Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:84650748-84750860

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctnnd1 2 84600071 to 84650765 50694 - protein coding gene catenin (cadherin associated protein), delta 1
Gm28635 2 84601439 to 84678041 76602 - protein coding gene predicted gene 28635
Tssr25016 2 84650714 to 84650749 35 - TSS region transcription start site region 25016
Tssr25017 2 84650760 to 84650771 11 - TSS region transcription start site region 25017
Tssr18669 2 84650901 to 84650945 44 + TSS region transcription start site region 18669
Cpgi11859 2 84658845 to 84659419 574 CpG island CpG island 11859
Tssr18670 2 84659065 to 84659082 17 + TSS region transcription start site region 18670
Btbd18 2 84659079 to 84668780 9701 + protein coding gene BTB (POZ) domain containing 18
Selenoh 2 84669215 to 84670708 1493 - protein coding gene selenoprotein H
Tssr18671 2 84670226 to 84670244 18 + TSS region transcription start site region 18671
Cpgi11860 2 84670241 to 84670983 742 CpG island CpG island 11860
Tssr25018 2 84670589 to 84670600 11 - TSS region transcription start site region 25018
Tssr25019 2 84670614 to 84670625 11 - TSS region transcription start site region 25019
Tssr25020 2 84670634 to 84670641 7 - TSS region transcription start site region 25020
Tssr25021 2 84670650 to 84670657 7 - TSS region transcription start site region 25021
Tssr25022 2 84670659 to 84670726 67 - TSS region transcription start site region 25022
Tssr25023 2 84670727 to 84670742 15 - TSS region transcription start site region 25023
Tmx2 2 84671311 to 84678828 7517 - protein coding gene thioredoxin-related transmembrane protein 2
Cpgi11861 2 84677720 to 84678793 1073 CpG island CpG island 11861
Tssr25024 2 84678051 to 84678083 32 - TSS region transcription start site region 25024
Tssr18672 2 84678396 to 84678450 54 + TSS region transcription start site region 18672
Med19 2 84678402 to 84688215 9813 + protein coding gene mediator complex subunit 19
Tssr18673 2 84678455 to 84678458 3 + TSS region transcription start site region 18673
Tssr18674 2 84678474 to 84678477 3 + TSS region transcription start site region 18674
Tssr18675 2 84678565 to 84678620 55 + TSS region transcription start site region 18675
Tssr25025 2 84678837 to 84678850 13 - TSS region transcription start site region 25025
Zdhhc5 2 84687970 to 84715180 27210 - protein coding gene zinc finger, DHHC domain containing 5
Tssr25026 2 84691994 to 84692017 23 - TSS region transcription start site region 25026
n-R5s200 2 84700748 to 84700860 112 - rRNA gene nuclear encoded rRNA 5S 200
Gm27942 2 84703262 to 84703362 100 + snRNA gene predicted gene, 27942
Tssr25027 2 84710868 to 84710883 15 - TSS region transcription start site region 25027
Tssr25028 2 84712022 to 84712023 1 - TSS region transcription start site region 25028
Cpgi11862 2 84714429 to 84716207 1778 CpG island CpG island 11862
Gm32289 2 84714509 to 84717752 3243 + protein coding gene predicted gene, 32289
Tssr25029 2 84715024 to 84715103 79 - TSS region transcription start site region 25029
Tssr25030 2 84715110 to 84715121 11 - TSS region transcription start site region 25030
Tssr25031 2 84715128 to 84715151 23 - TSS region transcription start site region 25031
Tssr25032 2 84715160 to 84715218 58 - TSS region transcription start site region 25032
Tssr25033 2 84715263 to 84715275 12 - TSS region transcription start site region 25033
Tssr25034 2 84715277 to 84715287 10 - TSS region transcription start site region 25034
Tssr25035 2 84715294 to 84715305 11 - TSS region transcription start site region 25035
Tssr25036 2 84715310 to 84715324 14 - TSS region transcription start site region 25036
Clp1 2 84723122 to 84727268 4146 - protein coding gene CLP1, cleavage and polyadenylation factor I subunit
Cpgi11863 2 84727194 to 84727777 583 CpG island CpG island 11863
Tssr25037 2 84727236 to 84727299 63 - TSS region transcription start site region 25037
Tssr25038 2 84727355 to 84727372 17 - TSS region transcription start site region 25038
Tssr18676 2 84727674 to 84727680 6 + TSS region transcription start site region 18676
Tssr18677 2 84734050 to 84734107 57 + TSS region transcription start site region 18677
Ypel4 2 84734058 to 84738655 4597 + protein coding gene yippee like 4
Cpgi11864 2 84736715 to 84736960 245 CpG island CpG island 11864
Tssr18678 2 84738135 to 84738138 3 + TSS region transcription start site region 18678
Mir130a 2 84741115 to 84741178 63 - miRNA gene microRNA 130a
Gm19426 2 84742169 to 84743655 1486 - protein coding gene predicted gene, 19426
Cpgi11865 2 84742752 to 84743969 1217 CpG island CpG island 11865
Tssr18679 2 84742921 to 84742939 18 + TSS region transcription start site region 18679
Tssr18680 2 84742998 to 84743012 14 + TSS region transcription start site region 18680
Tssr25039 2 84743692 to 84743701 9 - TSS region transcription start site region 25039
Tssr25040 2 84743749 to 84743764 15 - TSS region transcription start site region 25040
Tssr25041 2 84743767 to 84743783 16 - TSS region transcription start site region 25041
Tssr18681 2 84743880 to 84743909 29 + TSS region transcription start site region 18681