Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:69204980-70295002

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spc25 2 69193895 to 69206194 12299 - protein coding gene SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
Cpgi11708 2 69205652 to 69206368 716 CpG island CpG island 11708
Tssr24421 2 69206133 to 69206144 11 - TSS region transcription start site region 24421
Tssr24422 2 69206146 to 69206191 45 - TSS region transcription start site region 24422
Tssr24423 2 69206198 to 69206207 9 - TSS region transcription start site region 24423
G6pc2 2 69211073 to 69227841 16768 + protein coding gene glucose-6-phosphatase, catalytic, 2
Tssr18108 2 69219989 to 69220005 16 + TSS region transcription start site region 18108
Tssr24424 2 69237451 to 69237464 13 - TSS region transcription start site region 24424
Abcb11 2 69238282 to 69342616 104334 - protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 11
Gm13613 2 69248307 to 69272491 24184 + antisense lncRNA gene predicted gene 13613
Gm13614 2 69329739 to 69330241 502 + pseudogene predicted gene 13614
Tssr24425 2 69342558 to 69342570 12 - TSS region transcription start site region 24425
Tssr24426 2 69342578 to 69342592 14 - TSS region transcription start site region 24426
Tssr24427 2 69342604 to 69342624 20 - TSS region transcription start site region 24427
Tssr18109 2 69355614 to 69355628 14 + TSS region transcription start site region 18109
Gm36393 2 69378851 to 69405782 26931 - lncRNA gene predicted gene, 36393
Tssr24428 2 69380306 to 69380317 11 - TSS region transcription start site region 24428
Tssr18110 2 69380431 to 69380458 27 + TSS region transcription start site region 18110
Dhrs9 2 69380462 to 69403086 22624 + protein coding gene dehydrogenase/reductase (SDR family) member 9
Tssr18111 2 69380468 to 69380478 10 + TSS region transcription start site region 18111
Tssr18112 2 69380481 to 69380503 22 + TSS region transcription start site region 18112
Cpgi11709 2 69380506 to 69380681 175 CpG island CpG island 11709
Tssr18113 2 69380533 to 69380542 9 + TSS region transcription start site region 18113
Tssr513 2 69381909 to 69381922 13 - TSS region transcription start site region 513
Tssr18114 2 69382028 to 69382035 7 + TSS region transcription start site region 18114
Tssr18115 2 69382050 to 69382057 7 + TSS region transcription start site region 18115
Tssr18116 2 69382101 to 69382108 7 + TSS region transcription start site region 18116
Tssr24429 2 69382985 to 69383004 19 - TSS region transcription start site region 24429
Tssr24430 2 69383034 to 69383046 12 - TSS region transcription start site region 24430
Mdq4 2 69387396 to 69387396 0 QTL mammary ductal QTL 4
Tssr18117 2 69392986 to 69392995 9 + TSS region transcription start site region 18117
Tssr18118 2 69393056 to 69393090 34 + TSS region transcription start site region 18118
Tssr18119 2 69393102 to 69393175 73 + TSS region transcription start site region 18119
Tssr18120 2 69394152 to 69394193 41 + TSS region transcription start site region 18120
Tssr18121 2 69394209 to 69394257 48 + TSS region transcription start site region 18121
Tssr18122 2 69394486 to 69394502 16 + TSS region transcription start site region 18122
Tssr18123 2 69403966 to 69404014 48 + TSS region transcription start site region 18123
Tssr24431 2 69405819 to 69405846 27 - TSS region transcription start site region 24431
Tssr24432 2 69405851 to 69405862 11 - TSS region transcription start site region 24432
Tssr18124 2 69412788 to 69412804 16 + TSS region transcription start site region 18124
Tssr24433 2 69414508 to 69414519 11 - TSS region transcription start site region 24433
Tssr24434 2 69414633 to 69414637 4 - TSS region transcription start site region 24434
Lrp2 2 69424340 to 69586065 161725 - protein coding gene low density lipoprotein receptor-related protein 2
Tssr24435 2 69453224 to 69453230 6 - TSS region transcription start site region 24435
D2Mit327 2 69465036 to 69465161 125 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 327
Tssr24436 2 69491520 to 69491532 12 - TSS region transcription start site region 24436
Tssr24437 2 69522639 to 69522647 8 - TSS region transcription start site region 24437
Tssr24438 2 69533596 to 69533604 8 - TSS region transcription start site region 24438
Tssr24439 2 69533637 to 69533648 11 - TSS region transcription start site region 24439
Tssr24440 2 69550906 to 69550924 18 - TSS region transcription start site region 24440
Tssr24441 2 69564919 to 69564922 3 - TSS region transcription start site region 24441
D2Mit524 2 69570569 to 69570665 96 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 524
Cpgi11710 2 69585203 to 69586506 1303 CpG island CpG island 11710
Tssr24442 2 69586021 to 69586037 16 - TSS region transcription start site region 24442
Cpgi11711 2 69587970 to 69588220 250 CpG island CpG island 11711
D2Mit380 2 69617675 to 69617792 117 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 380
Hctq6 2 69617675 to 69617792 117 QTL hematocrit QTL 6
Hbbcq3 2 69617675 to 69617792 117 QTL hemoglobin concentration QTL 3
Cpgi11712 2 69629233 to 69629507 274 CpG island CpG island 11712
Tssr18125 2 69646837 to 69646849 12 + TSS region transcription start site region 18125
Tssr18126 2 69646866 to 69646875 9 + TSS region transcription start site region 18126
Cpgi11713 2 69647030 to 69647619 589 CpG island CpG island 11713
Bbs5 2 69647171 to 69667571 20400 + protein coding gene Bardet-Biedl syndrome 5 (human)
Tssr18127 2 69647211 to 69647272 61 + TSS region transcription start site region 18127
Tssr18128 2 69669845 to 69669857 12 + TSS region transcription start site region 18128
Tssr18129 2 69669898 to 69669913 15 + TSS region transcription start site region 18129
Tssr18130 2 69670100 to 69670134 34 + TSS region transcription start site region 18130
Klhl41 2 69670120 to 69684230 14110 + protein coding gene kelch-like 41
Tssr18131 2 69670160 to 69670167 7 + TSS region transcription start site region 18131
Fastkd1 2 69686820 to 69712606 25786 - protein coding gene FAST kinase domains 1
Cpgi11714 2 69713051 to 69713703 652 CpG island CpG island 11714
Tssr24443 2 69713461 to 69713477 16 - TSS region transcription start site region 24443
Tssr24444 2 69713487 to 69713526 39 - TSS region transcription start site region 24444
Cpgi11715 2 69722593 to 69723744 1151 CpG island CpG island 11715
Tssr24445 2 69722747 to 69722783 36 - TSS region transcription start site region 24445
Tssr18132 2 69722797 to 69722840 43 + TSS region transcription start site region 18132
Ppig 2 69722819 to 69754059 31240 + protein coding gene peptidyl-prolyl isomerase G (cyclophilin G)
Tssr18133 2 69722860 to 69722876 16 + TSS region transcription start site region 18133
Tssr18134 2 69723039 to 69723068 29 + TSS region transcription start site region 18134
Tssr18135 2 69723071 to 69723093 22 + TSS region transcription start site region 18135
Tssr18136 2 69723248 to 69723278 30 + TSS region transcription start site region 18136
Gm13622 2 69737357 to 69737789 432 - pseudogene predicted gene 13622
Tssr24446 2 69737826 to 69737830 4 - TSS region transcription start site region 24446
Tssr18137 2 69741503 to 69741523 20 + TSS region transcription start site region 18137
Tssr18138 2 69746019 to 69746039 20 + TSS region transcription start site region 18138
Tssr18139 2 69748950 to 69748970 20 + TSS region transcription start site region 18139
Tssr18140 2 69748988 to 69748999 11 + TSS region transcription start site region 18140
Tssr18141 2 69749003 to 69749018 15 + TSS region transcription start site region 18141
Tssr18142 2 69749026 to 69749037 11 + TSS region transcription start site region 18142
Tssr18143 2 69749058 to 69749077 19 + TSS region transcription start site region 18143
Tssr18144 2 69749262 to 69749273 11 + TSS region transcription start site region 18144
Tssr18145 2 69749378 to 69749404 26 + TSS region transcription start site region 18145
Tssr18146 2 69749479 to 69749494 15 + TSS region transcription start site region 18146
Tssr18147 2 69749528 to 69749550 22 + TSS region transcription start site region 18147
Tssr18148 2 69749567 to 69749586 19 + TSS region transcription start site region 18148
Tssr18149 2 69749591 to 69749605 14 + TSS region transcription start site region 18149
Tssr18150 2 69749637 to 69749650 13 + TSS region transcription start site region 18150
Tssr18151 2 69749652 to 69749673 21 + TSS region transcription start site region 18151
Tssr18152 2 69749728 to 69749742 14 + TSS region transcription start site region 18152
Tssr18153 2 69749813 to 69749824 11 + TSS region transcription start site region 18153
Tssr18154 2 69749917 to 69749930 13 + TSS region transcription start site region 18154
Tssr18155 2 69749938 to 69749951 13 + TSS region transcription start site region 18155
Tssr18156 2 69749980 to 69750002 22 + TSS region transcription start site region 18156
Tssr18157 2 69750513 to 69750527 14 + TSS region transcription start site region 18157
Ccdc173 2 69758033 to 69789575 31542 - protein coding gene coiled-coil domain containing 173
Tssr514 2 69766140 to 69766145 5 + TSS region transcription start site region 514
Cpgi11716 2 69766173 to 69766373 200 CpG island CpG island 11716
Gm13623 2 69766182 to 69766806 624 + pseudogene predicted gene 13623
Tssr24447 2 69781990 to 69782003 13 - TSS region transcription start site region 24447
Cpgi11717 2 69789364 to 69790019 655 CpG island CpG island 11717
Tssr24448 2 69789520 to 69789563 43 - TSS region transcription start site region 24448
Tssr24449 2 69789568 to 69789583 15 - TSS region transcription start site region 24449
Tssr18158 2 69789621 to 69789626 5 + TSS region transcription start site region 18158
Phospho2 2 69789628 to 69797223 7595 + protein coding gene phosphatase, orphan 2
Tssr515 2 69789641 to 69789644 3 + TSS region transcription start site region 515
Tssr18159 2 69789647 to 69789749 102 + TSS region transcription start site region 18159
Tssr18160 2 69790968 to 69790973 5 + TSS region transcription start site region 18160
Gm13624 2 69799151 to 69799612 461 - pseudogene predicted gene 13624
Tssr24450 2 69799687 to 69799688 1 - TSS region transcription start site region 24450
Gm39841 2 69801831 to 69805002 3171 + lncRNA gene predicted gene, 39841
Tssr18161 2 69821676 to 69821696 20 + TSS region transcription start site region 18161
Tssr18162 2 69821810 to 69821857 47 + TSS region transcription start site region 18162
Tssr18163 2 69821914 to 69821934 20 + TSS region transcription start site region 18163
Tssr18164 2 69821940 to 69821991 51 + TSS region transcription start site region 18164
Klhl23 2 69821944 to 69836651 14707 + protein coding gene kelch-like 23
Tssr18165 2 69821996 to 69822007 11 + TSS region transcription start site region 18165
Tssr18166 2 69822025 to 69822034 9 + TSS region transcription start site region 18166
Cpgi11718 2 69822389 to 69823550 1161 CpG island CpG island 11718
Tssr18167 2 69822441 to 69822511 70 + TSS region transcription start site region 18167
Tssr18168 2 69822530 to 69822545 15 + TSS region transcription start site region 18168
Tssr18169 2 69822714 to 69822776 62 + TSS region transcription start site region 18169
Tssr18170 2 69822797 to 69822870 73 + TSS region transcription start site region 18170
Tssr18171 2 69822950 to 69822969 19 + TSS region transcription start site region 18171
Tssr18172 2 69822975 to 69822998 23 + TSS region transcription start site region 18172
Cpgi11719 2 69861227 to 69862145 918 CpG island CpG island 11719
Ssb 2 69861562 to 69871846 10284 + protein coding gene Sjogren syndrome antigen B
Tssr18173 2 69861577 to 69861584 7 + TSS region transcription start site region 18173
Tssr18174 2 69861585 to 69861635 50 + TSS region transcription start site region 18174
Tssr18175 2 69861638 to 69861653 15 + TSS region transcription start site region 18175
Tssr18176 2 69862175 to 69862178 3 + TSS region transcription start site region 18176
Tssr18177 2 69867448 to 69867462 14 + TSS region transcription start site region 18177
Tssr18178 2 69867490 to 69867528 38 + TSS region transcription start site region 18178
Tssr18179 2 69869916 to 69869932 16 + TSS region transcription start site region 18179
Tssr18180 2 69870379 to 69870393 14 + TSS region transcription start site region 18180
Tssr18181 2 69870404 to 69870424 20 + TSS region transcription start site region 18181
Tssr18182 2 69870671 to 69870712 41 + TSS region transcription start site region 18182
Mettl5 2 69871198 to 69885615 14417 - protein coding gene methyltransferase like 5
Gm13625 2 69871412 to 69872202 790 - unclassified non-coding RNA gene predicted gene 13625
Cpgi11720 2 69885233 to 69885989 756 CpG island CpG island 11720
Tssr24451 2 69885557 to 69885630 73 - TSS region transcription start site region 24451
Mettl5os 2 69885728 to 69888155 2427 + antisense lncRNA gene methyltransferase like 5, opposite strand
Cpgi11721 2 69897011 to 69898219 1208 CpG island CpG island 11721
Tssr18183 2 69897194 to 69897206 12 + TSS region transcription start site region 18183
Tssr18184 2 69897220 to 69897247 27 + TSS region transcription start site region 18184
Ubr3 2 69897246 to 70024013 126767 + protein coding gene ubiquitin protein ligase E3 component n-recognin 3
Tssr18185 2 69897255 to 69897294 39 + TSS region transcription start site region 18185
D2Mit349 2 69899905 to 69900035 130 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 349
D2Mit473 2 69899920 to 69900035 115 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 473
Tssr18186 2 69930528 to 69930536 8 + TSS region transcription start site region 18186
Gm13631 2 70038911 to 70042406 3495 + unclassified non-coding RNA gene predicted gene 13631
Tssr18187 2 70039114 to 70039125 11 + TSS region transcription start site region 18187
Myo3b 2 70039126 to 70429195 390069 + protein coding gene myosin IIIB
Tssr18188 2 70039267 to 70039306 39 + TSS region transcription start site region 18188
Tssr18189 2 70070033 to 70070076 43 + TSS region transcription start site region 18189
Tssr24452 2 70089714 to 70089736 22 - TSS region transcription start site region 24452
Tssr18190 2 70091926 to 70091931 5 + TSS region transcription start site region 18190
Tssr18191 2 70094971 to 70094984 13 + TSS region transcription start site region 18191
Tssr516 2 70135351 to 70135374 23 + TSS region transcription start site region 516
Tssr18192 2 70142970 to 70142975 5 + TSS region transcription start site region 18192
Tssr18193 2 70215815 to 70215822 7 + TSS region transcription start site region 18193