Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:74348958-74688986

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
In(2Hoxd11;Itga6)1Ddu 2 71786886 to 74687016 2900130 chromosomal inversion inversion, Chr 2, Denis Duboule 1
In(2Itga6-Evx2)44Ddu 2 71786886 to 74659557 2872671 chromosomal inversion inversion, Chr 2, Denis Duboule 44
In(2Lnp-Itga6)47Ddu 2 71786886 to 74579435 2792549 chromosomal inversion inversion, Chr 2, Denis Duboule 47
Dp(2Evx2-Atf2)59Ddu 2 73816509 to 74659557 843048 chromosomal duplication duplication, Chr 2, Denis Duboule 59
Dp(2Lnp-Atf2)60Ddu 2 73816509 to 74579435 762926 chromosomal duplication duplication, Chr 2, Denis Duboule 60
Del(2Evx2-Atf2)53Ddu 2 73816509 to 74659557 843048 chromosomal deletion deletion, Chr 2, Denis Duboule 53
D2Tfv6 2 74381391 to 74381510 119 DNA segment DNA segment, Chr 2, Thomas F. Vogt 6
Tssr24605 2 74518958 to 74518986 28 - TSS region transcription start site region 24605
Lnpk 2 74520291 to 74579435 59144 - protein coding gene lunapark, ER junction formation factor
Tssr24606 2 74521974 to 74521985 11 - TSS region transcription start site region 24606
Tssr24607 2 74544534 to 74544555 21 - TSS region transcription start site region 24607
Tssr24608 2 74562797 to 74562803 6 - TSS region transcription start site region 24608
Tssr24609 2 74576594 to 74576607 13 - TSS region transcription start site region 24609
Cpgi11782 2 74578118 to 74579289 1171 CpG island CpG island 11782
Tssr24610 2 74578875 to 74578954 79 - TSS region transcription start site region 24610
Tssr18388 2 74579039 to 74579048 9 + TSS region transcription start site region 18388
4930445N08Rik 2 74579076 to 74584544 5468 + antisense lncRNA gene RIKEN cDNA 4930445N08 gene
Tssr24611 2 74579407 to 74579417 10 - TSS region transcription start site region 24611
Tssr24612 2 74579420 to 74579450 30 - TSS region transcription start site region 24612
Tssr24613 2 74579461 to 74579464 3 - TSS region transcription start site region 24613
Mrpl23-ps1 2 74591372 to 74591915 543 - pseudogene mitichondrial ribosomal protein L23, pseudogene 1
Tssr24614 2 74591891 to 74591908 17 - TSS region transcription start site region 24614
Gm39852 2 74598145 to 74606232 8087 - lncRNA gene predicted gene, 39852
Tssr24615 2 74602130 to 74602152 22 - TSS region transcription start site region 24615
Tssr24616 2 74606162 to 74606171 9 - TSS region transcription start site region 24616
Gm22975 2 74624642 to 74624748 106 + snRNA gene predicted gene, 22975
Gm13672 2 74631840 to 74632298 458 + pseudogene predicted gene 13672
Evx2 2 74652991 to 74659557 6566 - protein coding gene even-skipped homeobox 2
Cpgi11783 2 74654936 to 74656714 1778 CpG island CpG island 11783
Cpgi11784 2 74657418 to 74658188 770 CpG island CpG island 11784
D2Tfv7 2 74657541 to 74657770 229 DNA segment DNA segment, Chr 2, Thomas F. Vogt 7
Cpgi11785 2 74658543 to 74659769 1226 CpG island CpG island 11785
Tssr24617 2 74659789 to 74659802 13 - TSS region transcription start site region 24617
Tssr24618 2 74659835 to 74659846 11 - TSS region transcription start site region 24618
Tssr24619 2 74659852 to 74659865 13 - TSS region transcription start site region 24619
Cpgi11786 2 74660916 to 74661239 323 CpG island CpG island 11786
Tssr24620 2 74661194 to 74661201 7 - TSS region transcription start site region 24620
Tssr24621 2 74661243 to 74661252 9 - TSS region transcription start site region 24621
Gm31790 2 74661551 to 74666891 5340 + lncRNA gene predicted gene, 31790
Cpgi11787 2 74661774 to 74662033 259 CpG island CpG island 11787
Cpgi11788 2 74667222 to 74667453 231 CpG island CpG island 11788
Tssr18389 2 74667267 to 74667273 6 + TSS region transcription start site region 18389
Cpgi11789 2 74667627 to 74669086 1459 CpG island CpG island 11789
Tssr18390 2 74668207 to 74668229 22 + TSS region transcription start site region 18390
Dp(2Hoxd11-Hoxd13)4Ddu 2 74668310 to 74687016 18706 chromosomal duplication duplication, Chr 2, Denis Duboule 4
Del(2Hoxd1-Hoxd13)1Ddu 2 74668310 to 74765142 96832 complex/cluster/region deletion, Chr 2, Denis Duboule 1
Del(2Hoxd4-Hoxd13)30Ddu 2 74668310 to 74729160 60850 chromosomal deletion deletion, Chr 2, Denis Duboule 30
Del(2Hoxd4-Hoxd13)28Ddu 2 74668310 to 74729160 60850 chromosomal deletion deletion, Chr 2, Denis Duboule 28
Del(2Hoxd9-Hoxd13)8Ddu 2 74668310 to 74700208 31898 chromosomal deletion deletion, Chr 2, Denis Duboule 8
Del(2Hoxd8-Hoxd13)9Ddu 2 74668310 to 74707933 39623 chromosomal deletion deletion, Chr 2, Denis Duboule 9
Del(2Hoxd8-Hoxd13)11Ddu 2 74668310 to 74707933 39623 chromosomal deletion deletion, Chr 2, Denis Duboule 11
Del(2Hoxd1-Hoxd13)12Ddu 2 74668310 to 74765142 96832 chromosomal deletion deletion, Chr 2, Denis Duboule 12
Del(2Hoxd1-Hoxd13)54Ddu 2 74668310 to 74765142 96832 chromosomal deletion deletion, Chr 2, Denis Duboule 54
Del(2Hoxd10-Hoxd13)10Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 10
Del(2Hoxd10-Hoxd13)38Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 38
Del(2Hoxd10-Hoxd13)7Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 7
Del(2Hoxd11-Hoxd13)16Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 16
Del(2Hoxd11-Hoxd13)27Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 27
Del(2Hoxd11-Hoxd13)29Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 29
Del(2Hoxd11-Hoxd13)2Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 1
Del(2Hoxd12-Hoxd13)35Ddu 2 74668310 to 74677705 9395 chromosomal deletion deletion, Chr 2, Denis Duboule 35
Del(2Hoxd12-Hoxd13)41Ddu 2 74668310 to 74677705 9395 chromosomal deletion deletion, Chr 2, Denis Duboule 41
Del(2Hoxd12-Hoxd13)5Ddu 2 74668310 to 74677705 9395 chromosomal deletion deletion, Chr 2, Denis Duboule 5
Del(2Hoxd12-Hoxd13)6Ddu 2 74668310 to 74677705 9395 chromosomal deletion deletion, Chr 2, Denis Duboule 6
Hoxd13 2 74668310 to 74671599 3289 + protein coding gene homeobox D13
Cpgi11790 2 74672711 to 74673330 619 CpG island CpG island 11790
Cpgi11791 2 74673819 to 74674211 392 CpG island CpG island 11791
Tssr532 2 74673902 to 74673926 24 + TSS region transcription start site region 532
Tssr18391 2 74673952 to 74673955 3 + TSS region transcription start site region 18391
Tssr18392 2 74675007 to 74675032 25 + TSS region transcription start site region 18392
Dp(2Hoxd11-Hoxd12)5Ddu 2 74675013 to 74687016 12003 chromosomal duplication duplication, Chr 2, Denis Duboule 5
Del(2Hoxd9-Hoxd12)20Ddu 2 74675013 to 74700208 25195 chromosomal deletion deletion, Chr 2, Denis Duboule 20
Del(2Hoxd10-Hoxd12)19Ddu 2 74675013 to 74695105 20092 chromosomal deletion deletion, Chr 2, Denis Duboule 19
Del(2Hoxd11-Hoxd12)34Ddu 2 74675013 to 74687016 12003 chromosomal deletion deletion, Chr 2, Denis Duboule 34
Hoxd12 2 74675013 to 74677705 2692 + protein coding gene homeobox D12
Tssr18393 2 74675068 to 74675086 18 + TSS region transcription start site region 18393
Cpgi11792 2 74675076 to 74676044 968 CpG island CpG island 11792
Tssr18394 2 74675092 to 74675102 10 + TSS region transcription start site region 18394
Tssr18395 2 74679552 to 74679564 12 + TSS region transcription start site region 18395
Hoxd11 2 74679558 to 74687016 7458 + protein coding gene homeobox D11
Del(2Hoxd10-Hoxd11)32Ddu 2 74679558 to 74695105 15547 chromosomal deletion deletion, Chr 2, Denis Duboule 32
Del(2Hoxd4-Hoxd11)36Ddu 2 74679558 to 74729160 49602 chromosomal deletion deletion, Chr 2, Denis Duboule 36
Cpgi11793 2 74679561 to 74680747 1186 CpG island CpG island 11793
Tssr18396 2 74679668 to 74679681 13 + TSS region transcription start site region 18396
Tssr18397 2 74679685 to 74679701 16 + TSS region transcription start site region 18397
Tssr18398 2 74680630 to 74680661 31 + TSS region transcription start site region 18398
Cpgi11794 2 74681563 to 74683961 2398 CpG island CpG island 11794
Tssr18399 2 74681991 to 74682007 16 + TSS region transcription start site region 18399
Tssr18400 2 74682018 to 74682030 12 + TSS region transcription start site region 18400
Tssr18401 2 74682286 to 74682326 40 + TSS region transcription start site region 18401
Gm28309 2 74683446 to 74694194 10748 + unclassified non-coding RNA gene predicted gene 28309
Tssr18402 2 74683459 to 74683468 9 + TSS region transcription start site region 18402
Tssr18403 2 74683833 to 74683844 11 + TSS region transcription start site region 18403
Tssr18404 2 74683893 to 74683901 8 + TSS region transcription start site region 18404
D2Mit271 2 74684815 to 74684955 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 271
D2Tfv9 2 74684828 to 74684972 144 DNA segment DNA segment, Chr 2, Thomas F. Vogt 9
Tssr18405 2 74686553 to 74686557 4 + TSS region transcription start site region 18405
Cpgi11795 2 74687456 to 74688047 591 CpG island CpG island 11795
Del(2Cd44-Hoxd11)43Ddu 2 102901665 to 74679558 -28222107 chromosomal deletion deletion, Chr 2, Denis Duboule 43
In(2Cd44;Hoxd11)2Ddu 2 102901665 to 74679558 -28222107 chromosomal inversion inversion, Chr 2, Denis Duboule 2