Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:123426166-123790853

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr31549 3 123429801 to 123429813 12 + TSS region transcription start site region 31549
Emrq3 3 123433893 to 123971849 537956 QTL emotional reactivity QTL 3
D3Mit216 3 123433893 to 123434014 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 216
Gm40143 3 123434215 to 123437856 3641 + lncRNA gene predicted gene, 40143
Cpgi13778 3 123442821 to 123443237 416 CpG island CpG island 13778
Gm35065 3 123444328 to 123447447 3119 - antisense lncRNA gene predicted gene, 35065
Cpgi13779 3 123446620 to 123447805 1185 CpG island CpG island 13779
Prss12 3 123446913 to 123506597 59684 + protein coding gene protease, serine 12 neurotrypsin (motopsin)
Tssr31550 3 123447118 to 123447155 37 + TSS region transcription start site region 31550
Gm43590 3 123471970 to 123472356 386 + unclassified gene predicted gene 43590
Snhg8 3 123507552 to 123508336 784 - lncRNA gene small nucleolar RNA host gene 8
Snora24 3 123507937 to 123508066 129 - snoRNA gene small nucleolar RNA, H/ACA box 24
Cpgi13780 3 123507938 to 123508958 1020 CpG island CpG island 13780
Tssr35502 3 123508330 to 123508341 11 - TSS region transcription start site region 35502
Tssr31551 3 123508550 to 123508568 18 + TSS region transcription start site region 31551
Tssr31552 3 123508588 to 123508615 27 + TSS region transcription start site region 31552
Tssr35503 3 123508915 to 123508929 14 - TSS region transcription start site region 35503
Gm9369 3 123509942 to 123510674 732 - pseudogene predicted pseudogene 9369
Ndst3 3 123526166 to 123690853 164687 - protein coding gene N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
D3Mit318 3 123631647 to 123631794 147 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 318
Tssr35504 3 123672380 to 123672400 20 - TSS region transcription start site region 35504
Gm42510 3 123685715 to 123687972 2257 - unclassified gene predicted gene 42510
Tssr35505 3 123688685 to 123688686 1 - TSS region transcription start site region 35505
Tssr35506 3 123690123 to 123690176 53 - TSS region transcription start site region 35506
Cpgi13781 3 123690620 to 123691299 679 CpG island CpG island 13781
Tssr35507 3 123690741 to 123690800 59 - TSS region transcription start site region 35507
Tssr35508 3 123690806 to 123690847 41 - TSS region transcription start site region 35508
Tssr35509 3 123690850 to 123690883 33 - TSS region transcription start site region 35509
Tssr31553 3 123691014 to 123691031 17 + TSS region transcription start site region 31553
Gm24456 3 123743297 to 123743403 106 - snRNA gene predicted gene, 24456
Tssr31554 3 123761249 to 123761299 50 + TSS region transcription start site region 31554
Gm15400 3 123761327 to 123761927 600 + pseudogene predicted gene 15400