Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:119555502-121635528

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128 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm23432 3 119638744 to 119638874 130 - snoRNA gene predicted gene, 23432
Gm4332 3 119709516 to 119709861 345 + pseudogene predicted gene 4332
Tssr35384 3 119709610 to 119709613 3 - TSS region transcription start site region 35384
Ptbp2 3 119718741 to 119783799 65058 - protein coding gene polypyrimidine tract binding protein 2
Tssr35385 3 119720091 to 119720093 2 - TSS region transcription start site region 35385
Gm43300 3 119727748 to 119729790 2042 - unclassified gene predicted gene 43300
Tssr35386 3 119737719 to 119737723 4 - TSS region transcription start site region 35386
Tssr35387 3 119742695 to 119742712 17 - TSS region transcription start site region 35387
Gm42664 3 119743208 to 119746446 3238 - sense intronic lncRNA gene predicted gene 42664
Tssr35388 3 119745808 to 119745812 4 - TSS region transcription start site region 35388
Tssr35389 3 119749982 to 119749986 4 - TSS region transcription start site region 35389
Gm42804 3 119757338 to 119757515 177 + pseudogene predicted gene 42804
Cpgi13753 3 119782202 to 119783787 1585 CpG island CpG island 13753
Tssr31426 3 119782859 to 119782880 21 + TSS region transcription start site region 31426
Tssr35390 3 119783230 to 119783241 11 - TSS region transcription start site region 35390
Tssr35391 3 119783250 to 119783261 11 - TSS region transcription start site region 35391
Tssr35392 3 119783262 to 119783312 50 - TSS region transcription start site region 35392
Tssr35393 3 119783505 to 119783516 11 - TSS region transcription start site region 35393
Gm38548 3 119783820 to 119784949 1129 + lncRNA gene predicted gene, 38548
Gm24744 3 119831937 to 119832057 120 + miRNA gene predicted gene, 24744
Gm26137 3 119837904 to 119838024 120 + miRNA gene predicted gene, 26137
D3Mit144 3 119844605 to 119844742 137 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 144
Tssr31427 3 119903349 to 119903362 13 + TSS region transcription start site region 31427
Gm18384 3 119968731 to 119969538 807 + pseudogene predicted gene, 18384
Tssr31428 3 119987532 to 119987533 1 + TSS region transcription start site region 31428
Gm23733 3 120317884 to 120317989 105 - snRNA gene predicted gene, 23733
Tssr31429 3 120356591 to 120356593 2 + TSS region transcription start site region 31429
Tssr31430 3 120595502 to 120595528 26 + TSS region transcription start site region 31430
Tssr31431 3 120595621 to 120595636 15 + TSS region transcription start site region 31431
6530403H02Rik 3 120604109 to 120886733 282624 - lincRNA gene RIKEN cDNA 6530403H02 gene
Gm25013 3 120609966 to 120610093 127 - snoRNA gene predicted gene, 25013
D3Mit316 3 120689010 to 120689134 124 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 316
Mors2 3 120689010 to 120689134 124 QTL modifier of obesity related sterility 2
Gm42927 3 120735721 to 120739561 3840 - pseudogene predicted gene 42927
Tssr35394 3 120886728 to 120886746 18 - TSS region transcription start site region 35394
Gm40133 3 120932130 to 120934711 2581 - lncRNA gene predicted gene, 40133
Gm43444 3 121020486 to 121020776 290 - unclassified gene predicted gene 43444
Tssr31432 3 121021472 to 121021479 7 + TSS region transcription start site region 31432
Gm42926 3 121029086 to 121029782 696 - unclassified gene predicted gene 42926
Tssr31433 3 121070984 to 121070985 1 + TSS region transcription start site region 31433
Rwdd3 3 121155398 to 121171695 16297 - protein coding gene RWD domain containing 3
Tssr35395 3 121159223 to 121159232 9 - TSS region transcription start site region 35395
Gm10652 3 121168656 to 121171277 2621 + unclassified gene predicted gene 10652
Cpgi13754 3 121171283 to 121171878 595 CpG island CpG island 13754
Tssr35396 3 121171678 to 121171717 39 - TSS region transcription start site region 35396
Gm5710 3 121180103 to 121181097 994 - pseudogene predicted gene 5710
Tmem56 3 121202008 to 121283108 81100 - protein coding gene transmembrane protein 56
Tssr35397 3 121205479 to 121205484 5 - TSS region transcription start site region 35397
Tssr35398 3 121206332 to 121206364 32 - TSS region transcription start site region 35398
Tssr35399 3 121232423 to 121232435 12 - TSS region transcription start site region 35399
Tssr35400 3 121249965 to 121249966 1 - TSS region transcription start site region 35400
Gm9353 3 121250134 to 121250737 603 - pseudogene predicted gene 9353
Cpgi13755 3 121262093 to 121263506 1413 CpG island CpG island 13755
Tssr35401 3 121262871 to 121262922 51 - TSS region transcription start site region 35401
Tssr1032 3 121262927 to 121262942 15 - TSS region transcription start site region 1032
Tssr35402 3 121262951 to 121262969 18 - TSS region transcription start site region 35402
Tssr35403 3 121263158 to 121263174 16 - TSS region transcription start site region 35403
Tssr35404 3 121263243 to 121263252 9 - TSS region transcription start site region 35404
Tssr35405 3 121263297 to 121263310 13 - TSS region transcription start site region 35405
Tssr35406 3 121263314 to 121263347 33 - TSS region transcription start site region 35406
Tssr35407 3 121277128 to 121277142 14 - TSS region transcription start site region 35407
Tssr35408 3 121277185 to 121277198 13 - TSS region transcription start site region 35408
Gm30517 3 121277524 to 121278295 771 + pseudogene predicted gene, 30517
Tssr35409 3 121283017 to 121283030 13 - TSS region transcription start site region 35409
Tssr35410 3 121283051 to 121283058 7 - TSS region transcription start site region 35410
Tssr35411 3 121283096 to 121283103 7 - TSS region transcription start site region 35411
Cpgi13756 3 121291482 to 121292289 807 CpG island CpG island 13756
Tssr35412 3 121291598 to 121291614 16 - TSS region transcription start site region 35412
Tssr31434 3 121291725 to 121291817 92 + TSS region transcription start site region 31434
Alg14 3 121291773 to 121363094 71321 + protein coding gene asparagine-linked glycosylation 14
Tssr31435 3 121291821 to 121291832 11 + TSS region transcription start site region 31435
Tssr31436 3 121291851 to 121291862 11 + TSS region transcription start site region 31436
Tssr31437 3 121299330 to 121299334 4 + TSS region transcription start site region 31437
Gm26027 3 121337692 to 121337959 267 + unclassified non-coding RNA gene predicted gene, 26027
Tssr35413 3 121343327 to 121343337 10 - TSS region transcription start site region 35413
Tssr35414 3 121343356 to 121343371 15 - TSS region transcription start site region 35414
Gm33310 3 121353585 to 121361268 7683 + lncRNA gene predicted gene, 33310
Gm33363 3 121369047 to 121388729 19682 + lncRNA gene predicted gene, 33363
Tssr31438 3 121369582 to 121369598 16 + TSS region transcription start site region 31438
Tssr31439 3 121369647 to 121369659 12 + TSS region transcription start site region 31439
Cpgi13757 3 121370461 to 121370618 157 CpG island CpG island 13757
Gm5711 3 121380259 to 121380679 420 - pseudogene predicted gene 5711
Tssr31440 3 121387794 to 121387800 6 + TSS region transcription start site region 31440
Gm40134 3 121389264 to 121392740 3476 + lncRNA gene predicted gene, 40134
Gm42928 3 121424236 to 121427574 3338 - unclassified gene predicted gene 42928
Cpgi13758 3 121425956 to 121427785 1829 CpG island CpG island 13758
Tssr31441 3 121426495 to 121426541 46 + TSS region transcription start site region 31441
Cnn3 3 121426541 to 121458205 31664 + protein coding gene calponin 3, acidic
Tssr31442 3 121426568 to 121426575 7 + TSS region transcription start site region 31442
Tssr35415 3 121427472 to 121427490 18 - TSS region transcription start site region 35415
Gm42929 3 121428046 to 121429331 1285 + unclassified gene predicted gene 42929
Tssr31443 3 121449680 to 121449694 14 + TSS region transcription start site region 31443
Tssr31444 3 121449708 to 121449735 27 + TSS region transcription start site region 31444
Tssr31445 3 121449747 to 121449764 17 + TSS region transcription start site region 31445
Tssr1033 3 121456664 to 121456670 6 + TSS region transcription start site region 1033
Tssr31446 3 121457332 to 121457352 20 + TSS region transcription start site region 31446
Slc44a3 3 121459528 to 121532344 72816 - protein coding gene solute carrier family 44, member 3
D3Mit42 3 121461791 to 121461943 152 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 42
D3Mit43 3 121461791 to 121461913 122 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 43
Tssr35416 3 121478778 to 121478789 11 - TSS region transcription start site region 35416
Tssr31447 3 121484736 to 121484744 8 + TSS region transcription start site region 31447
Gm38684 3 121530969 to 121532464 1495 + lncRNA gene predicted gene, 38684
Tssr31448 3 121531591 to 121531600 9 + TSS region transcription start site region 31448
Tssr31449 3 121531603 to 121531634 31 + TSS region transcription start site region 31449
Tssr31450 3 121531653 to 121531678 25 + TSS region transcription start site region 31450
Cpgi13759 3 121532053 to 121532477 424 CpG island CpG island 13759
Tssr35417 3 121532204 to 121532215 11 - TSS region transcription start site region 35417
Tssr35418 3 121532240 to 121532269 29 - TSS region transcription start site region 35418
Tssr35419 3 121532271 to 121532341 70 - TSS region transcription start site region 35419
Tssr31451 3 121532655 to 121532667 12 + TSS region transcription start site region 31451
A530020G20Rik 3 121532944 to 121536207 3263 + antisense lncRNA gene RIKEN cDNA A530020G20 gene
Gm40135 3 121545224 to 121562686 17462 + lncRNA gene predicted gene, 40135
Tssr1034 3 121547850 to 121547855 5 - TSS region transcription start site region 1034
Tssr35420 3 121548030 to 121548035 5 - TSS region transcription start site region 35420
Tssr35421 3 121548097 to 121548106 9 - TSS region transcription start site region 35421
Tssr35422 3 121548142 to 121548144 2 - TSS region transcription start site region 35422
Tssr35423 3 121548153 to 121548164 11 - TSS region transcription start site region 35423
Gm33547 3 121564153 to 121576164 12011 - lncRNA gene predicted gene, 33547
Tssr1035 3 121570993 to 121571007 14 + TSS region transcription start site region 1035
Tssr35424 3 121571605 to 121571615 10 - TSS region transcription start site region 35424
Tssr31452 3 121571816 to 121571839 23 + TSS region transcription start site region 31452
Tssr1036 3 121577493 to 121577507 14 + TSS region transcription start site region 1036
Gm33485 3 121580510 to 121606639 26129 - lncRNA gene predicted gene, 33485
Tssr1037 3 121589378 to 121589390 12 - TSS region transcription start site region 1037
Gm33708 3 121592922 to 121595092 2170 + lncRNA gene predicted gene, 33708
D3Mit251 3 121596511 to 121596642 131 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 251
Tssr35425 3 121616078 to 121616086 8 - TSS region transcription start site region 35425
A730020M07Rik 3 121634936 to 121643485 8549 - lincRNA gene RIKEN cDNA A730020M07 gene