Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:74705812-74996748

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aips2 2 65119051 to 74881866 9762815 QTL autoimmune pancreatitis severity 2
Del(2Hoxd1-Hoxd13)54Ddu 2 74668310 to 74765142 96832 chromosomal deletion deletion, Chr 2, Denis Duboule 54
Del(2Hoxd1-Hoxd13)1Ddu 2 74668310 to 74765142 96832 complex/cluster/region deletion, Chr 2, Denis Duboule 1
Del(2Hoxd1-Hoxd13)12Ddu 2 74668310 to 74765142 96832 chromosomal deletion deletion, Chr 2, Denis Duboule 12
Del(2Hoxd8-Hoxd13)11Ddu 2 74668310 to 74707933 39623 chromosomal deletion deletion, Chr 2, Denis Duboule 11
Del(2Hoxd8-Hoxd13)9Ddu 2 74668310 to 74707933 39623 chromosomal deletion deletion, Chr 2, Denis Duboule 9
Del(2Hoxd4-Hoxd13)30Ddu 2 74668310 to 74729160 60850 chromosomal deletion deletion, Chr 2, Denis Duboule 30
Del(2Hoxd4-Hoxd13)28Ddu 2 74668310 to 74729160 60850 chromosomal deletion deletion, Chr 2, Denis Duboule 28
Del(2Hoxd4-Hoxd11)36Ddu 2 74679558 to 74729160 49602 chromosomal deletion deletion, Chr 2, Denis Duboule 36
Del(2Hoxd8-Hoxd10)15Ddu 2 74691924 to 74707933 16009 chromosomal deletion deletion, Chr 2, Denis Duboule 15
Dp(2Hoxd8-Hoxd10)1Ddu 2 74691924 to 74707933 16009 chromosomal duplication duplication, Chr 2, Denis Duboule 1
Del(2Hoxd8-Hoxd10)21Ddu 2 74691924 to 74707933 16009 chromosomal deletion deletion, Chr 2, Denis Duboule 21
Del(2Hoxd1-Hoxd10)26Ddu 2 74691924 to 74765142 73218 chromosomal deletion deletion, Chr 2, Denis Duboule 26
Del(2Hoxd8-Hoxd9)22Ddu 2 74697763 to 74707933 10170 chromosomal deletion deletion, Chr 2, Denis Duboule 22
Del(2Hoxd1-Hoxd9)63Ddu 2 74697763 to 74765142 67379 chromosomal deletion deletion, Chr 2, Denis Duboule 63
Del(2Hoxd4-Hoxd9)40Ddu 2 74697763 to 74729160 31397 chromosomal deletion deletion, Chr 2, Denis Duboule 40
Del(2Hoxd8-Hoxd9)18Ddu 2 74697763 to 74707933 10170 chromosomal deletion deletion, Chr 2, Denis Duboule 18
Dp(2Hoxd8-Hoxd9)2Ddu 2 74697763 to 74707933 10170 chromosomal duplication duplication, Chr 2, Denis Duboule 2
Gm38462 2 74702998 to 74712058 9060 - protein coding gene predicted gene, 38462
Cpgi11800 2 74704006 to 74706238 2232 CpG island CpG island 11800
Hoxd8 2 74704615 to 74707933 3318 + protein coding gene homeobox D8
Tssr24623 2 74705815 to 74705833 18 - TSS region transcription start site region 24623
Tssr18431 2 74709713 to 74709714 1 + TSS region transcription start site region 18431
Hoxd3os1 2 74710044 to 74716130 6086 - antisense lncRNA gene homeobox D3, opposite strand 1
Cpgi11801 2 74711739 to 74712591 852 CpG island CpG island 11801
Tssr18432 2 74711858 to 74711873 15 + TSS region transcription start site region 18432
Tssr18433 2 74711888 to 74711908 20 + TSS region transcription start site region 18433
Tssr18434 2 74711911 to 74711939 28 + TSS region transcription start site region 18434
Tssr18435 2 74711958 to 74712000 42 + TSS region transcription start site region 18435
Hoxd3 2 74711993 to 74748271 36278 + protein coding gene homeobox D3
Tssr18436 2 74712121 to 74712157 36 + TSS region transcription start site region 18436
Tssr24624 2 74714263 to 74714296 33 - TSS region transcription start site region 24624
Cpgi11802 2 74714992 to 74715233 241 CpG island CpG island 11802
Cpgi11803 2 74715846 to 74716219 373 CpG island CpG island 11803
Tssr533 2 74715973 to 74715976 3 - TSS region transcription start site region 533
Tssr24625 2 74715989 to 74716000 11 - TSS region transcription start site region 24625
Tssr534 2 74716002 to 74716007 5 - TSS region transcription start site region 534
Tssr24626 2 74716020 to 74716027 7 - TSS region transcription start site region 24626
Tssr24627 2 74716124 to 74716135 11 - TSS region transcription start site region 24627
Tssr24628 2 74716137 to 74716157 20 - TSS region transcription start site region 24628
Tssr18437 2 74716988 to 74716995 7 + TSS region transcription start site region 18437
Del(2Hoxd1-Hoxd4)55Ddu 2 74721978 to 74765142 43164 chromosomal deletion deletion, Chr 2, Denis Duboule 55
Del(2Hoxd1-Hoxd4)56Ddu 2 74721978 to 74765142 43164 chromosomal deletion deletion, Chr 2, Denis Duboule 56
Hoxd4 2 74721978 to 74729160 7182 + protein coding gene homeobox D4
Tssr18438 2 74722052 to 74722074 22 + TSS region transcription start site region 18438
Cpgi11804 2 74723306 to 74723643 337 CpG island CpG island 11804
Cpgi11805 2 74725320 to 74725624 304 CpG island CpG island 11805
Mir10b 2 74726070 to 74726137 67 + miRNA gene microRNA 10b
Gm28230 2 74726728 to 74747918 21190 + protein coding gene predicted gene 28230
Tssr18439 2 74727190 to 74727201 11 + TSS region transcription start site region 18439
Cpgi11806 2 74727226 to 74727838 612 CpG island CpG island 11806
Tssr18440 2 74727249 to 74727270 21 + TSS region transcription start site region 18440
Tssr18441 2 74729829 to 74729833 4 + TSS region transcription start site region 18441
AI448005 2 74731335 to 74731751 416 unclassified gene expressed sequence AI448005
Cpgi11807 2 74732635 to 74733514 879 CpG island CpG island 11807
Cpgi11808 2 74735412 to 74735700 288 CpG island CpG island 11808
Cpgi11809 2 74736164 to 74736765 601 CpG island CpG island 11809
Tssr535 2 74736396 to 74736435 39 + TSS region transcription start site region 535
Cpgi11810 2 74740289 to 74740715 426 CpG island CpG island 11810
Tssr18442 2 74745676 to 74745681 5 + TSS region transcription start site region 18442
Tssr18443 2 74745684 to 74745693 9 + TSS region transcription start site region 18443
Tssr18444 2 74745719 to 74745758 39 + TSS region transcription start site region 18444
Cpgi11811 2 74745986 to 74747450 1464 CpG island CpG island 11811
Haglr 2 74748422 to 74762896 14474 - bidirectional promoter lncRNA gene Hoxd antisense growth associated long non-coding RNA
Cpgi11812 2 74749349 to 74750312 963 CpG island CpG island 11812
Cpgi11813 2 74752515 to 74753644 1129 CpG island CpG island 11813
Gm14424 2 74752684 to 74753744 1060 + lincRNA gene predicted gene 14424
Tssr18445 2 74752976 to 74752989 13 + TSS region transcription start site region 18445
Tssr24629 2 74753430 to 74753444 14 - TSS region transcription start site region 24629
Tssr24630 2 74753455 to 74753463 8 - TSS region transcription start site region 24630
Tssr24631 2 74753474 to 74753478 4 - TSS region transcription start site region 24631
Gm14426 2 74754455 to 74755097 642 + lincRNA gene predicted gene 14426
Cpgi11814 2 74762650 to 74763708 1058 CpG island CpG island 11814
Hoxd1 2 74762980 to 74765142 2162 + protein coding gene homeobox D1
D2Tfv14 2 74764670 to 74764895 225 DNA segment DNA segment, Chr 2, Thomas F. Vogt 14
Cpgi11815 2 74825669 to 74826439 770 CpG island CpG island 11815
Tssr18446 2 74825802 to 74825858 56 + TSS region transcription start site region 18446
Mtx2 2 74825812 to 74876748 50936 + protein coding gene metaxin 2
Tssr18447 2 74825864 to 74825879 15 + TSS region transcription start site region 18447
Gm14425 2 74855706 to 74856305 599 + pseudogene predicted gene 14425
Gm14427 2 74886372 to 74887006 634 - pseudogene predicted gene 14427
Tssr536 2 74887028 to 74887029 1 - TSS region transcription start site region 536
n-R5s198 2 74935415 to 74935514 99 - rRNA gene nuclear encoded rRNA 5S 198