Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:66056576-66456645

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Galnt3 2 66082766 to 66124994 42228 - protein coding gene polypeptide N-acetylgalactosaminyltransferase 3
Tssr24370 2 66102577 to 66102590 13 - TSS region transcription start site region 24370
Cpgi11702 2 66123913 to 66125347 1434 CpG island CpG island 11702
Tssr24371 2 66124714 to 66124764 50 - TSS region transcription start site region 24371
Tssr24372 2 66124767 to 66124804 37 - TSS region transcription start site region 24372
Tssr24373 2 66124845 to 66124852 7 - TSS region transcription start site region 24373
Tssr24374 2 66125130 to 66125143 13 - TSS region transcription start site region 24374
Gm28638 2 66125317 to 66175250 49933 + lincRNA gene predicted gene 28638
Gm13616 2 66145654 to 66145875 221 - pseudogene predicted gene 13616
Tssr24375 2 66165380 to 66165386 6 - TSS region transcription start site region 24375
Ttc21b 2 66184327 to 66256617 72290 - protein coding gene tetratricopeptide repeat domain 21B
Gm13618 2 66187836 to 66192813 4977 + antisense lncRNA gene predicted gene 13618
Tssr24376 2 66210180 to 66210184 4 - TSS region transcription start site region 24376
Cpgi11703 2 66256234 to 66256874 640 CpG island CpG island 11703
Tssr24377 2 66256576 to 66256645 69 - TSS region transcription start site region 24377
Scn1a 2 66270782 to 66440837 170055 - protein coding gene sodium channel, voltage-gated, type I, alpha
Tssr24378 2 66271219 to 66271222 3 - TSS region transcription start site region 24378
A230059G12Rik 2 66371836 to 66376010 4174 unclassified non-coding RNA gene RIKEN cDNA A230059G12 gene
Tssr24379 2 66409931 to 66409948 17 - TSS region transcription start site region 24379
Tssr24380 2 66410083 to 66410134 51 - TSS region transcription start site region 24380
Gm13630 2 66412673 to 66421589 8916 + lncRNA gene predicted gene 13630
Tssr24381 2 66440753 to 66440846 93 - TSS region transcription start site region 24381
Tssr18000 2 66440856 to 66440905 49 + TSS region transcription start site region 18000
Gm13629 2 66440880 to 66546026 105146 + antisense lncRNA gene predicted gene 13629
Tssr24382 2 66440895 to 66440905 10 - TSS region transcription start site region 24382
Tssr18001 2 66440913 to 66440929 16 + TSS region transcription start site region 18001
Tssr24383 2 66441149 to 66441162 13 - TSS region transcription start site region 24383
Rpl35-ps1 2 66447036 to 66447407 371 - pseudogene ribosomal protein L35, pseudogene 1