695 3 34565265 to 34572202 6937 - lincRNA gene predicted gene 42695
Tssr28813 3 34589917 to 34589954 37 + TSS region transcription start site region 28813
Tssr28814 3 34590027 to 34590031 4 + TSS region transcription start site region 28814
Gm42205 3 34598519 to 34602248 3729 - lincRNA gene predicted gene, 42205
Tssr28815 3 34599809 to 34599816 7 + TSS region transcription start site region 28815
Tssr32974 3 34620378 to 34620381 3 - TSS region transcription start site region 32974
Cpgi13069 3 34634625 to 34634893 268 CpG island CpG island 13069
Tssr28816 3 34638216 to 34638228 12 + TSS region transcription start site region 28816
Tssr28817 3 34638321 to 34638342 21 + TSS region transcription start site region 28817
Tssr28818 3 34638344 to 34638371 27 + TSS region transcription start site region 28818
Mir1897 3 34638464 to 34638542 78 + miRNA gene microRNA 1897
Tssr28819 3 34640220 to 34640225 5 + TSS region transcription start site region 28819
D3Mit168 3 34640701 to 34640804 103 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 168
Cpgi13070 3 34640778 to 34640938 160 CpG island CpG island 13070
Cpgi13071 3 34641993 to 34642832 839 CpG island CpG island 13071
Tssr28820 3 34643115 to 34643120 5 + TSS region transcription start site region 28820
Gm42692 3 34643264 to 34646096 2832 + unclassified gene predicted gene 42692
Tssr32975 3 34648485 to 34648489 4 - TSS region transcription start site region 32975
Cpgi13072 3 34648719 to 34651529 2810 CpG island CpG island 13072
Tssr32976 3 34648952 to 34648963 11 - TSS region transcription start site region 32976
Tssr32977 3 34649724 to 34649735 11 - TSS region transcription start site region 32977
Tssr32978 3 34649756 to 34649769 13 - TSS region transcription start site region 32978
Tssr32979 3 34649847 to 34649875 28 - TSS region transcription start site region 32979
Tssr28821 3 34649923 to 34649934 11 + TSS region transcription start site region 28821
Tssr28822 3 34649987 to 34650005 18 + TSS region transcription start site region 28822
Tssr28823 3 34650024 to 34650050 26 + TSS region transcription start site region 28823
Tssr28824 3 34650174 to 34650189 15 + TSS region transcription start site region 28824
Tssr28825 3 34650222 to 34650233 11 + TSS region transcription start site region 28825
Sox2 3 34650405 to 34652461 2056 + protein coding gene SRY (sex determining region Y)-box 2
Tssr32980 3 34650714 to 34650720 6 - TSS region transcription start site region 32980
Tssr28826 3 34650766 to 34650780 14 + TSS region transcription start site region 28826
Tssr32981 3 34651036 to 34651047 11 - TSS region transcription start site region 32981
Tssr28827 3 34651071 to 34651082 11 + TSS region transcription start site region 28827
Gm27611 3 34653178 to 34653285 107 + unclassified non-coding RNA gene predicted gene, 27611
Tssr28828 3 34653586 to 34653593 7 + TSS region transcription start site region 28828
Tssr32982 3 34653989 to 34654008 19 - TSS region transcription start site region 32982
Cpgi13073 3 34661575 to 34661869 294 CpG island CpG island 13073
Cpgi13074 3 34662821 to 34664739 1918 CpG island CpG island 13074
Gm42693 3 34663659 to 34664289 630 - unclassified gene predicted gene 42693
Gm43206 3 34682633 to 34682746 113 + unclassified gene predicted gene 43206
Tssr28829 3 34684316 to 34684320 4 + TSS region transcription start site region 28829
Gm34941 3 34689378 to 34692921 3543 + lncRNA gene predicted gene, 34941
Cpgi13075 3 34692205 to 34692641 436 CpG island CpG island 13075
Tssr32983 3 34699450 to 34699456 6 - TSS region transcription start site region 32983
Gm3143 3 34699640 to 34716662 17022 - lincRNA gene predicted gene 3143
Tssr28830 3 34699945 to 34699947 2 + TSS region transcription start site region 28830
D3Nds55 3 34735381 to 34735538 157 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 55
Tssr28831 3 34757443 to 34757456 13 + TSS region transcription start site region 28831
Tssr32984 3 34757853 to 34757860 7 - TSS region transcription start site region 32984
Tssr32985 3 34757893 to 34757926 33 - TSS region transcription start site region 32985
Tssr32986 3 34757941 to 34757948 7 - TSS region transcription start site region 32986
Tssr32987 3 34757954 to 34757965 11 - TSS region transcription start site region 32987
Tssr28832 3 34758374 to 34758380 6 + TSS region transcription start site region 28832
Tssr28833 3 34760466 to 34760486 20 + TSS region transcription start site region 28833
Tssr32988 3 34761195 to 34761243 48 - TSS region transcription start site region 32988
Tssr32989 3 34761416 to 34761431 15 - TSS region transcription start site region 32989
Tssr28834 3 34764143 to 34764152 9 + TSS region transcription start site region 28834
Tssr28835 3 34764155 to 34764186 31 + TSS region transcription start site region 28835
Tssr28836 3 34764188 to 34764198 10 + TSS region transcription start site region 28836
Tssr28837 3 34764883 to 34764892 9 + TSS region transcription start site region 28837
Gm38509 3 34772075 to 34782346 10271 + lincRNA gene predicted gene, 38509
Tssr28838 3 34784126 to 34784131 5 + TSS region transcription start site region 28838
Tssr28839 3 34826605 to 34826646 41 + TSS region transcription start site region 28839
Tssr28840 3 34826651 to 34826658 7 + TSS region transcription start site region 28840
Tssr28841 3 34826666 to 34826671 5 + TSS region transcription start site region 28841
Gm21388 3 34826669 to 34879283 52614 + lincRNA gene predicted gene, 21388
Tssr32990 3 34861249 to 34861262 13 - TSS region transcription start site region 32990
D3Mit223 3 34913882 to 34914025 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 223
Mir6378 3 34922545 to 34922651 106 - miRNA gene microRNA 6378
Gm35255 3 34950227 to 34959531 9304 + lncRNA gene predicted gene, 35255
D3Mit331 3 34960436 to 34960547 111 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 331
Tssr28842 3 35113475 to 35113483 8 + TSS region transcription start site region 28842
Tssr28843 3 35113503 to 35113517 14 + TSS region transcription start site region 28843
Tgq13 3 35234019 to 35234019 0 QTL triglyceride QTL 13
1700017M07Rik 3 35256462 to 35276131 19669 - lincRNA gene RIKEN cDNA 1700017M07 gene
Gm35425 3 35318437 to 35330114 11677 + lncRNA gene predicted gene, 35425
Gm25442 3 35325614 to 35325705 91 + miRNA gene predicted gene, 25442
Gm38512 3 35337700 to 35405950 68250 - lncRNA gene predicted gene, 38512
Gm43078 3 35413833 to 35414000 167 + unclassified gene predicted gene 43078
Gm7733 3 35536882 to 35537701 819 - pseudogene predicted gene 7733
Tssr28844 3 35545880 to 35545883 3 + TSS region transcription start site region 28844
Ube2l3-ps1 3 35545894 to 35546329 435 + pseudogene ubiquitin-conjugating enzyme E2L 3, pseudogene 1
Gm6639 3 35597152 to 35666163 69011 - lincRNA gene predicted gene 6639
Tssr32991 3 35662288 to 35662299 11 - TSS region transcription start site region 32991
Tssr32992 3 35662320 to 35662325 5 - TSS region transcription start site region 32992
Tssr32993 3 35666159 to 35666173 14 - TSS region transcription start site region 32993
Tssr32994 3 35666193 to 35666201 8 - TSS region transcription start site region 32994
Tssr32995 3 35719649 to 35719659 10 - TSS region transcription start site region 32995
Tssr28845 3 35721257 to 35721266 9 + TSS region transcription start site region 28845
Tssr28846 3 35722085 to 35722096 11 + TSS region transcription start site region 28846
Tssr32996 3 35722934 to 35722945 11 - TSS region transcription start site region 32996
Tssr28847 3 35723055 to 35723078 23 + TSS region transcription start site region 28847
Gm25696 3 35735373 to 35735477 104 + snRNA gene predicted gene, 25696
Cpgi13076 3 35753796 to 35754903 1107 CpG island CpG island 13076
Tssr28848 3 35754089 to 35754114 25 + TSS region transcription start site region 28848
Atp11b 3 35754106 to 35856276 102170 + protein coding gene ATPase, class VI, type 11B
Tssr28849 3 35754121 to 35754135 14 + TSS region transcription start site region 28849
Tssr28850 3 35754155 to 35754166 11 + TSS region transcription start site region 28850
Tssr32997 3 35754410 to 35754421 11 - TSS region transcription start site region 32997
Tssr32998 3 35754430 to 35754457 27 - TSS region transcription start site region 32998
Tssr32999 3 35754474 to 35754483 9 - TSS region transcription start site region 32999
Tssr33000 3 35754509 to 35754516 7 - TSS region transcription start site region 33000
Tssr33001 3 35754639 to 35754641 2 - TSS region transcription start site region 33001
Tssr33002 3 35754733 to 35754749 16 - TSS region transcription start site region 33002
Tssr28851 3 35762273 to 35762323 50 + TSS region transcription start site region 28851
Tssr28852 3 35783022 to 35783060 38 + TSS region transcription start site region 28852
Tssr28853 3 35822581 to 35822585 4 + TSS region transcription start site region 28853
Gm43203 3 35845342 to 35845899 557 + unclassified gene predicted gene 43203
D3Mit239 3 35847656 to 35847856 200 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 239
Tssr28854 3 35855835 to 35855844 9 + TSS region transcription start site region 28854
1110021P09Rik 3 35861622 to 35862120 498 unclassified gene RIKEN cDNA 1110021P09 gene
Tssr28855 3 35863802 to 35863805 3 + TSS region transcription start site region 28855
Gm7741 3 35863877 to 35864865 988 + pseudogene predicted gene 7741
Gm20595 3 35875646 to 35883349 7703 - pseudogene predicted gene, 20595
Dcun1d1 3 35892105 to 35937440 45335 - protein coding gene DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
Tssr33003 3 35925614 to 35925617 3 - TSS region transcription start site region 33003
Cpgi13077 3 35931990 to 35933732 1742 CpG island CpG island 13077
Tssr33004 3 35932512 to 35932532 20 - TSS region transcription start site region 33004
Tssr33005 3 35932570 to 35932596 26 - TSS region transcription start site region 33005
Tssr33006 3 35932836 to 35932854 18 - TSS region transcription start site region 33006
Tssr33007 3 35932858 to 35932904 46 - TSS region transcription start site region 33007
Tssr28856 3 35932883 to 35932915 32 + TSS region transcription start site region 28856
Gm15952 3 35933049 to 35955642 22593 + antisense lncRNA gene predicted gene 15952
Tssr33008 3 35933051 to 35933077 26 - TSS region transcription start site region 33008
Tssr33009 3 35933095 to 35933100 5 - TSS region transcription start site region 33009
Tssr33010 3 35933271 to 35933287 16 - TSS region transcription start site region 33010
Tssr860 3 35937386 to 35937390 4 - TSS region transcription start site region 860
Tssr33011 3 35937403 to 35937451 48 - TSS region transcription start site region 33011
Tssr861 3 35937474 to 35937479 5 - TSS region transcription start site region 861
Tssr28857 3 35937542 to 35937553 11 + TSS region transcription start site region 28857
8430422M14Rik 3 35955436 to 35956257 821 - unclassified gene RIKEN cDNA 8430422M14 gene
Mccc1 3 35959312 to 36000678 41366 - protein coding gene methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
Gm43080 3 35969384 to 35972026 2642 - unclassified gene predicted gene 43080
B230207O21Rik 3 35973771 to 35974091 320 + pseudogene RIKEN cDNA B230207O21 gene
Mccc1os 3 35999913 to 36008828 8915 + antisense lncRNA gene methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand
Cpgi13078 3 36000237 to 36000759 522 CpG island CpG island 13078
Tssr28858 3 36000417 to 36000440 23 + TSS region transcription start site region 28858
Tssr33012 3 36000564 to 36000608 44 - TSS region transcription start site region 33012
Tssr33013 3 36000617 to 36000647 30 - TSS region transcription start site region 33013
Tssr33014 3 36000650 to 36000660 10 - TSS region transcription start site region 33014
Tssr33015 3 36000662 to 36000682 20 - TSS region transcription start site region 33015
Ccdc144b 3 36007247 to 36053547 46300 - protein coding gene coiled-coil domain containing 144B
Tssr33016 3 36053491 to 36053501 10 - TSS region transcription start site region 33016
Tssr33017 3 36053504 to 36053510 6 - TSS region transcription start site region 33017
Tssr33018 3 36053512 to 36053531 19 - TSS region transcription start site region 33018
Cpgi13079 3 36065868 to 36066519 651 CpG island CpG island 13079
Tssr28859 3 36065984 to 36066004 20 + TSS region transcription start site region 28859
Acad9 3 36065984 to 36092857 26873 + protein coding gene acyl-Coenzyme A dehydrogenase family, member 9
Tssr28860 3 36066046 to 36066063 17 + TSS region transcription start site region 28860
Tssr28861 3 36066064 to 36066102 38 + TSS region transcription start site region 28861
Tssr28862 3 36066111 to 36066118 7 + TSS region transcription start site region 28862
Tssr28863 3 36075912 to 36075915 3 + TSS region transcription start site region 28863
Gm43079 3 36088859 to 36091446 2587 + antisense lncRNA gene predicted gene 43079
Gm43205 3 36097177 to 36099144 1967 + unclassified gene predicted gene 43205
Cpgi13080 3 36150935 to 36151746 811 CpG island CpG island 13080
Tssr28864 3 36151063 to 36151112 49 + TSS region transcription start site region 28864
Zfp267 3 36151080 to 36170341 19261 + protein coding gene zinc finger protein 267
Tssr28865 3 36151113 to 36151124 11 + TSS region transcription start site region 28865
Qrfpr 3 36179426 to 36222275 42849 - protein coding gene pyroglutamylated RFamide peptide receptor
Gm43255 3 36203289 to 36205623 2334 + antisense lncRNA gene predicted gene 43255
Tssr28866 3 36208122 to 36208167 45 + TSS region transcription start site region 28866
Gm18893 3 36213812 to 36214749 937 - pseudogene predicted gene, 18893
Cpgi13081 3 36221830 to 36222364 534 CpG island CpG island 13081
Tssr33019 3 36222278 to 36222294 16 - TSS region transcription start site region 33019
Tssr33020 3 36222302 to 36222318 16 - TSS region transcription start site region 33020
Cpgi13082 3 36222883 to 36223040 157 CpG island CpG island 13082
Gm42208 3 36272327 to 36274660 2333 - lincRNA gene predicted gene, 42208
Gm42209 3 36354218 to 36406508 52290 - lncRNA gene predicted gene, 42209
Gm17835 3 36394699 to 36395197 498 - pseudogene predicted gene, 17835
Tssr33021 3 36406377 to 36406388 11 - TSS region transcription start site region 33021
Gm17887 3 36421594 to 36422124 530 + pseudogene predicted gene, 17887
Anxa5 3 36448923 to 36475887 26964 - protein coding gene annexin A5
Tssr33022 3 36449346 to 36449363 17 - TSS region transcription start site region 33022
Tssr33023 3 36450661 to 36450705 44 - TSS region transcription start site region 33023
Tssr33024 3 36453497 to 36453537 40 - TSS region transcription start site region 33024
Tssr28867 3 36453511 to 36453542 31 + TSS region transcription start site region 28867
Tssr33025 3 36453539 to 36453593 54 - TSS region transcription start site region 33025
Tssr28868 3 36453882 to 36453941 59 + TSS region transcription start site region 28868
Tssr33026 3 36461971 to 36462001 30 - TSS region transcription start site region 33026
Tssr28869 3 36467762 to 36467773 11 + TSS region transcription start site region 28869
Tssr33027 3 36468920 to 36468948 28 - TSS region transcription start site region 33027
Tssr33028 3 36468952 to 36468965 13 - TSS region transcription start site region 33028
Tssr28870 3 36469240 to 36469248 8 + TSS region transcription start site region 28870
Tssr33029 3 36474526 to 36474530 4 - TSS region transcription start site region 33029
Cpgi13083 3 36475217 to 36476147 930 CpG island CpG island 13083
Mir7009 3 36475461 to 36475524 63 - miRNA gene microRNA 7009
Tssr33030 3 36475604 to 36475675 71 - TSS region transcription start site region 33030
Tssr33031 3 36475688 to 36475705 17 - TSS region transcription start site region 33031
Tssr28871 3 36475932 to 36475959 27 + TSS region transcription start site region 28871
1810062G17Rik 3 36475937 to 36482299 6362 + protein coding gene RIKEN cDNA 1810062G17 gene
Tssr28872 3 36475986 to 36476021 35 + TSS region transcription start site region 28872
Jobes1b 3 36480000 to 36850000 370000 QTL juvenile obesity 1b
Gm11548 3 36499804 to 36506809 7005 - lincRNA gene predicted gene 11548
Gm11549 3 36515057 to 36521445 6388 - lincRNA gene predicted gene 11549
Cpgi13084 3 36521107 to 36521922 815 CpG island CpG island 13084
Tssr33032 3 36521391 to 36521416 25 - TSS region transcription start site region 33032
Tssr33033 3 36521809 to 36521820 11 - TSS region transcription start site region 33033
Gm43537 3 36529222 to 36532331 3109 - unclassified gene predicted gene 43537
Cpgi13085 3 36532180 to 36532348 168 CpG island CpG island 13085