Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:103861562-106991569

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419 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptpn22 3 103859795 to 103912247 52452 + protein coding gene protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
Tssr34868 3 103862634 to 103862646 12 - TSS region transcription start site region 34868
Gm15472 3 103863166 to 103864423 1257 + sense intronic lncRNA gene predicted gene 15472
Tssr31026 3 103863197 to 103863200 3 + TSS region transcription start site region 31026
Tssr31027 3 103864073 to 103864076 3 + TSS region transcription start site region 31027
Gm43065 3 103864706 to 103866797 2091 + sense intronic lncRNA gene predicted gene 43065
Tssr34869 3 103868090 to 103868099 9 - TSS region transcription start site region 34869
Tssr34870 3 103868145 to 103868167 22 - TSS region transcription start site region 34870
Tssr31028 3 103885939 to 103885976 37 + TSS region transcription start site region 31028
Tssr31029 3 103886237 to 103886248 11 + TSS region transcription start site region 31029
Tssr31030 3 103887260 to 103887263 3 + TSS region transcription start site region 31030
D3Mit266 3 103887450 to 103887635 185 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 266
Tssr31031 3 103901810 to 103901821 11 + TSS region transcription start site region 31031
Gm15602 3 103902499 to 103902963 464 - pseudogene predicted gene 15602
Tssr31032 3 103908035 to 103908083 48 + TSS region transcription start site region 31032
Cpgi13641 3 103913856 to 103915412 1556 CpG island CpG island 13641
Tssr31033 3 103914099 to 103914118 19 + TSS region transcription start site region 31033
Rsbn1 3 103914120 to 103966636 52516 + protein coding gene rosbin, round spermatid basic protein 1
Tssr34871 3 103914178 to 103914186 8 - TSS region transcription start site region 34871
Tssr993 3 103914242 to 103914244 2 + TSS region transcription start site region 993
Tssr31034 3 103914371 to 103914405 34 + TSS region transcription start site region 31034
Tssr31035 3 103914412 to 103914430 18 + TSS region transcription start site region 31035
Tssr31036 3 103914560 to 103914605 45 + TSS region transcription start site region 31036
Tssr31037 3 103914613 to 103914624 11 + TSS region transcription start site region 31037
Tssr31038 3 103919626 to 103919630 4 + TSS region transcription start site region 31038
Phtf1os 3 103964536 to 103968316 3780 - antisense lncRNA gene putative homeodomain transcription factor 1, opposite strand
Cpgi13642 3 103967921 to 103968959 1038 CpG island CpG island 13642
Tssr31039 3 103967945 to 103967972 27 + TSS region transcription start site region 31039
Phtf1 3 103968110 to 104007490 39380 + protein coding gene putative homeodomain transcription factor 1
Tssr34872 3 103968278 to 103968321 43 - TSS region transcription start site region 34872
Tssr31040 3 103968327 to 103968394 67 + TSS region transcription start site region 31040
Tssr31041 3 103968629 to 103968661 32 + TSS region transcription start site region 31041
Tssr31042 3 103988337 to 103988386 49 + TSS region transcription start site region 31042
Magi3 3 104013259 to 104220374 207115 - protein coding gene membrane associated guanylate kinase, WW and PDZ domain containing 3
Gm42696 3 104057000 to 104058141 1141 - sense intronic lncRNA gene predicted gene 42696
9530097N15Rik 3 104078435 to 104079502 1067 - sense intronic lncRNA gene RIKEN cDNA 9530097N15 gene
Tssr34873 3 104089533 to 104089563 30 - TSS region transcription start site region 34873
Gm23830 3 104092381 to 104092482 101 + snRNA gene predicted gene, 23830
Gm42700 3 104095444 to 104097880 2436 - sense intronic lncRNA gene predicted gene 42700
Gm42699 3 104114039 to 104115695 1656 - sense intronic lncRNA gene predicted gene 42699
Gm17956 3 104129447 to 104130253 806 + pseudogene predicted gene, 17956
Gm42702 3 104135785 to 104140001 4216 - sense intronic lncRNA gene predicted gene 42702
Gm42701 3 104144199 to 104145855 1656 - sense intronic lncRNA gene predicted gene 42701
Gm43258 3 104149756 to 104151705 1949 - sense intronic lncRNA gene predicted gene 43258
C030032O16Rik 3 104155533 to 104156248 715 - sense intronic lncRNA gene RIKEN cDNA C030032O16 gene
Gm43259 3 104163924 to 104167200 3276 - sense intronic lncRNA gene predicted gene 43259
Tssr34874 3 104171471 to 104171473 2 - TSS region transcription start site region 34874
Tssr34875 3 104174614 to 104174619 5 - TSS region transcription start site region 34875
Gm43260 3 104180612 to 104183041 2429 - sense intronic lncRNA gene predicted gene 43260
Gm43256 3 104187103 to 104190193 3090 - sense intronic lncRNA gene predicted gene 43256
D3Wsu167e 3 104193194 to 104193442 248 DNA segment DNA segment, Chr 3, Wayne State University 167, expressed
Gm23077 3 104201110 to 104201225 115 + snoRNA gene predicted gene, 23077
Cpgi13643 3 104219226 to 104221004 1778 CpG island CpG island 13643
Tssr34876 3 104220346 to 104220357 11 - TSS region transcription start site region 34876
Tssr34877 3 104220360 to 104220378 18 - TSS region transcription start site region 34877
Tssr31043 3 104220871 to 104220888 17 + TSS region transcription start site region 31043
2010002M09Rik 3 104220882 to 104222080 1198 unclassified gene RIKEN cDNA 2010002M09 gene
Twq3 3 104320699 to 104320699 0 QTL testis weight QTL 3
Gm5546 3 104351783 to 104360318 8535 - lincRNA gene predicted gene 5546
Gm38412 3 104409161 to 104417535 8374 + antisense lncRNA gene predicted gene, 38412
Gm9273 3 104417613 to 104418327 714 - pseudogene predicted gene 9273
Lrig2 3 104453980 to 104511918 57938 - protein coding gene leucine-rich repeats and immunoglobulin-like domains 2
Tssr34878 3 104454586 to 104454590 4 - TSS region transcription start site region 34878
Tssr31044 3 104456623 to 104456625 2 + TSS region transcription start site region 31044
Gm43696 3 104470660 to 104476730 6070 - sense intronic lncRNA gene predicted gene 43696
Tssr34879 3 104476704 to 104476707 3 - TSS region transcription start site region 34879
Tssr994 3 104478802 to 104478823 21 + TSS region transcription start site region 994
A530041M06Rik 3 104499320 to 104501607 2287 - sense intronic lncRNA gene RIKEN cDNA A530041M06 gene
4930509H03Rik 3 104510099 to 104511313 1214 - sense intronic lncRNA gene RIKEN cDNA 4930509H03 gene
Cpgi13644 3 104511255 to 104512434 1179 CpG island CpG island 13644
Tssr995 3 104511749 to 104511758 9 - TSS region transcription start site region 995
Tssr34880 3 104511812 to 104511933 121 - TSS region transcription start site region 34880
Tssr34881 3 104523684 to 104523700 16 - TSS region transcription start site region 34881
Tssr34882 3 104523770 to 104523789 19 - TSS region transcription start site region 34882
Gm34490 3 104555386 to 104571857 16471 + lncRNA gene predicted gene, 34490
D3Ertd711e 3 104571622 to 104571843 221 DNA segment DNA segment, Chr 3, ERATO Doi 711, expressed
Gm26091 3 104601158 to 104601239 81 - snRNA gene predicted gene, 26091
Gm43582 3 104634315 to 104634657 342 - pseudogene predicted gene 43582
Tssr34883 3 104637557 to 104637561 4 - TSS region transcription start site region 34883
Cpgi13645 3 104637961 to 104639592 1631 CpG island CpG island 13645
Tssr34884 3 104638429 to 104638442 13 - TSS region transcription start site region 34884
Tssr34885 3 104638532 to 104638542 10 - TSS region transcription start site region 34885
Tssr31045 3 104638658 to 104638675 17 + TSS region transcription start site region 31045
Slc16a1 3 104638668 to 104658462 19794 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 1
Gm43581 3 104642994 to 104645857 2863 + sense intronic lncRNA gene predicted gene 43581
Tssr31046 3 104645032 to 104645036 4 + TSS region transcription start site region 31046
Gm43585 3 104646241 to 104647643 1402 + sense intronic lncRNA gene predicted gene 43585
Tssr31047 3 104655867 to 104655869 2 + TSS region transcription start site region 31047
Tssr31048 3 104657090 to 104657094 4 + TSS region transcription start site region 31048
Gm29561 3 104661343 to 104664139 2796 - lincRNA gene predicted gene 29561
Gm29560 3 104667032 to 104670010 2978 - protein coding gene predicted gene 29560
Cpgi13646 3 104675349 to 104675681 332 CpG island CpG island 13646
Gm34548 3 104677551 to 104680628 3077 - lncRNA gene predicted gene, 34548
Gm24223 3 104700870 to 104700959 89 + snRNA gene predicted gene, 24223
Cpgi13647 3 104700981 to 104701263 282 CpG island CpG island 13647
Gm29572 3 104706585 to 104710910 4325 + protein coding gene predicted gene 29572
Gm6485 3 104752727 to 104753165 438 - pseudogene predicted gene 6485
Gm43584 3 104753123 to 104773270 20147 - unclassified non-coding RNA gene predicted gene 43584
Cpgi13648 3 104758389 to 104758717 328 CpG island CpG island 13648
Tafa3 3 104767405 to 104779589 12184 - protein coding gene TAFA chemokine like family member 3
Tssr31049 3 104771734 to 104771742 8 + TSS region transcription start site region 31049
Tssr34886 3 104776249 to 104776251 2 - TSS region transcription start site region 34886
Tssr34887 3 104777231 to 104777235 4 - TSS region transcription start site region 34887
Cpgi13649 3 104777244 to 104777595 351 CpG island CpG island 13649
Tssr34888 3 104777483 to 104777493 10 - TSS region transcription start site region 34888
Cpgi13650 3 104780804 to 104781931 1127 CpG island CpG island 13650
Tssr31050 3 104780821 to 104780829 8 + TSS region transcription start site region 31050
Tssr34889 3 104780987 to 104781002 15 - TSS region transcription start site region 34889
Tssr31051 3 104781048 to 104781128 80 + TSS region transcription start site region 31051
Ppm1j 3 104781056 to 104786018 4962 + protein coding gene protein phosphatase 1J
Tssr31052 3 104781129 to 104781143 14 + TSS region transcription start site region 31052
Tssr31053 3 104782321 to 104782336 15 + TSS region transcription start site region 31053
Tssr31054 3 104782338 to 104782352 14 + TSS region transcription start site region 31054
Tssr31055 3 104782363 to 104782380 17 + TSS region transcription start site region 31055
Cpgi13651 3 104788544 to 104789697 1153 CpG island CpG island 13651
Tssr31056 3 104788572 to 104788595 23 + TSS region transcription start site region 31056
Tssr31057 3 104788793 to 104788841 48 + TSS region transcription start site region 31057
Tssr31058 3 104788842 to 104788855 13 + TSS region transcription start site region 31058
Tssr31059 3 104789026 to 104789046 20 + TSS region transcription start site region 31059
Rhoc 3 104789034 to 104794459 5425 + protein coding gene ras homolog family member C
Tssr34890 3 104792045 to 104792062 17 - TSS region transcription start site region 34890
Tssr31060 3 104794021 to 104794041 20 + TSS region transcription start site region 31060
Tssr31061 3 104794082 to 104794110 28 + TSS region transcription start site region 31061
Tssr31062 3 104794281 to 104794305 24 + TSS region transcription start site region 31062
Tssr34891 3 104794456 to 104794459 3 - TSS region transcription start site region 34891
Mov10 3 104794836 to 104818563 23727 - protein coding gene Moloney leukemia virus 10
Tssr31063 3 104795895 to 104795907 12 + TSS region transcription start site region 31063
Tssr34892 3 104804637 to 104804650 13 - TSS region transcription start site region 34892
Tssr34893 3 104805465 to 104805472 7 - TSS region transcription start site region 34893
Cpgi13652 3 104817450 to 104818654 1204 CpG island CpG island 13652
Tssr34894 3 104818082 to 104818105 23 - TSS region transcription start site region 34894
Tssr34895 3 104818106 to 104818128 22 - TSS region transcription start site region 34895
Tssr34896 3 104818178 to 104818187 9 - TSS region transcription start site region 34896
Tssr34897 3 104818224 to 104818237 13 - TSS region transcription start site region 34897
Tssr34898 3 104818266 to 104818293 27 - TSS region transcription start site region 34898
Tssr34899 3 104818322 to 104818333 11 - TSS region transcription start site region 34899
Tssr34900 3 104818480 to 104818504 24 - TSS region transcription start site region 34900
Tssr34901 3 104818539 to 104818572 33 - TSS region transcription start site region 34901
Capza1 3 104822785 to 104864505 41720 - protein coding gene capping protein (actin filament) muscle Z-line, alpha 1
Gm42658 3 104826330 to 104827904 1574 - sense intronic lncRNA gene predicted gene 42658
Gm42659 3 104836430 to 104838183 1753 - sense intronic lncRNA gene predicted gene 42659
Tssr34902 3 104837286 to 104837290 4 - TSS region transcription start site region 34902
Tssr34903 3 104863818 to 104863828 10 - TSS region transcription start site region 34903
Tssr34904 3 104863868 to 104863871 3 - TSS region transcription start site region 34904
Tssr31064 3 104863981 to 104863986 5 + TSS region transcription start site region 31064
Cpgi13653 3 104864164 to 104865564 1400 CpG island CpG island 13653
Tssr34905 3 104864420 to 104864450 30 - TSS region transcription start site region 34905
Tssr31065 3 104864459 to 104864512 53 + TSS region transcription start site region 31065
St7l 3 104864506 to 104930064 65558 + protein coding gene suppression of tumorigenicity 7-like
Tssr34906 3 104864964 to 104865045 81 - TSS region transcription start site region 34906
Tssr31066 3 104865062 to 104865099 37 + TSS region transcription start site region 31066
Tssr34907 3 104865088 to 104865117 29 - TSS region transcription start site region 34907
Tssr31067 3 104908596 to 104908605 9 + TSS region transcription start site region 31067
Gm4525 3 104915910 to 104916163 253 - pseudogene predicted gene 4525
Tssr34908 3 104916194 to 104916196 2 - TSS region transcription start site region 34908
D3Mit214 3 104922346 to 104922495 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 214
Wnt2b 3 104945272 to 104961921 16649 - protein coding gene wingless-type MMTV integration site family, member 2B
Gm43846 3 104957442 to 104958373 931 - sense intronic lncRNA gene predicted gene 43846
Cpgi13654 3 104961087 to 104962654 1567 CpG island CpG island 13654
Tssr34909 3 104961668 to 104961686 18 - TSS region transcription start site region 34909
Tssr34910 3 104961695 to 104961728 33 - TSS region transcription start site region 34910
Tssr34911 3 104961734 to 104961745 11 - TSS region transcription start site region 34911
Cpgi13655 3 104967631 to 104968401 770 CpG island CpG island 13655
Gm46819 3 104981598 to 104986200 4602 + lncRNA gene predicted gene, 46819
Cpgi13656 3 104992720 to 104993069 349 CpG island CpG island 13656
Gm40117 3 104994032 to 105004005 9973 + antisense lncRNA gene predicted gene, 40117
Cttnbp2nl 3 105001915 to 105053146 51231 - protein coding gene CTTNBP2 N-terminal like
Gm40116 3 105008062 to 105017762 9700 + lncRNA gene predicted gene, 40116
Tssr34912 3 105019964 to 105019968 4 - TSS region transcription start site region 34912
Tssr34913 3 105052560 to 105052574 14 - TSS region transcription start site region 34913
Cpgi13657 3 105052575 to 105053243 668 CpG island CpG island 13657
Tssr34914 3 105052687 to 105052717 30 - TSS region transcription start site region 34914
Tssr34915 3 105052916 to 105052938 22 - TSS region transcription start site region 34915
Tssr34916 3 105052948 to 105052987 39 - TSS region transcription start site region 34916
Tssr34917 3 105053125 to 105053151 26 - TSS region transcription start site region 34917
Tssr34918 3 105054876 to 105054884 8 - TSS region transcription start site region 34918
Cpgi13658 3 105058849 to 105059011 162 CpG island CpG island 13658
4930564D02Rik 3 105066844 to 105078806 11962 + protein coding gene RIKEN cDNA 4930564D02 gene
Tssr31068 3 105094991 to 105094996 5 + TSS region transcription start site region 31068
Gm40118 3 105107398 to 105134972 27574 + lncRNA gene predicted gene, 40118
Gm34837 3 105355052 to 105368345 13293 + lncRNA gene predicted gene, 34837
Tssr34919 3 105426534 to 105426541 7 - TSS region transcription start site region 34919
Tssr34920 3 105426562 to 105426569 7 - TSS region transcription start site region 34920
Tssr34921 3 105426590 to 105426601 11 - TSS region transcription start site region 34921
Kcnd3os 3 105448190 to 105452955 4765 - antisense lncRNA gene potassium voltage-gated channel, Shal-related family, member 3, opposite strand
Cpgi13659 3 105451007 to 105453212 2205 CpG island CpG island 13659
Tssr31069 3 105451849 to 105451937 88 + TSS region transcription start site region 31069
Tssr31070 3 105451967 to 105451974 7 + TSS region transcription start site region 31070
Tssr31071 3 105452104 to 105452145 41 + TSS region transcription start site region 31071
Tssr31072 3 105452149 to 105452177 28 + TSS region transcription start site region 31072
Tssr31073 3 105452326 to 105452365 39 + TSS region transcription start site region 31073
Kcnd3 3 105452330 to 105674002 221672 + protein coding gene potassium voltage-gated channel, Shal-related family, member 3
Tssr34922 3 105488033 to 105488064 31 - TSS region transcription start site region 34922
Tssr31074 3 105491534 to 105491544 10 + TSS region transcription start site region 31074
Gm43847 3 105502907 to 105504846 1939 + sense intronic lncRNA gene predicted gene 43847
Tssr31075 3 105526051 to 105526061 10 + TSS region transcription start site region 31075
Tssr31076 3 105558483 to 105558497 14 + TSS region transcription start site region 31076
Tssr996 3 105635691 to 105635693 2 + TSS region transcription start site region 996
Tssr31077 3 105639882 to 105639886 4 + TSS region transcription start site region 31077
Ddx20 3 105678270 to 105687574 9304 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 20