Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:106587587-107188442

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm4549 3 106589259 to 106590861 1602 protein coding gene predicted gene 4549
Gm38271 3 106589260 to 106590862 1602 + unclassified gene predicted gene, 38271
Cpgi13667 3 106684850 to 106685250 400 CpG island CpG island 13667
Tssr34985 3 106684891 to 106684902 11 - TSS region transcription start site region 34985
Tssr31131 3 106684943 to 106685021 78 + TSS region transcription start site region 31131
Lrif1 3 106684987 to 106736577 51590 + protein coding gene ligand dependent nuclear receptor interacting factor 1
Cpgi13668 3 106721491 to 106722466 975 CpG island CpG island 13668
Tssr31132 3 106721672 to 106721733 61 + TSS region transcription start site region 31132
Tssr31133 3 106721792 to 106721803 11 + TSS region transcription start site region 31133
Tssr31134 3 106721809 to 106721822 13 + TSS region transcription start site region 31134
Tssr31135 3 106721853 to 106721864 11 + TSS region transcription start site region 31135
Tssr31136 3 106721873 to 106721876 3 + TSS region transcription start site region 31136
Tssr31137 3 106721898 to 106721954 56 + TSS region transcription start site region 31137
Tssr31138 3 106722132 to 106722139 7 + TSS region transcription start site region 31138
Tssr31139 3 106722225 to 106722258 33 + TSS region transcription start site region 31139
Gm38253 3 106725599 to 106730276 4677 + unclassified gene predicted gene, 38253
Cd53 3 106759921 to 106790149 30228 - protein coding gene CD53 antigen
Tssr34986 3 106760469 to 106760485 16 - TSS region transcription start site region 34986
Tssr34987 3 106760516 to 106760530 14 - TSS region transcription start site region 34987
Tssr34988 3 106760596 to 106760602 6 - TSS region transcription start site region 34988
Tssr34989 3 106760801 to 106760812 11 - TSS region transcription start site region 34989
Tssr34990 3 106762117 to 106762181 64 - TSS region transcription start site region 34990
Tssr34991 3 106763238 to 106763287 49 - TSS region transcription start site region 34991
Tssr34992 3 106766425 to 106766465 40 - TSS region transcription start site region 34992
Tssr34993 3 106766478 to 106766501 23 - TSS region transcription start site region 34993
Tssr34994 3 106766671 to 106766692 21 - TSS region transcription start site region 34994
Tssr34995 3 106766726 to 106766743 17 - TSS region transcription start site region 34995
Tssr34996 3 106766781 to 106766811 30 - TSS region transcription start site region 34996
Tssr34997 3 106767362 to 106767417 55 - TSS region transcription start site region 34997
Tssr34998 3 106767955 to 106768005 50 - TSS region transcription start site region 34998
Tssr1001 3 106775877 to 106775900 23 - TSS region transcription start site region 1001
Tssr31140 3 106785404 to 106785426 22 + TSS region transcription start site region 31140
Tssr31141 3 106785478 to 106785489 11 + TSS region transcription start site region 31141
Tssr1002 3 106788012 to 106788027 15 - TSS region transcription start site region 1002
Tssr34999 3 106788078 to 106788118 40 - TSS region transcription start site region 34999
Tssr31142 3 106788261 to 106788268 7 + TSS region transcription start site region 31142
Tssr1003 3 106788532 to 106788548 16 + TSS region transcription start site region 1003
Tssr35000 3 106788568 to 106788579 11 - TSS region transcription start site region 35000
Tssr31143 3 106788759 to 106788771 12 + TSS region transcription start site region 31143
Tssr31144 3 106788799 to 106788808 9 + TSS region transcription start site region 31144
Tssr31145 3 106788858 to 106788882 24 + TSS region transcription start site region 31145
Tssr35001 3 106790003 to 106790028 25 - TSS region transcription start site region 35001
Tssr35002 3 106790034 to 106790045 11 - TSS region transcription start site region 35002
Tssr35003 3 106790047 to 106790072 25 - TSS region transcription start site region 35003
Tssr35004 3 106790073 to 106790084 11 - TSS region transcription start site region 35004
Tssr35005 3 106790129 to 106790140 11 - TSS region transcription start site region 35005
Tssr35006 3 106790143 to 106790154 11 - TSS region transcription start site region 35006
Tssr31146 3 106790164 to 106790176 12 + TSS region transcription start site region 31146
Tssr35007 3 106790175 to 106790186 11 - TSS region transcription start site region 35007
Olfr266 3 106821607 to 106822557 950 - protein coding gene olfactory receptor 266
Gm35507 3 106827307 to 106879361 52054 - lincRNA gene predicted gene, 35507
Gm18162 3 106887587 to 106888442 855 pseudogene predicted gene, 18162
Gm27008 3 106903241 to 106981614 78373 - antisense lncRNA gene predicted gene, 27008
Tssr31147 3 107001637 to 107001661 24 + TSS region transcription start site region 31147
D3Tem3 3 107033259 to 107033400 141 DNA segment DNA segment, Chr 3, Temple 3
Cpgi13669 3 107035613 to 107037456 1843 CpG island CpG island 13669
Tssr31148 3 107036156 to 107036181 25 + TSS region transcription start site region 31148
Kcna3 3 107036169 to 107038070 1901 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 3
Tssr35008 3 107038043 to 107038062 19 - TSS region transcription start site region 35008
Tssr35009 3 107038306 to 107038335 29 - TSS region transcription start site region 35009
Tssr31149 3 107038927 to 107038944 17 + TSS region transcription start site region 31149
AI504432 3 107039504 to 107054322 14818 + lincRNA gene expressed sequence AI504432
D3Mit143 3 107046406 to 107046531 125 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 143
Gm38712 3 107054947 to 107066682 11735 - lncRNA gene predicted gene, 38712
Tssr35010 3 107066712 to 107066713 1 - TSS region transcription start site region 35010
Tssr31150 3 107090842 to 107090851 9 + TSS region transcription start site region 31150
Tssr31151 3 107090874 to 107090905 31 + TSS region transcription start site region 31151
A930002I21Rik 3 107090880 to 107098401 7521 + lincRNA gene RIKEN cDNA A930002I21 gene
Tssr31152 3 107090913 to 107090930 17 + TSS region transcription start site region 31152
Tssr31153 3 107090948 to 107090963 15 + TSS region transcription start site region 31153
Tssr31154 3 107091408 to 107091423 15 + TSS region transcription start site region 31154
Tssr31155 3 107091430 to 107091442 12 + TSS region transcription start site region 31155
Tssr35011 3 107091784 to 107091820 36 - TSS region transcription start site region 35011
Tssr35012 3 107092912 to 107092919 7 - TSS region transcription start site region 35012
Cpgi13670 3 107100917 to 107102870 1953 CpG island CpG island 13670
Tssr31156 3 107100928 to 107100989 61 + TSS region transcription start site region 31156
Tssr31157 3 107101027 to 107101057 30 + TSS region transcription start site region 31157
Kcna2 3 107101146 to 107115005 13859 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 2
Tssr31158 3 107101267 to 107101281 14 + TSS region transcription start site region 31158
Tssr31159 3 107101551 to 107101562 11 + TSS region transcription start site region 31159
Tssr31160 3 107101578 to 107101585 7 + TSS region transcription start site region 31160
Tssr31161 3 107101596 to 107101649 53 + TSS region transcription start site region 31161
Tssr31162 3 107101660 to 107101669 9 + TSS region transcription start site region 31162
Tssr31163 3 107101700 to 107101712 12 + TSS region transcription start site region 31163
Tssr31164 3 107101766 to 107101803 37 + TSS region transcription start site region 31164
Tssr31165 3 107102580 to 107102601 21 + TSS region transcription start site region 31165
Cpgi13671 3 107160044 to 107160251 207 CpG island CpG island 13671
Tssr1004 3 107173796 to 107173800 4 + TSS region transcription start site region 1004
Tssr31166 3 107183139 to 107183144 5 + TSS region transcription start site region 31166
Kcna10 3 107183143 to 107195721 12578 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 10