Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:105994009-108444056

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535 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pifo 3 105996957 to 106014646 17689 - protein coding gene primary cilia formation
Cpgi13664 3 106001356 to 106001561 205 CpG island CpG island 13664
Tssr34946 3 106001451 to 106001471 20 - TSS region transcription start site region 34946
Tssr34947 3 106001474 to 106001513 39 - TSS region transcription start site region 34947
Gm42722 3 106001561 to 106017539 15978 + antisense lncRNA gene predicted gene 42722
Tssr31101 3 106001578 to 106001621 43 + TSS region transcription start site region 31101
Gm42721 3 106007865 to 106009387 1522 - sense intronic lncRNA gene predicted gene 42721
Tssr34948 3 106014598 to 106014607 9 - TSS region transcription start site region 34948
Tssr34949 3 106014609 to 106014624 15 - TSS region transcription start site region 34949
Tssr34950 3 106014630 to 106014643 13 - TSS region transcription start site region 34950
Chil5 3 106016919 to 106032814 15895 - protein coding gene chitinase-like 5
Tssr34951 3 106032879 to 106032888 9 - TSS region transcription start site region 34951
Tssr34952 3 106032893 to 106032904 11 - TSS region transcription start site region 34952
Tssr34953 3 106032905 to 106032953 48 - TSS region transcription start site region 34953
Tssr31102 3 106034661 to 106034692 31 + TSS region transcription start site region 31102
Gm4540 3 106034664 to 106035065 401 + pseudogene predicted gene 4540
Tssr31103 3 106034778 to 106034818 40 + TSS region transcription start site region 31103
Gm9504 3 106042964 to 106043431 467 - pseudogene predicted gene 9504
Gm4248 3 106091034 to 106091349 315 + pseudogene predicted pseudogene 4248
Tssr31104 3 106113361 to 106113378 17 + TSS region transcription start site region 31104
Chia1 3 106113382 to 106132118 18736 + protein coding gene chitinase, acidic 1
Tssr998 3 106130920 to 106130923 3 + TSS region transcription start site region 998
Tssr31105 3 106131860 to 106131869 9 + TSS region transcription start site region 31105
Tssr31106 3 106131925 to 106131960 35 + TSS region transcription start site region 31106
Tssr31107 3 106131964 to 106132059 95 + TSS region transcription start site region 31107
Chil3 3 106147554 to 106167564 20010 - protein coding gene chitinase-like 3
Tssr31108 3 106147555 to 106147556 1 + TSS region transcription start site region 31108
Tssr34954 3 106149774 to 106149792 18 - TSS region transcription start site region 34954
Tssr34955 3 106163369 to 106163375 6 - TSS region transcription start site region 34955
Tssr34956 3 106166210 to 106166245 35 - TSS region transcription start site region 34956
Gm43709 3 106177832 to 106179175 1343 - pseudogene predicted gene 43709
Chil4 3 106201491 to 106219479 17988 - protein coding gene chitinase-like 4
Tssr34957 3 106219477 to 106219483 6 - TSS region transcription start site region 34957
Gm6522 3 106275744 to 106299027 23283 + pseudogene predicted gene 6522
Tssr999 3 106349646 to 106349648 2 - TSS region transcription start site region 999
Gm43212 3 106373206 to 106374307 1101 + pseudogene predicted gene 43212
Chil6 3 106387384 to 106406182 18798 - protein coding gene chitinase-like 6
Tssr34958 3 106406090 to 106406110 20 - TSS region transcription start site region 34958
Tssr1000 3 106465025 to 106465034 9 + TSS region transcription start site region 1000
Gm10673 3 106478282 to 106480867 2585 protein coding gene predicted gene 10673
Gm38244 3 106478283 to 106480868 2585 + unclassified gene predicted gene, 38244
2010016I18Rik 3 106481986 to 106485913 3927 - lncRNA gene RIKEN cDNA 2010016I18 gene
Cpgi13665 3 106482285 to 106482899 614 CpG island CpG island 13665
Tssr31109 3 106482427 to 106482477 50 + TSS region transcription start site region 31109
Dennd2d 3 106482431 to 106503030 20599 + protein coding gene DENN/MADD domain containing 2D
Tssr31110 3 106482557 to 106482571 14 + TSS region transcription start site region 31110
Tssr31111 3 106482607 to 106482660 53 + TSS region transcription start site region 31111
Tssr34959 3 106483435 to 106483437 2 - TSS region transcription start site region 34959
Tssr34960 3 106485882 to 106485888 6 - TSS region transcription start site region 34960
Tssr34961 3 106485903 to 106485926 23 - TSS region transcription start site region 34961
Tssr34962 3 106485928 to 106485960 32 - TSS region transcription start site region 34962
Tssr31112 3 106486009 to 106486057 48 + TSS region transcription start site region 31112
Tssr31113 3 106486059 to 106486092 33 + TSS region transcription start site region 31113
Tssr34963 3 106486333 to 106486336 3 - TSS region transcription start site region 34963
Cept1 3 106502260 to 106547802 45542 - protein coding gene choline/ethanolaminephosphotransferase 1
9030425P06Rik 3 106506164 to 106510561 4397 unclassified non-coding RNA gene RIKEN cDNA 9030425P06 gene
Tssr34964 3 106511462 to 106511467 5 - TSS region transcription start site region 34964
Tssr34965 3 106513536 to 106513540 4 - TSS region transcription start site region 34965
Tssr34966 3 106514081 to 106514087 6 - TSS region transcription start site region 34966
Tssr34967 3 106516101 to 106516116 15 - TSS region transcription start site region 34967
Tssr34968 3 106516135 to 106516173 38 - TSS region transcription start site region 34968
Tssr34969 3 106516271 to 106516283 12 - TSS region transcription start site region 34969
Tssr34970 3 106517015 to 106517020 5 - TSS region transcription start site region 34970
Tssr34971 3 106521792 to 106521802 10 - TSS region transcription start site region 34971
Tssr34972 3 106525454 to 106525503 49 - TSS region transcription start site region 34972
Tssr34973 3 106528142 to 106528190 48 - TSS region transcription start site region 34973
Tssr34974 3 106528251 to 106528271 20 - TSS region transcription start site region 34974
Tssr34975 3 106529250 to 106529281 31 - TSS region transcription start site region 34975
Tssr34976 3 106539451 to 106539472 21 - TSS region transcription start site region 34976
Tssr34977 3 106542164 to 106542192 28 - TSS region transcription start site region 34977
Tssr34978 3 106542199 to 106542212 13 - TSS region transcription start site region 34978
Tssr34979 3 106543195 to 106543199 4 - TSS region transcription start site region 34979
Tssr31114 3 106545880 to 106545899 19 + TSS region transcription start site region 31114
Tssr34980 3 106546161 to 106546172 11 - TSS region transcription start site region 34980
Cpgi13666 3 106547157 to 106548361 1204 CpG island CpG island 13666
Tssr34981 3 106547564 to 106547578 14 - TSS region transcription start site region 34981
Tssr34982 3 106547582 to 106547593 11 - TSS region transcription start site region 34982
Tssr31115 3 106547697 to 106547714 17 + TSS region transcription start site region 31115
Tssr34983 3 106547702 to 106547723 21 - TSS region transcription start site region 34983
Tssr34984 3 106547726 to 106547781 55 - TSS region transcription start site region 34984
Tssr31116 3 106547727 to 106547738 11 + TSS region transcription start site region 31116
Dram2 3 106547798 to 106575341 27543 + protein coding gene DNA-damage regulated autophagy modulator 2
Tssr31117 3 106547822 to 106547888 66 + TSS region transcription start site region 31117
Gm43070 3 106553478 to 106553892 414 - pseudogene predicted gene 43070
Tssr31118 3 106562167 to 106562176 9 + TSS region transcription start site region 31118
Tssr31119 3 106565911 to 106565916 5 + TSS region transcription start site region 31119
Gm43071 3 106567605 to 106569636 2031 + unclassified gene predicted gene 43071
Tssr31120 3 106567864 to 106567876 12 + TSS region transcription start site region 31120
Tssr31121 3 106568055 to 106568073 18 + TSS region transcription start site region 31121
Tssr31122 3 106569343 to 106569360 17 + TSS region transcription start site region 31122
Tssr31123 3 106569422 to 106569438 16 + TSS region transcription start site region 31123
Tssr31124 3 106569607 to 106569621 14 + TSS region transcription start site region 31124
Tssr31125 3 106573725 to 106573737 12 + TSS region transcription start site region 31125
Tssr31126 3 106573783 to 106573795 12 + TSS region transcription start site region 31126
Tssr31127 3 106573898 to 106573909 11 + TSS region transcription start site region 31127
Tssr31128 3 106573972 to 106573989 17 + TSS region transcription start site region 31128
Tssr31129 3 106574028 to 106574040 12 + TSS region transcription start site region 31129
Tssr31130 3 106574042 to 106574069 27 + TSS region transcription start site region 31130
5530402H23Rik 3 106577679 to 106579289 1610 unclassified gene RIKEN cDNA 5530402H23 gene
Gm4549 3 106589259 to 106590861 1602 protein coding gene predicted gene 4549
Gm38271 3 106589260 to 106590862 1602 + unclassified gene predicted gene, 38271
Cpgi13667 3 106684850 to 106685250 400 CpG island CpG island 13667
Tssr34985 3 106684891 to 106684902 11 - TSS region transcription start site region 34985
Tssr31131 3 106684943 to 106685021 78 + TSS region transcription start site region 31131
Lrif1 3 106684987 to 106736577 51590 + protein coding gene ligand dependent nuclear receptor interacting factor 1
Cpgi13668 3 106721491 to 106722466 975 CpG island CpG island 13668
Tssr31132 3 106721672 to 106721733 61 + TSS region transcription start site region 31132
Tssr31133 3 106721792 to 106721803 11 + TSS region transcription start site region 31133
Tssr31134 3 106721809 to 106721822 13 + TSS region transcription start site region 31134
Tssr31135 3 106721853 to 106721864 11 + TSS region transcription start site region 31135
Tssr31136 3 106721873 to 106721876 3 + TSS region transcription start site region 31136
Tssr31137 3 106721898 to 106721954 56 + TSS region transcription start site region 31137
Tssr31138 3 106722132 to 106722139 7 + TSS region transcription start site region 31138
Tssr31139 3 106722225 to 106722258 33 + TSS region transcription start site region 31139
Gm38253 3 106725599 to 106730276 4677 + unclassified gene predicted gene, 38253
Cd53 3 106759921 to 106790149 30228 - protein coding gene CD53 antigen
Tssr34986 3 106760469 to 106760485 16 - TSS region transcription start site region 34986
Tssr34987 3 106760516 to 106760530 14 - TSS region transcription start site region 34987
Tssr34988 3 106760596 to 106760602 6 - TSS region transcription start site region 34988
Tssr34989 3 106760801 to 106760812 11 - TSS region transcription start site region 34989
Tssr34990 3 106762117 to 106762181 64 - TSS region transcription start site region 34990
Tssr34991 3 106763238 to 106763287 49 - TSS region transcription start site region 34991
Tssr34992 3 106766425 to 106766465 40 - TSS region transcription start site region 34992
Tssr34993 3 106766478 to 106766501 23 - TSS region transcription start site region 34993
Tssr34994 3 106766671 to 106766692 21 - TSS region transcription start site region 34994
Tssr34995 3 106766726 to 106766743 17 - TSS region transcription start site region 34995
Tssr34996 3 106766781 to 106766811 30 - TSS region transcription start site region 34996
Tssr34997 3 106767362 to 106767417 55 - TSS region transcription start site region 34997
Tssr34998 3 106767955 to 106768005 50 - TSS region transcription start site region 34998
Tssr1001 3 106775877 to 106775900 23 - TSS region transcription start site region 1001
Tssr31140 3 106785404 to 106785426 22 + TSS region transcription start site region 31140
Tssr31141 3 106785478 to 106785489 11 + TSS region transcription start site region 31141
Tssr1002 3 106788012 to 106788027 15 - TSS region transcription start site region 1002
Tssr34999 3 106788078 to 106788118 40 - TSS region transcription start site region 34999
Tssr31142 3 106788261 to 106788268 7 + TSS region transcription start site region 31142
Tssr1003 3 106788532 to 106788548 16 + TSS region transcription start site region 1003
Tssr35000 3 106788568 to 106788579 11 - TSS region transcription start site region 35000
Tssr31143 3 106788759 to 106788771 12 + TSS region transcription start site region 31143
Tssr31144 3 106788799 to 106788808 9 + TSS region transcription start site region 31144
Tssr31145 3 106788858 to 106788882 24 + TSS region transcription start site region 31145
Tssr35001 3 106790003 to 106790028 25 - TSS region transcription start site region 35001
Tssr35002 3 106790034 to 106790045 11 - TSS region transcription start site region 35002
Tssr35003 3 106790047 to 106790072 25 - TSS region transcription start site region 35003
Tssr35004 3 106790073 to 106790084 11 - TSS region transcription start site region 35004
Tssr35005 3 106790129 to 106790140 11 - TSS region transcription start site region 35005
Tssr35006 3 106790143 to 106790154 11 - TSS region transcription start site region 35006
Tssr31146 3 106790164 to 106790176 12 + TSS region transcription start site region 31146
Tssr35007 3 106790175 to 106790186 11 - TSS region transcription start site region 35007
Olfr266 3 106821607 to 106822557 950 - protein coding gene olfactory receptor 266
Gm35507 3 106827307 to 106879361 52054 - lincRNA gene predicted gene, 35507
Gm18162 3 106887587 to 106888442 855 pseudogene predicted gene, 18162
Gm27008 3 106903241 to 106981614 78373 - antisense lncRNA gene predicted gene, 27008
Tssr31147 3 107001637 to 107001661 24 + TSS region transcription start site region 31147
D3Tem3 3 107033259 to 107033400 141 DNA segment DNA segment, Chr 3, Temple 3
Cpgi13669 3 107035613 to 107037456 1843 CpG island CpG island 13669
Tssr31148 3 107036156 to 107036181 25 + TSS region transcription start site region 31148
Kcna3 3 107036169 to 107038070 1901 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 3
Tssr35008 3 107038043 to 107038062 19 - TSS region transcription start site region 35008
Tssr35009 3 107038306 to 107038335 29 - TSS region transcription start site region 35009
Tssr31149 3 107038927 to 107038944 17 + TSS region transcription start site region 31149
AI504432 3 107039504 to 107054322 14818 + lincRNA gene expressed sequence AI504432
D3Mit143 3 107046406 to 107046531 125 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 143
Gm38712 3 107054947 to 107066682 11735 - lncRNA gene predicted gene, 38712
Tssr35010 3 107066712 to 107066713 1 - TSS region transcription start site region 35010
Tssr31150 3 107090842 to 107090851 9 + TSS region transcription start site region 31150
Tssr31151 3 107090874 to 107090905 31 + TSS region transcription start site region 31151
A930002I21Rik 3 107090880 to 107098401 7521 + lincRNA gene RIKEN cDNA A930002I21 gene
Tssr31152 3 107090913 to 107090930 17 + TSS region transcription start site region 31152
Tssr31153 3 107090948 to 107090963 15 + TSS region transcription start site region 31153
Tssr31154 3 107091408 to 107091423 15 + TSS region transcription start site region 31154
Tssr31155 3 107091430 to 107091442 12 + TSS region transcription start site region 31155
Tssr35011 3 107091784 to 107091820 36 - TSS region transcription start site region 35011
Tssr35012 3 107092912 to 107092919 7 - TSS region transcription start site region 35012
Cpgi13670 3 107100917 to 107102870 1953 CpG island CpG island 13670
Tssr31156 3 107100928 to 107100989 61 + TSS region transcription start site region 31156
Tssr31157 3 107101027 to 107101057 30 + TSS region transcription start site region 31157
Kcna2 3 107101146 to 107115005 13859 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 2
Tssr31158 3 107101267 to 107101281 14 + TSS region transcription start site region 31158
Tssr31159 3 107101551 to 107101562 11 + TSS region transcription start site region 31159
Tssr31160 3 107101578 to 107101585 7 + TSS region transcription start site region 31160
Tssr31161 3 107101596 to 107101649 53 + TSS region transcription start site region 31161
Tssr31162 3 107101660 to 107101669 9 + TSS region transcription start site region 31162
Tssr31163 3 107101700 to 107101712 12 + TSS region transcription start site region 31163
Tssr31164 3 107101766 to 107101803 37 + TSS region transcription start site region 31164
Tssr31165 3 107102580 to 107102601 21 + TSS region transcription start site region 31165
Cpgi13671 3 107160044 to 107160251 207 CpG island CpG island 13671
Tssr1004 3 107173796 to 107173800 4 + TSS region transcription start site region 1004
Tssr31166 3 107183139 to 107183144 5 + TSS region transcription start site region 31166
Kcna10 3 107183143 to 107195721 12578 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 10
Tssr31167 3 107211292 to 107211302 10 + TSS region transcription start site region 31167
Cym 3 107211295 to 107221732 10437 - protein coding gene chymosin
Tssr35013 3 107211317 to 107211326 9 - TSS region transcription start site region 35013
Tssr31168 3 107211338 to 107211374 36 + TSS region transcription start site region 31168
Tssr35014 3 107211343 to 107211384 41 - TSS region transcription start site region 35014
Tssr31169 3 107211384 to 107211407 23 + TSS region transcription start site region 31169
Tssr35015 3 107211401 to 107211404 3 - TSS region transcription start site region 35015
Tssr31170 3 107211421 to 107211434 13 + TSS region transcription start site region 31170
Tssr1005 3 107211424 to 107211431 7 - TSS region transcription start site region 1005
Tssr31171 3 107211437 to 107211440 3 + TSS region transcription start site region 31171
Tssr31172 3 107211448 to 107211456 8 + TSS region transcription start site region 31172