Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:31551526-34382550

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623 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia25 2 24789103 to 33633160 8844057 QTL collagen induced arthritis QTL 25
Cia24 2 24789103 to 33633160 8844057 QTL collagen induced arthritis QTL 24
Gm32952 2 31527876 to 31552067 24191 - lncRNA gene predicted gene, 32952
Gm13426 2 31551901 to 31552695 794 - pseudogene predicted gene 13426
Cpgi11474 2 31572277 to 31573249 972 CpG island CpG island 11474
Tssr17203 2 31572647 to 31572658 11 + TSS region transcription start site region 17203
Fubp3 2 31572651 to 31617526 44875 + protein coding gene far upstream element (FUSE) binding protein 3
Tssr17204 2 31572667 to 31572678 11 + TSS region transcription start site region 17204
Tssr17205 2 31572701 to 31572724 23 + TSS region transcription start site region 17205
Tssr17206 2 31572775 to 31572841 66 + TSS region transcription start site region 17206
Mir6998 2 31612421 to 31612484 63 + miRNA gene microRNA 6998
Tssr17207 2 31615514 to 31615538 24 + TSS region transcription start site region 17207
Tssr17208 2 31616595 to 31616599 4 + TSS region transcription start site region 17208
Gm13425 2 31633453 to 31640589 7136 - antisense lncRNA gene predicted gene 13425
Cpgi11475 2 31635127 to 31637355 2228 CpG island CpG island 11475
Tssr23443 2 31635906 to 31635907 1 - TSS region transcription start site region 23443
Cpgi11476 2 31637559 to 31638479 920 CpG island CpG island 11476
Cpgi11477 2 31638929 to 31640869 1940 CpG island CpG island 11477
Tssr17209 2 31639717 to 31639723 6 + TSS region transcription start site region 17209
Prdm12 2 31640037 to 31655795 15758 + protein coding gene PR domain containing 12
Cpgi11478 2 31641159 to 31641366 207 CpG island CpG island 11478
D2Mit268 2 31641472 to 31641621 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 268
Cpgi11479 2 31641816 to 31642342 526 CpG island CpG island 11479
Cpgi11480 2 31653663 to 31655031 1368 CpG island CpG island 11480
Cpgi11481 2 31655278 to 31655547 269 CpG island CpG island 11481
Gm13424 2 31660470 to 31661427 957 + pseudogene predicted gene 13424
Cpgi11482 2 31670598 to 31671080 482 CpG island CpG island 11482
Tssr17210 2 31670714 to 31670741 27 + TSS region transcription start site region 17210
Exosc2 2 31670737 to 31681349 10612 + protein coding gene exosome component 2
Tssr17211 2 31680276 to 31680280 4 + TSS region transcription start site region 17211
Gm13427 2 31681451 to 31688433 6982 - antisense lncRNA gene predicted gene 13427
Cpgi11483 2 31688016 to 31689140 1124 CpG island CpG island 11483
Tssr17212 2 31688330 to 31688386 56 + TSS region transcription start site region 17212
Abl1 2 31688376 to 31804227 115851 + protein coding gene c-abl oncogene 1, non-receptor tyrosine kinase
Tssr17213 2 31688401 to 31688415 14 + TSS region transcription start site region 17213
Tssr17214 2 31688525 to 31688560 35 + TSS region transcription start site region 17214
Cpgi11484 2 31759660 to 31760148 488 CpG island CpG island 11484
Tssr17215 2 31759901 to 31759921 20 + TSS region transcription start site region 17215
Tssr17216 2 31759932 to 31759989 57 + TSS region transcription start site region 17216
Tssr17217 2 31759993 to 31760023 30 + TSS region transcription start site region 17217
Qrfp 2 31806168 to 31810580 4412 - protein coding gene pyroglutamylated RFamide peptide
Fibcd1 2 31813290 to 31846005 32715 - protein coding gene fibrinogen C domain containing 1
Cpgi11485 2 31822757 to 31823021 264 CpG island CpG island 11485
Cpgi11486 2 31825587 to 31825800 213 CpG island CpG island 11486
Cpgi11487 2 31845388 to 31847137 1749 CpG island CpG island 11487
Tssr23444 2 31845925 to 31845952 27 - TSS region transcription start site region 23444
Cpgi11488 2 31880744 to 31880971 227 CpG island CpG island 11488
Gm13441 2 31886934 to 31892417 5483 - antisense lncRNA gene predicted gene 13441
Cpgi11489 2 31886981 to 31887883 902 CpG island CpG island 11489
Tssr17218 2 31887262 to 31887310 48 + TSS region transcription start site region 17218
Lamc3 2 31887291 to 31946539 59248 + protein coding gene laminin gamma 3
Cpgi11490 2 31949850 to 31950925 1075 CpG island CpG island 11490
Tssr17219 2 31950257 to 31950281 24 + TSS region transcription start site region 17219
Tssr17220 2 31950290 to 31950301 11 + TSS region transcription start site region 17220
Aif1l 2 31950303 to 31973442 23139 + protein coding gene allograft inflammatory factor 1-like
Tssr17221 2 31950307 to 31950315 8 + TSS region transcription start site region 17221
Tssr17222 2 31950328 to 31950338 10 + TSS region transcription start site region 17222
Gm13442 2 31961690 to 31962547 857 - antisense lncRNA gene predicted gene 13442
Tssr17223 2 31962014 to 31962024 10 + TSS region transcription start site region 17223
Tssr17224 2 31962062 to 31962072 10 + TSS region transcription start site region 17224
Tssr17225 2 31962180 to 31962197 17 + TSS region transcription start site region 17225
Tssr17226 2 31962201 to 31962242 41 + TSS region transcription start site region 17226
Tssr459 2 31965682 to 31965685 3 + TSS region transcription start site region 459
Cpgi11491 2 31974065 to 31975092 1027 CpG island CpG island 11491
Tssr17227 2 31974427 to 31974448 21 + TSS region transcription start site region 17227
Nup214 2 31974436 to 32053975 79539 + protein coding gene nucleoporin 214
Tssr17228 2 31974450 to 31974498 48 + TSS region transcription start site region 17228
Gm13608 2 31985059 to 31986458 1399 + pseudogene predicted gene 13608
Tssr17229 2 31991355 to 31991367 12 + TSS region transcription start site region 17229
Tssr17230 2 32004326 to 32004374 48 + TSS region transcription start site region 17230
Tssr17231 2 32006428 to 32006461 33 + TSS region transcription start site region 17231
Gm13609 2 32016644 to 32017344 700 - antisense lncRNA gene predicted gene 13609
Tssr23445 2 32017333 to 32017362 29 - TSS region transcription start site region 23445
Tssr17232 2 32017487 to 32017503 16 + TSS region transcription start site region 17232
Tssr17233 2 32017511 to 32017530 19 + TSS region transcription start site region 17233
Tssr17234 2 32034409 to 32034419 10 + TSS region transcription start site region 17234
Tssr17235 2 32034432 to 32034454 22 + TSS region transcription start site region 17235
Tssr23446 2 32045586 to 32045616 30 - TSS region transcription start site region 23446
Tssr17236 2 32045724 to 32045749 25 + TSS region transcription start site region 17236
Tssr17237 2 32047374 to 32047401 27 + TSS region transcription start site region 17237
Fam78a 2 32050055 to 32084857 34802 - protein coding gene family with sequence similarity 78, member A
Gm16534 2 32050086 to 32064911 14825 - unclassified non-coding RNA gene predicted gene 16534
Mir7674 2 32050946 to 32051008 62 + miRNA gene microRNA 7674
Tssr17238 2 32052050 to 32052064 14 + TSS region transcription start site region 17238
Tssr17239 2 32057606 to 32057617 11 + TSS region transcription start site region 17239
Tssr23447 2 32058660 to 32058664 4 - TSS region transcription start site region 23447
Tssr23448 2 32063245 to 32063259 14 - TSS region transcription start site region 23448
Tssr17240 2 32063330 to 32063345 15 + TSS region transcription start site region 17240
Tssr23449 2 32065064 to 32065083 19 - TSS region transcription start site region 23449
Tssr23450 2 32065089 to 32065119 30 - TSS region transcription start site region 23450
Tssr23451 2 32065356 to 32065363 7 - TSS region transcription start site region 23451
Tssr23452 2 32065413 to 32065437 24 - TSS region transcription start site region 23452
Tssr23453 2 32065438 to 32065457 19 - TSS region transcription start site region 23453
Tssr23454 2 32079339 to 32079350 11 - TSS region transcription start site region 23454
Tssr17241 2 32081552 to 32081562 10 + TSS region transcription start site region 17241
Tssr17242 2 32081583 to 32081621 38 + TSS region transcription start site region 17242
1700020L05Rik 2 32082361 to 32082637 276 unclassified gene RIKEN cDNA 1700020L05 gene
Cpgi11492 2 32082598 to 32082834 236 CpG island CpG island 11492
Cpgi11493 2 32083133 to 32085008 1875 CpG island CpG island 11493
Tssr23455 2 32083220 to 32083271 51 - TSS region transcription start site region 23455
Tssr17243 2 32083279 to 32083290 11 + TSS region transcription start site region 17243
Tssr23456 2 32083304 to 32083330 26 - TSS region transcription start site region 23456
Tssr23457 2 32083621 to 32083634 13 - TSS region transcription start site region 23457
Tssr23458 2 32083650 to 32083751 101 - TSS region transcription start site region 23458
Tssr23459 2 32083783 to 32083796 13 - TSS region transcription start site region 23459
Tssr17244 2 32083867 to 32083897 30 + TSS region transcription start site region 17244
Tssr23460 2 32084650 to 32084731 81 - TSS region transcription start site region 23460
Gm33126 2 32085296 to 32087409 2113 + lncRNA gene predicted gene, 33126
Tssr23461 2 32085320 to 32085329 9 - TSS region transcription start site region 23461
Tssr17245 2 32085492 to 32085502 10 + TSS region transcription start site region 17245
Tssr23462 2 32087420 to 32087423 3 - TSS region transcription start site region 23462
Tssr23463 2 32087449 to 32087470 21 - TSS region transcription start site region 23463
Cpgi11494 2 32088347 to 32088957 610 CpG island CpG island 11494
Tssr17246 2 32095518 to 32095595 77 + TSS region transcription start site region 17246
Plpp7 2 32095528 to 32110820 15292 + protein coding gene phospholipid phosphatase 7 (inactive)
Tssr17247 2 32095702 to 32095717 15 + TSS region transcription start site region 17247
Cpgi11495 2 32095908 to 32096258 350 CpG island CpG island 11495
Cpgi11496 2 32109724 to 32109877 153 CpG island CpG island 11496
Cpgi11497 2 32137616 to 32138271 655 CpG island CpG island 11497
Tssr23464 2 32137905 to 32137982 77 - TSS region transcription start site region 23464
Cpgi11498 2 32150389 to 32152162 1773 CpG island CpG island 11498
Tssr17248 2 32151074 to 32151262 188 + TSS region transcription start site region 17248
Prrc2b 2 32151148 to 32234537 83389 + protein coding gene proline-rich coiled-coil 2B
Tssr17249 2 32162378 to 32162410 32 + TSS region transcription start site region 17249
Tssr17250 2 32163037 to 32163045 8 + TSS region transcription start site region 17250
Tssr23465 2 32167930 to 32167978 48 - TSS region transcription start site region 23465
Gm27805 2 32173171 to 32173249 78 + miRNA gene predicted gene, 27805
D2Bwg0886e 2 32178006 to 32178179 173 DNA segment DNA segment, Chr 2, Brigham & Women's Genetics 0886 expressed
Tssr17251 2 32183023 to 32183049 26 + TSS region transcription start site region 17251
Tssr17252 2 32193941 to 32193964 23 + TSS region transcription start site region 17252
Gm22192 2 32221970 to 32222054 84 + snoRNA gene predicted gene, 22192
Tssr17253 2 32225036 to 32225046 10 + TSS region transcription start site region 17253
Gm25632 2 32225653 to 32225737 84 + snoRNA gene predicted gene, 25632
E030004H24Rik 2 32227327 to 32228523 1196 unclassified gene RIKEN cDNA E030004H24 gene
Gm13610 2 32232782 to 32236382 3600 - antisense lncRNA gene predicted gene 13610
Cpgi11499 2 32236183 to 32237036 853 CpG island CpG island 11499
Tssr23466 2 32236351 to 32236363 12 - TSS region transcription start site region 23466
Tssr23467 2 32236365 to 32236373 8 - TSS region transcription start site region 23467
Tssr23468 2 32236377 to 32236393 16 - TSS region transcription start site region 23468
Tssr17254 2 32236579 to 32236595 16 + TSS region transcription start site region 17254
Pomt1 2 32236595 to 32255005 18410 + protein coding gene protein-O-mannosyltransferase 1
Tssr17255 2 32236601 to 32236622 21 + TSS region transcription start site region 17255
Tssr17256 2 32236631 to 32236701 70 + TSS region transcription start site region 17256
Tssr17257 2 32237297 to 32237340 43 + TSS region transcription start site region 17257
Uck1 2 32255002 to 32260159 5157 - protein coding gene uridine-cytidine kinase 1
Cpgi11500 2 32259715 to 32260536 821 CpG island CpG island 11500
Tssr23469 2 32260044 to 32260053 9 - TSS region transcription start site region 23469
Tssr23470 2 32260057 to 32260114 57 - TSS region transcription start site region 23470
Tssr23471 2 32260138 to 32260152 14 - TSS region transcription start site region 23471
Gm13611 2 32271845 to 32272162 317 + pseudogene predicted gene 13611
Tssr17258 2 32278811 to 32278820 9 + TSS region transcription start site region 17258
Swi5 2 32278816 to 32288075 9259 - protein coding gene SWI5 recombination repair homolog (yeast)
Cpgi11501 2 32287384 to 32288719 1335 CpG island CpG island 11501
Tssr23472 2 32287985 to 32287996 11 - TSS region transcription start site region 23472
Tssr23473 2 32288001 to 32288017 16 - TSS region transcription start site region 23473
Tssr23474 2 32288022 to 32288042 20 - TSS region transcription start site region 23474
Golga2 2 32288150 to 32307921 19771 + protein coding gene golgi autoantigen, golgin subfamily a, 2
Tssr17259 2 32288244 to 32288256 12 + TSS region transcription start site region 17259
Tssr17260 2 32288277 to 32288294 17 + TSS region transcription start site region 17260
Tssr17261 2 32288317 to 32288353 36 + TSS region transcription start site region 17261
Tssr23475 2 32288712 to 32288729 17 - TSS region transcription start site region 23475
Cpgi11502 2 32288732 to 32288936 204 CpG island CpG island 11502
D2Mit121 2 32290657 to 32290755 98 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 121
Dnm1 2 32308471 to 32353338 44867 - protein coding gene dynamin 1
Tssr23476 2 32309012 to 32309021 9 - TSS region transcription start site region 23476
Cpgi11503 2 32311645 to 32313021 1376 CpG island CpG island 11503
Tssr23477 2 32312162 to 32312202 40 - TSS region transcription start site region 23477
Tssr23478 2 32312338 to 32312387 49 - TSS region transcription start site region 23478
Tssr23479 2 32315031 to 32315049 18 - TSS region transcription start site region 23479
Gm23363 2 32318265 to 32318343 78 + miRNA gene predicted gene, 23363
Mir199b 2 32318460 to 32318569 109 + miRNA gene microRNA 199b
Tssr23480 2 32319395 to 32319399 4 - TSS region transcription start site region 23480
Tssr23481 2 32323444 to 32323455 11 - TSS region transcription start site region 23481
Tssr23482 2 32323463 to 32323492 29 - TSS region transcription start site region 23482
D2Mit84 2 32325129 to 32325329 200 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 84
Tssr23483 2 32331892 to 32331902 10 - TSS region transcription start site region 23483
Tssr23484 2 32332004 to 32332008 4 - TSS region transcription start site region 23484
Tssr23485 2 32332109 to 32332125 16 - TSS region transcription start site region 23485
Tssr23486 2 32337801 to 32337819 18 - TSS region transcription start site region 23486
Tssr23487 2 32338029 to 32338040 11 - TSS region transcription start site region 23487
Tssr23488 2 32338045 to 32338066 21 - TSS region transcription start site region 23488
Tssr23489 2 32338073 to 32338085 12 - TSS region transcription start site region 23489
Cpgi11504 2 32348542 to 32348738 196 CpG island CpG island 11504
Tssr23490 2 32349606 to 32349615 9 - TSS region transcription start site region 23490
Cpgi11505 2 32352200 to 32353652 1452 CpG island CpG island 11505
Tssr23491 2 32353251 to 32353282 31 - TSS region transcription start site region 23491
Tssr23492 2 32353283 to 32353311 28 - TSS region transcription start site region 23492
Tssr23493 2 32353312 to 32353324 12 - TSS region transcription start site region 23493
Gm39787 2 32355759 to 32357691 1932 + lncRNA gene predicted gene, 39787
Cpgi11506 2 32361473 to 32361755 282 CpG island CpG island 11506
Cpgi11507 2 32362514 to 32363726 1212 CpG island CpG island 11507
Tssr17262 2 32363004 to 32363142 138 + TSS region transcription start site region 17262
Ciz1 2 32363005 to 32378313 15308 + protein coding gene CDKN1A interacting zinc finger protein 1
Tssr17263 2 32363168 to 32363177 9 + TSS region transcription start site region 17263
Tssr17264 2 32363192 to 32363262 70 + TSS region transcription start site region 17264
Tssr17265 2 32363680 to 32363693 13 + TSS region transcription start site region 17265
Tssr17266 2 32374386 to 32374422 36 + TSS region transcription start site region 17266
Tssr17267 2 32376299 to 32376315 16 + TSS region transcription start site region 17267
1110008P14Rik 2 32379101 to 32381915 2814 - protein coding gene RIKEN cDNA 1110008P14 gene
Tssr23494 2 32379426 to 32379476 50 - TSS region transcription start site region 23494