Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:74650412-74820700

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
In(2Hoxd11;Itga6)1Ddu 2 71786886 to 74687016 2900130 chromosomal inversion inversion, Chr 2, Denis Duboule 1
In(2Itga6-Evx2)44Ddu 2 71786886 to 74659557 2872671 chromosomal inversion inversion, Chr 2, Denis Duboule 44
Del(2Evx2-Atf2)53Ddu 2 73816509 to 74659557 843048 chromosomal deletion deletion, Chr 2, Denis Duboule 53
Dp(2Evx2-Atf2)59Ddu 2 73816509 to 74659557 843048 chromosomal duplication duplication, Chr 2, Denis Duboule 59
Evx2 2 74652991 to 74659557 6566 - protein coding gene even-skipped homeobox 2
Cpgi11783 2 74654936 to 74656714 1778 CpG island CpG island 11783
Cpgi11784 2 74657418 to 74658188 770 CpG island CpG island 11784
D2Tfv7 2 74657541 to 74657770 229 DNA segment DNA segment, Chr 2, Thomas F. Vogt 7
Cpgi11785 2 74658543 to 74659769 1226 CpG island CpG island 11785
Tssr24617 2 74659789 to 74659802 13 - TSS region transcription start site region 24617
Tssr24618 2 74659835 to 74659846 11 - TSS region transcription start site region 24618
Tssr24619 2 74659852 to 74659865 13 - TSS region transcription start site region 24619
Cpgi11786 2 74660916 to 74661239 323 CpG island CpG island 11786
Tssr24620 2 74661194 to 74661201 7 - TSS region transcription start site region 24620
Tssr24621 2 74661243 to 74661252 9 - TSS region transcription start site region 24621
Gm31790 2 74661551 to 74666891 5340 + lncRNA gene predicted gene, 31790
Cpgi11787 2 74661774 to 74662033 259 CpG island CpG island 11787
Cpgi11788 2 74667222 to 74667453 231 CpG island CpG island 11788
Tssr18389 2 74667267 to 74667273 6 + TSS region transcription start site region 18389
Cpgi11789 2 74667627 to 74669086 1459 CpG island CpG island 11789
Tssr18390 2 74668207 to 74668229 22 + TSS region transcription start site region 18390
Hoxd13 2 74668310 to 74671599 3289 + protein coding gene homeobox D13
Del(2Hoxd10-Hoxd13)38Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 38
Del(2Hoxd10-Hoxd13)7Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 7
Del(2Hoxd8-Hoxd13)11Ddu 2 74668310 to 74707933 39623 chromosomal deletion deletion, Chr 2, Denis Duboule 11
Del(2Hoxd9-Hoxd13)8Ddu 2 74668310 to 74700208 31898 chromosomal deletion deletion, Chr 2, Denis Duboule 8
Del(2Hoxd10-Hoxd13)10Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 10
Del(2Hoxd12-Hoxd13)6Ddu 2 74668310 to 74677705 9395 chromosomal deletion deletion, Chr 2, Denis Duboule 6
Del(2Hoxd1-Hoxd13)12Ddu 2 74668310 to 74765142 96832 chromosomal deletion deletion, Chr 2, Denis Duboule 12
Del(2Hoxd1-Hoxd13)1Ddu 2 74668310 to 74765142 96832 complex/cluster/region deletion, Chr 2, Denis Duboule 1
Del(2Hoxd1-Hoxd13)54Ddu 2 74668310 to 74765142 96832 chromosomal deletion deletion, Chr 2, Denis Duboule 54
Dp(2Hoxd11-Hoxd13)4Ddu 2 74668310 to 74687016 18706 chromosomal duplication duplication, Chr 2, Denis Duboule 4
Del(2Hoxd4-Hoxd13)28Ddu 2 74668310 to 74729160 60850 chromosomal deletion deletion, Chr 2, Denis Duboule 28
Del(2Hoxd4-Hoxd13)30Ddu 2 74668310 to 74729160 60850 chromosomal deletion deletion, Chr 2, Denis Duboule 30
Del(2Hoxd8-Hoxd13)9Ddu 2 74668310 to 74707933 39623 chromosomal deletion deletion, Chr 2, Denis Duboule 9
Del(2Hoxd11-Hoxd13)16Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 16
Del(2Hoxd11-Hoxd13)27Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 27
Del(2Hoxd11-Hoxd13)29Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 29
Del(2Hoxd11-Hoxd13)2Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 1
Del(2Hoxd12-Hoxd13)35Ddu 2 74668310 to 74677705 9395 chromosomal deletion deletion, Chr 2, Denis Duboule 35
Del(2Hoxd12-Hoxd13)41Ddu 2 74668310 to 74677705 9395 chromosomal deletion deletion, Chr 2, Denis Duboule 41
Del(2Hoxd12-Hoxd13)5Ddu 2 74668310 to 74677705 9395 chromosomal deletion deletion, Chr 2, Denis Duboule 5
Cpgi11790 2 74672711 to 74673330 619 CpG island CpG island 11790
Cpgi11791 2 74673819 to 74674211 392 CpG island CpG island 11791
Tssr532 2 74673902 to 74673926 24 + TSS region transcription start site region 532
Tssr18391 2 74673952 to 74673955 3 + TSS region transcription start site region 18391
Tssr18392 2 74675007 to 74675032 25 + TSS region transcription start site region 18392
Hoxd12 2 74675013 to 74677705 2692 + protein coding gene homeobox D12
Del(2Hoxd11-Hoxd12)34Ddu 2 74675013 to 74687016 12003 chromosomal deletion deletion, Chr 2, Denis Duboule 34
Del(2Hoxd9-Hoxd12)20Ddu 2 74675013 to 74700208 25195 chromosomal deletion deletion, Chr 2, Denis Duboule 20
Del(2Hoxd10-Hoxd12)19Ddu 2 74675013 to 74695105 20092 chromosomal deletion deletion, Chr 2, Denis Duboule 19
Dp(2Hoxd11-Hoxd12)5Ddu 2 74675013 to 74687016 12003 chromosomal duplication duplication, Chr 2, Denis Duboule 5
Tssr18393 2 74675068 to 74675086 18 + TSS region transcription start site region 18393
Cpgi11792 2 74675076 to 74676044 968 CpG island CpG island 11792
Tssr18394 2 74675092 to 74675102 10 + TSS region transcription start site region 18394
Tssr18395 2 74679552 to 74679564 12 + TSS region transcription start site region 18395
Hoxd11 2 74679558 to 74687016 7458 + protein coding gene homeobox D11
Del(2Hoxd10-Hoxd11)32Ddu 2 74679558 to 74695105 15547 chromosomal deletion deletion, Chr 2, Denis Duboule 32
Del(2Hoxd4-Hoxd11)36Ddu 2 74679558 to 74729160 49602 chromosomal deletion deletion, Chr 2, Denis Duboule 36
Cpgi11793 2 74679561 to 74680747 1186 CpG island CpG island 11793
Tssr18396 2 74679668 to 74679681 13 + TSS region transcription start site region 18396
Tssr18397 2 74679685 to 74679701 16 + TSS region transcription start site region 18397
Tssr18398 2 74680630 to 74680661 31 + TSS region transcription start site region 18398
Cpgi11794 2 74681563 to 74683961 2398 CpG island CpG island 11794
Tssr18399 2 74681991 to 74682007 16 + TSS region transcription start site region 18399
Tssr18400 2 74682018 to 74682030 12 + TSS region transcription start site region 18400
Tssr18401 2 74682286 to 74682326 40 + TSS region transcription start site region 18401
Gm28309 2 74683446 to 74694194 10748 + unclassified non-coding RNA gene predicted gene 28309
Tssr18402 2 74683459 to 74683468 9 + TSS region transcription start site region 18402
Tssr18403 2 74683833 to 74683844 11 + TSS region transcription start site region 18403
Tssr18404 2 74683893 to 74683901 8 + TSS region transcription start site region 18404
D2Mit271 2 74684815 to 74684955 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 271
D2Tfv9 2 74684828 to 74684972 144 DNA segment DNA segment, Chr 2, Thomas F. Vogt 9
Tssr18405 2 74686553 to 74686557 4 + TSS region transcription start site region 18405
Cpgi11795 2 74687456 to 74688047 591 CpG island CpG island 11795
Cpgi11796 2 74691167 to 74691954 787 CpG island CpG island 11796
Tssr24622 2 74691758 to 74691779 21 - TSS region transcription start site region 24622
Tssr18406 2 74691860 to 74691869 9 + TSS region transcription start site region 18406
Tssr18407 2 74691885 to 74691896 11 + TSS region transcription start site region 18407
Tssr18408 2 74691913 to 74691940 27 + TSS region transcription start site region 18408
Hoxd10 2 74691924 to 74695105 3181 + protein coding gene homeobox D10
Del(2Hoxd8-Hoxd10)15Ddu 2 74691924 to 74707933 16009 chromosomal deletion deletion, Chr 2, Denis Duboule 15
Del(2Hoxd1-Hoxd10)26Ddu 2 74691924 to 74765142 73218 chromosomal deletion deletion, Chr 2, Denis Duboule 26
Del(2Hoxd8-Hoxd10)21Ddu 2 74691924 to 74707933 16009 chromosomal deletion deletion, Chr 2, Denis Duboule 21
Del(2Hoxd9-Hoxd10)14Ddu 2 74691924 to 74700208 8284 chromosomal deletion deletion, Chr 2, Denis Duboule 14
Dp(2Hoxd8-Hoxd10)1Ddu 2 74691924 to 74707933 16009 chromosomal duplication duplication, Chr 2, Denis Duboule 1
Tssr18409 2 74691941 to 74691963 22 + TSS region transcription start site region 18409
Tssr18410 2 74691965 to 74691976 11 + TSS region transcription start site region 18410
Tssr18411 2 74692051 to 74692074 23 + TSS region transcription start site region 18411
Cpgi11797 2 74692341 to 74692894 553 CpG island CpG island 11797
Alpq2 2 74693773 to 74693944 171 QTL alcohol preference QTL 2
D2Mit37 2 74693773 to 74693944 171 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 37
Tssr18412 2 74695261 to 74695279 18 + TSS region transcription start site region 18412
Tssr18413 2 74695290 to 74695312 22 + TSS region transcription start site region 18413
Gm14396 2 74695520 to 74697365 1845 + lincRNA gene predicted gene 14396
D2Mit35 2 74696304 to 74696443 139 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 35
Cpgi11798 2 74696669 to 74696938 269 CpG island CpG island 11798
Gm28793 2 74696768 to 74697586 818 - antisense lncRNA gene predicted gene 28793
D2Mit38.1 2 74697225 to 74697407 182 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 38.1
D2Tfv10 2 74697234 to 74697506 272 DNA segment DNA segment, Chr 2, Thomas F. Vogt 10
D2Mit36 2 74697277 to 74697504 227 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 36
D2Mit38 2 74697308 to 74697498 190 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 38
Cpgi11799 2 74697483 to 74699325 1842 CpG island CpG island 11799
Tssr18414 2 74697663 to 74697674 11 + TSS region transcription start site region 18414
Tssr18415 2 74697739 to 74697751 12 + TSS region transcription start site region 18415
Hoxd9 2 74697763 to 74700208 2445 + protein coding gene homeobox D9
Del(2Hoxd4-Hoxd9)40Ddu 2 74697763 to 74729160 31397 chromosomal deletion deletion, Chr 2, Denis Duboule 40
Del(2Hoxd1-Hoxd9)63Ddu 2 74697763 to 74765142 67379 chromosomal deletion deletion, Chr 2, Denis Duboule 63
Del(2Hoxd8-Hoxd9)22Ddu 2 74697763 to 74707933 10170 chromosomal deletion deletion, Chr 2, Denis Duboule 22
Dp(2Hoxd8-Hoxd9)2Ddu 2 74697763 to 74707933 10170 chromosomal duplication duplication, Chr 2, Denis Duboule 2
Del(2Hoxd8-Hoxd9)18Ddu 2 74697763 to 74707933 10170 chromosomal deletion deletion, Chr 2, Denis Duboule 18
Tssr18416 2 74697946 to 74697951 5 + TSS region transcription start site region 18416
Tssr18417 2 74697969 to 74697982 13 + TSS region transcription start site region 18417
Tssr18418 2 74697993 to 74698008 15 + TSS region transcription start site region 18418
Tssr18419 2 74698014 to 74698026 12 + TSS region transcription start site region 18419
D2Tfv11 2 74699669 to 74699856 187 DNA segment DNA segment, Chr 2, Thomas F. Vogt 11
Gm44463 2 74701006 to 74701142 136 - miRNA gene predicted gene, 44463
Gm38462 2 74702998 to 74712058 9060 - protein coding gene predicted gene, 38462
Cpgi11800 2 74704006 to 74706238 2232 CpG island CpG island 11800
Tssr18420 2 74704532 to 74704545 13 + TSS region transcription start site region 18420
Hoxd8 2 74704615 to 74707933 3318 + protein coding gene homeobox D8
Tssr18421 2 74704623 to 74704648 25 + TSS region transcription start site region 18421
Tssr18422 2 74704825 to 74704837 12 + TSS region transcription start site region 18422
Tssr18423 2 74704861 to 74704914 53 + TSS region transcription start site region 18423
Tssr18424 2 74704917 to 74704929 12 + TSS region transcription start site region 18424
Tssr18425 2 74705046 to 74705078 32 + TSS region transcription start site region 18425
Tssr18426 2 74705086 to 74705101 15 + TSS region transcription start site region 18426
Tssr18427 2 74705145 to 74705156 11 + TSS region transcription start site region 18427
Tssr18428 2 74705178 to 74705189 11 + TSS region transcription start site region 18428
Tssr18429 2 74705340 to 74705378 38 + TSS region transcription start site region 18429
Tssr18430 2 74705738 to 74705769 31 + TSS region transcription start site region 18430
Tssr24623 2 74705815 to 74705833 18 - TSS region transcription start site region 24623
Tssr18431 2 74709713 to 74709714 1 + TSS region transcription start site region 18431
Hoxd3os1 2 74710044 to 74716130 6086 - antisense lncRNA gene homeobox D3, opposite strand 1
Cpgi11801 2 74711739 to 74712591 852 CpG island CpG island 11801
Tssr18432 2 74711858 to 74711873 15 + TSS region transcription start site region 18432
Tssr18433 2 74711888 to 74711908 20 + TSS region transcription start site region 18433
Tssr18434 2 74711911 to 74711939 28 + TSS region transcription start site region 18434
Tssr18435 2 74711958 to 74712000 42 + TSS region transcription start site region 18435
Hoxd3 2 74711993 to 74748271 36278 + protein coding gene homeobox D3
Tssr18436 2 74712121 to 74712157 36 + TSS region transcription start site region 18436
Tssr24624 2 74714263 to 74714296 33 - TSS region transcription start site region 24624
Cpgi11802 2 74714992 to 74715233 241 CpG island CpG island 11802
Cpgi11803 2 74715846 to 74716219 373 CpG island CpG island 11803
Tssr533 2 74715973 to 74715976 3 - TSS region transcription start site region 533
Tssr24625 2 74715989 to 74716000 11 - TSS region transcription start site region 24625
Tssr534 2 74716002 to 74716007 5 - TSS region transcription start site region 534
Tssr24626 2 74716020 to 74716027 7 - TSS region transcription start site region 24626
Tssr24627 2 74716124 to 74716135 11 - TSS region transcription start site region 24627
Tssr24628 2 74716137 to 74716157 20 - TSS region transcription start site region 24628
Tssr18437 2 74716988 to 74716995 7 + TSS region transcription start site region 18437
Hoxd4 2 74721978 to 74729160 7182 + protein coding gene homeobox D4
Del(2Hoxd1-Hoxd4)55Ddu 2 74721978 to 74765142 43164 chromosomal deletion deletion, Chr 2, Denis Duboule 55
Del(2Hoxd1-Hoxd4)56Ddu 2 74721978 to 74765142 43164 chromosomal deletion deletion, Chr 2, Denis Duboule 56
Tssr18438 2 74722052 to 74722074 22 + TSS region transcription start site region 18438
Cpgi11804 2 74723306 to 74723643 337 CpG island CpG island 11804
Cpgi11805 2 74725320 to 74725624 304 CpG island CpG island 11805
Mir10b 2 74726070 to 74726137 67 + miRNA gene microRNA 10b
Gm28230 2 74726728 to 74747918 21190 + protein coding gene predicted gene 28230
Tssr18439 2 74727190 to 74727201 11 + TSS region transcription start site region 18439
Cpgi11806 2 74727226 to 74727838 612 CpG island CpG island 11806
Tssr18440 2 74727249 to 74727270 21 + TSS region transcription start site region 18440
Tssr18441 2 74729829 to 74729833 4 + TSS region transcription start site region 18441
AI448005 2 74731335 to 74731751 416 unclassified gene expressed sequence AI448005
Cpgi11807 2 74732635 to 74733514 879 CpG island CpG island 11807
Cpgi11808 2 74735412 to 74735700 288 CpG island CpG island 11808
Cpgi11809 2 74736164 to 74736765 601 CpG island CpG island 11809
Tssr535 2 74736396 to 74736435 39 + TSS region transcription start site region 535
Cpgi11810 2 74740289 to 74740715 426 CpG island CpG island 11810
Tssr18442 2 74745676 to 74745681 5 + TSS region transcription start site region 18442
Tssr18443 2 74745684 to 74745693 9 + TSS region transcription start site region 18443
Tssr18444 2 74745719 to 74745758 39 + TSS region transcription start site region 18444
Cpgi11811 2 74745986 to 74747450 1464 CpG island CpG island 11811
Haglr 2 74748422 to 74762896 14474 - bidirectional promoter lncRNA gene Hoxd antisense growth associated long non-coding RNA
Cpgi11812 2 74749349 to 74750312 963 CpG island CpG island 11812
Cpgi11813 2 74752515 to 74753644 1129 CpG island CpG island 11813
Gm14424 2 74752684 to 74753744 1060 + lincRNA gene predicted gene 14424
Tssr18445 2 74752976 to 74752989 13 + TSS region transcription start site region 18445
Tssr24629 2 74753430 to 74753444 14 - TSS region transcription start site region 24629
Tssr24630 2 74753455 to 74753463 8 - TSS region transcription start site region 24630
Tssr24631 2 74753474 to 74753478 4 - TSS region transcription start site region 24631
Gm14426 2 74754455 to 74755097 642 + lincRNA gene predicted gene 14426
Cpgi11814 2 74762650 to 74763708 1058 CpG island CpG island 11814
Hoxd1 2 74762980 to 74765142 2162 + protein coding gene homeobox D1
D2Tfv14 2 74764670 to 74764895 225 DNA segment DNA segment, Chr 2, Thomas F. Vogt 14
Del(2Cd44-Hoxd11)43Ddu 2 102901665 to 74679558 -28222107 chromosomal deletion deletion, Chr 2, Denis Duboule 43
In(2Cd44;Hoxd11)2Ddu 2 102901665 to 74679558 -28222107 chromosomal inversion inversion, Chr 2, Denis Duboule 2
Parms1 2 114293051 to 74693773 -39599278 QTL patched associated RMS 1
Sluc31 2 129371085 to 74693773 -54677312 QTL susceptibility to lung cancer 31