Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:151743454-152237332

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ifi44 3 151730922 to 151749959 19037 - protein coding gene interferon-induced protein 44
Tssr36141 3 151745539 to 151745574 35 - TSS region transcription start site region 36141
Tssr36142 3 151745953 to 151745974 21 - TSS region transcription start site region 36142
Tssr36143 3 151748532 to 151748572 40 - TSS region transcription start site region 36143
Tssr36144 3 151749368 to 151749388 20 - TSS region transcription start site region 36144
Tssr36145 3 151749556 to 151749617 61 - TSS region transcription start site region 36145
Tssr36146 3 151749877 to 151749919 42 - TSS region transcription start site region 36146
Ifi44l 3 151758737 to 151762891 4154 - protein coding gene interferon-induced protein 44 like
Tssr36147 3 151762458 to 151762470 12 - TSS region transcription start site region 36147
Tssr36148 3 151762495 to 151762521 26 - TSS region transcription start site region 36148
Tssr36149 3 151764122 to 151764162 40 - TSS region transcription start site region 36149
Tssr36150 3 151764163 to 151764180 17 - TSS region transcription start site region 36150
Tssr36151 3 151764184 to 151764202 18 - TSS region transcription start site region 36151
Tssr36152 3 151764210 to 151764225 15 - TSS region transcription start site region 36152
Tssr36153 3 151764248 to 151764260 12 - TSS region transcription start site region 36153
Ptgfr 3 151798610 to 151837528 38918 - protein coding gene prostaglandin F receptor
Tssr36154 3 151835930 to 151835944 14 - TSS region transcription start site region 36154
Tssr36155 3 151835967 to 151835979 12 - TSS region transcription start site region 36155
Gm43618 3 151836505 to 151839955 3450 + unclassified gene predicted gene 43618
Cpgi13936 3 151837226 to 151837648 422 CpG island CpG island 13936
Tssr36156 3 151837428 to 151837441 13 - TSS region transcription start site region 36156
Tssr36157 3 151837451 to 151837528 77 - TSS region transcription start site region 36157
Gm31596 3 151846223 to 151912117 65894 - lncRNA gene predicted gene, 31596
Gm43617 3 151887303 to 151895101 7798 + lincRNA gene predicted gene 43617
Gm25056 3 151926348 to 151926409 61 - snRNA gene predicted gene, 25056
Gm2939 3 151959185 to 151959662 477 + pseudogene predicted gene 2939
Gm2860 3 151972802 to 151973508 706 - pseudogene predicted gene 2860
Tssr32393 3 151988440 to 151988447 7 + TSS region transcription start site region 32393
Gm43619 3 151988454 to 151992332 3878 + lincRNA gene predicted gene 43619
Tssr36158 3 152005498 to 152005508 10 - TSS region transcription start site region 36158
Gm9682 3 152071246 to 152071801 555 - pseudogene predicted pseudogene 9682
Cpgi13937 3 152083104 to 152083491 387 CpG island CpG island 13937
Cpgi13938 3 152092503 to 152092834 331 CpG island CpG island 13938
Gipc2 3 152093839 to 152165900 72061 - protein coding gene GIPC PDZ domain containing family, member 2
Gm40179 3 152104061 to 152106918 2857 - lncRNA gene predicted gene, 40179
Cpgi13939 3 152105428 to 152105717 289 CpG island CpG island 13939
Gm31881 3 152106439 to 152107383 944 + antisense lncRNA gene predicted gene, 31881
Cpgi13940 3 152106530 to 152107307 777 CpG island CpG island 13940
Tssr36159 3 152107197 to 152107201 4 - TSS region transcription start site region 36159
Tssr36160 3 152108736 to 152108772 36 - TSS region transcription start site region 36160
Cpgi13941 3 152110957 to 152111174 217 CpG island CpG island 13941
Tssr1097 3 152114909 to 152114932 23 - TSS region transcription start site region 1097
Tssr1098 3 152120096 to 152120114 18 - TSS region transcription start site region 1098
Tssr32394 3 152120310 to 152120320 10 + TSS region transcription start site region 32394
Tssr32395 3 152122974 to 152122981 7 + TSS region transcription start site region 32395
Tssr1099 3 152147377 to 152147386 9 + TSS region transcription start site region 1099
Gm16198 3 152153447 to 152154116 669 + pseudogene predicted gene 16198
Cpgi13942 3 152165347 to 152166255 908 CpG island CpG island 13942
D630002J18Rik 3 152165374 to 152166488 1114 + protein coding gene RIKEN cDNA D630002J18 gene
Tssr36161 3 152165879 to 152165966 87 - TSS region transcription start site region 36161
Cpgi13943 3 152167180 to 152167442 262 CpG island CpG island 13943
Tssr36162 3 152176352 to 152176380 28 - TSS region transcription start site region 36162
Dnajb4 3 152183871 to 152210328 26457 - protein coding gene DnaJ heat shock protein family (Hsp40) member B4
Cpgi13944 3 152193701 to 152193972 271 CpG island CpG island 13944
Tssr36163 3 152193723 to 152193734 11 - TSS region transcription start site region 36163
Tssr36164 3 152193747 to 152193768 21 - TSS region transcription start site region 36164
Tssr36165 3 152193773 to 152193797 24 - TSS region transcription start site region 36165
Tssr36166 3 152193803 to 152193831 28 - TSS region transcription start site region 36166
Tssr36167 3 152193833 to 152193842 9 - TSS region transcription start site region 36167
Gm40180 3 152197571 to 152204579 7008 + lncRNA gene predicted gene, 40180
Cpgi13945 3 152209750 to 152211551 1801 CpG island CpG island 13945
Tssr32396 3 152209899 to 152209928 29 + TSS region transcription start site region 32396
Tssr36168 3 152210017 to 152210028 11 - TSS region transcription start site region 36168
Tssr36169 3 152210032 to 152210123 91 - TSS region transcription start site region 36169
Tssr36170 3 152210267 to 152210320 53 - TSS region transcription start site region 36170
Fubp1 3 152210427 to 152236830 26403 + protein coding gene far upstream element (FUSE) binding protein 1
Tssr32397 3 152210454 to 152210465 11 + TSS region transcription start site region 32397
Tssr32398 3 152210469 to 152210534 65 + TSS region transcription start site region 32398
Tssr32399 3 152214285 to 152214290 5 + TSS region transcription start site region 32399
Tssr32400 3 152215437 to 152215449 12 + TSS region transcription start site region 32400
Tssr32401 3 152226143 to 152226162 19 + TSS region transcription start site region 32401
Tssr32402 3 152231967 to 152231984 17 + TSS region transcription start site region 32402
Tssr32403 3 152234794 to 152234800 6 + TSS region transcription start site region 32403
Nexn 3 152236982 to 152266350 29368 - protein coding gene nexilin