Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:10324909-13484924

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Impa1 3 10311956 to 10331439 19483 - protein coding gene inositol (myo)-1(or 4)-monophosphatase 1
Gm38303 3 10321712 to 10335681 13969 - protein coding gene predicted gene, 38303
Cpgi12981 3 10330983 to 10331583 600 CpG island CpG island 12981
Tssr32612 3 10331284 to 10331286 2 - TSS region transcription start site region 32612
Tssr32613 3 10331358 to 10331425 67 - TSS region transcription start site region 32613
Slc10a5 3 10331734 to 10335656 3922 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 5
Tssr32614 3 10335409 to 10335441 32 - TSS region transcription start site region 32614
Tssr32615 3 10335650 to 10335661 11 - TSS region transcription start site region 32615
Tssr32616 3 10335676 to 10335687 11 - TSS region transcription start site region 32616
Tssr32617 3 10335689 to 10335707 18 - TSS region transcription start site region 32617
Tssr32618 3 10335715 to 10335724 9 - TSS region transcription start site region 32618
Zfand1 3 10339953 to 10351317 11364 - protein coding gene zinc finger, AN1-type domain 1
Tssr28367 3 10342788 to 10342837 49 + TSS region transcription start site region 28367
Tssr32619 3 10346035 to 10346039 4 - TSS region transcription start site region 32619
Tssr32620 3 10346105 to 10346125 20 - TSS region transcription start site region 32620
Cpgi12982 3 10350925 to 10351566 641 CpG island CpG island 12982
Tssr28368 3 10350972 to 10350981 9 + TSS region transcription start site region 28368
Tssr32621 3 10351314 to 10351342 28 - TSS region transcription start site region 32621
Tssr28369 3 10351511 to 10351552 41 + TSS region transcription start site region 28369
Cpgi12983 3 10366857 to 10367247 390 CpG island CpG island 12983
Tssr28370 3 10366903 to 10366922 19 + TSS region transcription start site region 28370
Tssr28371 3 10366927 to 10366963 36 + TSS region transcription start site region 28371
Tssr28372 3 10366967 to 10366987 20 + TSS region transcription start site region 28372
Chmp4c 3 10366973 to 10391005 24032 + protein coding gene charged multivesicular body protein 4C
Tssr28373 3 10366992 to 10367001 9 + TSS region transcription start site region 28373
Tssr28374 3 10367009 to 10367026 17 + TSS region transcription start site region 28374
Snx16 3 10417817 to 10440102 22285 - protein coding gene sorting nexin 16
5430403G19Rik 3 10426593 to 10428865 2272 unclassified non-coding RNA gene RIKEN cDNA 5430403G19 gene
A630040H13Rik 3 10430763 to 10434206 3443 unclassified gene RIKEN cDNA A630040H13 gene
Cpgi12984 3 10439393 to 10440235 842 CpG island CpG island 12984
Tssr32622 3 10439960 to 10439977 17 - TSS region transcription start site region 32622
Tssr32623 3 10439995 to 10440006 11 - TSS region transcription start site region 32623
Tssr32624 3 10440008 to 10440022 14 - TSS region transcription start site region 32624
Tssr32625 3 10440054 to 10440127 73 - TSS region transcription start site region 32625
D3Mit265 3 10636379 to 10636517 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 265
Gm37831 3 10646316 to 10648102 1786 + unclassified gene predicted gene, 37831
Gm18692 3 10753918 to 10754428 510 - pseudogene predicted gene, 18692
Tssr28375 3 10760335 to 10760380 45 + TSS region transcription start site region 28375
Gm37244 3 10772919 to 10774899 1980 - unclassified gene predicted gene, 37244
Gm33551 3 10848895 to 10857537 8642 + lncRNA gene predicted gene, 33551
Tssr32626 3 10971968 to 10971973 5 - TSS region transcription start site region 32626
Gm22795 3 10975469 to 10975586 117 - snoRNA gene predicted gene, 22795
Gm21631 3 11008850 to 11009603 753 - pseudogene predicted gene, 21631
Gm8910 3 11013514 to 11015199 1685 - pseudogene predicted gene 8910
Tssr32627 3 11015192 to 11015193 1 - TSS region transcription start site region 32627
Gm37832 3 11044170 to 11044358 188 - pseudogene predicted gene, 37832
Gm22547 3 11154337 to 11154437 100 + miRNA gene predicted gene, 22547
Tssr32628 3 11211244 to 11211253 9 - TSS region transcription start site region 32628
Tssr32629 3 11214202 to 11214211 9 - TSS region transcription start site region 32629
Gm8919 3 11658497 to 11659510 1013 - pseudogene predicted gene 8919
Gm10745 3 11823229 to 11844359 21130 - lincRNA gene predicted gene 10745
Tssr32630 3 11904909 to 11904924 15 - TSS region transcription start site region 32630
Tssr820 3 12155268 to 12155287 19 + TSS region transcription start site region 820
Gm37996 3 12384243 to 12384609 366 - pseudogene predicted gene, 37996
Gm18431 3 12521465 to 12522489 1024 + pseudogene predicted gene, 18431
Gm2429 3 12631260 to 12631845 585 + pseudogene predicted gene 2429
D3Mit90 3 12683956 to 12684099 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 90
Gm18232 3 12829051 to 12831568 2517 + pseudogene predicted gene, 18232
Tssr28376 3 12855785 to 12855795 10 + TSS region transcription start site region 28376
Gm8935 3 12855836 to 12858633 2797 + pseudogene predicted pseudogene 8935
Gm8939 3 12892451 to 12893414 963 - pseudogene predicted gene 8939
Gm38317 3 12975359 to 12975701 342 + pseudogene predicted gene, 38317
Gm37813 3 13288197 to 13291891 3694 + unclassified gene predicted gene, 37813
Gm37197 3 13429558 to 13429958 400 + pseudogene predicted gene, 37197
Gm2464 3 13470439 to 13471829 1390 - lincRNA gene predicted gene 2464
Cpgi12985 3 13471360 to 13472187 827 CpG island CpG island 12985
Tssr28377 3 13471608 to 13471635 27 + TSS region transcription start site region 28377
Tssr28378 3 13471637 to 13471733 96 + TSS region transcription start site region 28378
Ralyl 3 13471655 to 14182287 710632 + protein coding gene RALY RNA binding protein-like
Tssr28379 3 13471747 to 13471758 11 + TSS region transcription start site region 28379
Tssr28380 3 13472023 to 13472030 7 + TSS region transcription start site region 28380
Tssr28381 3 13472450 to 13472469 19 + TSS region transcription start site region 28381
Tssr821 3 13472633 to 13472670 37 + TSS region transcription start site region 821
Cpgi12986 3 13472730 to 13473423 693 CpG island CpG island 12986
Tssr28382 3 13472871 to 13472927 56 + TSS region transcription start site region 28382
Tssr28383 3 13473205 to 13473218 13 + TSS region transcription start site region 28383