Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:30332899-30984007

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174 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nup188 2 30286422 to 30344263 57841 + protein coding gene nucleoporin 188
Sh3glb2 2 30344809 to 30359337 14528 - protein coding gene SH3-domain GRB2-like endophilin B2
Tssr23364 2 30350862 to 30350878 16 - TSS region transcription start site region 23364
Cpgi11433 2 30358651 to 30359680 1029 CpG island CpG island 11433
Tssr23365 2 30359190 to 30359272 82 - TSS region transcription start site region 23365
Tssr23366 2 30359278 to 30359341 63 - TSS region transcription start site region 23366
Cpgi11434 2 30363829 to 30364740 911 CpG island CpG island 11434
Tssr17109 2 30364227 to 30364260 33 + TSS region transcription start site region 17109
Miga2 2 30364233 to 30385521 21288 + protein coding gene mitoguardin 2
Tssr17110 2 30364262 to 30364304 42 + TSS region transcription start site region 17110
Gm47292 2 30367676 to 30367771 95 + miRNA gene predicted gene, 47292
Cpgi11435 2 30391976 to 30393307 1331 CpG island CpG island 11435
Dolpp1 2 30392254 to 30400529 8275 + protein coding gene dolichyl pyrophosphate phosphatase 1
Tssr17111 2 30392261 to 30392305 44 + TSS region transcription start site region 17111
Tssr17112 2 30392405 to 30392440 35 + TSS region transcription start site region 17112
Tssr17113 2 30392447 to 30392458 11 + TSS region transcription start site region 17113
Tssr17114 2 30396442 to 30396462 20 + TSS region transcription start site region 17114
Crat 2 30400476 to 30415748 15272 - protein coding gene carnitine acetyltransferase
Tssr23367 2 30406402 to 30406415 13 - TSS region transcription start site region 23367
Tssr23368 2 30413270 to 30413299 29 - TSS region transcription start site region 23368
Gm16323 2 30413716 to 30415338 1622 + antisense lncRNA gene predicted gene 16323
Tssr23369 2 30414104 to 30414118 14 - TSS region transcription start site region 23369
Tssr23370 2 30414169 to 30414180 11 - TSS region transcription start site region 23370
Cpgi11436 2 30415091 to 30416679 1588 CpG island CpG island 11436
Tssr23371 2 30415302 to 30415368 66 - TSS region transcription start site region 23371
Tssr23372 2 30415389 to 30415410 21 - TSS region transcription start site region 23372
Tssr23373 2 30415418 to 30415429 11 - TSS region transcription start site region 23373
Tssr23374 2 30415438 to 30415449 11 - TSS region transcription start site region 23374
Tssr23375 2 30415460 to 30415505 45 - TSS region transcription start site region 23375
Tssr23376 2 30415509 to 30415560 51 - TSS region transcription start site region 23376
Tssr23377 2 30415572 to 30415612 40 - TSS region transcription start site region 23377
Tssr23378 2 30415614 to 30415624 10 - TSS region transcription start site region 23378
Tssr17115 2 30415618 to 30415683 65 + TSS region transcription start site region 17115
Tssr23379 2 30415634 to 30415708 74 - TSS region transcription start site region 23379
Tssr23380 2 30415767 to 30415774 7 - TSS region transcription start site region 23380
Tssr23381 2 30416003 to 30416045 42 - TSS region transcription start site region 23381
Tssr17116 2 30416031 to 30416077 46 + TSS region transcription start site region 17116
Ptpa 2 30416050 to 30447807 31757 + protein coding gene protein phosphatase 2 protein activator
Tssr17117 2 30416080 to 30416090 10 + TSS region transcription start site region 17117
Tssr17118 2 30416096 to 30416147 51 + TSS region transcription start site region 17118
Tssr17119 2 30416187 to 30416221 34 + TSS region transcription start site region 17119
Tssr17120 2 30430042 to 30430047 5 + TSS region transcription start site region 17120
Tssr17121 2 30439507 to 30439534 27 + TSS region transcription start site region 17121
Tssr17122 2 30441831 to 30441836 5 + TSS region transcription start site region 17122
Tssr17123 2 30441919 to 30441949 30 + TSS region transcription start site region 17123
Tssr17124 2 30441978 to 30442004 26 + TSS region transcription start site region 17124
Tssr17125 2 30442063 to 30442078 15 + TSS region transcription start site region 17125
Tssr17126 2 30445634 to 30445647 13 + TSS region transcription start site region 17126
Tssr17127 2 30466379 to 30466384 5 + TSS region transcription start site region 17127
Tssr458 2 30469220 to 30469222 2 - TSS region transcription start site region 458
Cpgi11437 2 30469670 to 30470901 1231 CpG island CpG island 11437
Cpgi11438 2 30472332 to 30474845 2513 CpG island CpG island 11438
Ier5l 2 30472631 to 30474199 1568 - protein coding gene immediate early response 5-like
Tssr23382 2 30473474 to 30473521 47 - TSS region transcription start site region 23382
Tssr23383 2 30474212 to 30474222 10 - TSS region transcription start site region 23383
Gm31291 2 30475447 to 30489052 13605 + lncRNA gene predicted gene, 31291
Gm39781 2 30497826 to 30502128 4302 + lncRNA gene predicted gene, 39781
Gm14487 2 30534729 to 30539022 4293 + lincRNA gene predicted gene 14487
Gm31585 2 30544429 to 30547844 3415 + lncRNA gene predicted gene, 31585
Cpgi11439 2 30545038 to 30545552 514 CpG island CpG island 11439
Tssr23384 2 30556582 to 30556617 35 - TSS region transcription start site region 23384
Cpgi11440 2 30594595 to 30594836 241 CpG island CpG island 11440
Tssr23385 2 30594901 to 30594917 16 - TSS region transcription start site region 23385
Tssr17128 2 30595037 to 30595048 11 + TSS region transcription start site region 17128
Cstad 2 30595044 to 30608945 13901 + protein coding gene CSA-conditional, T cell activation-dependent protein
Cpgi11441 2 30595189 to 30595342 153 CpG island CpG island 11441
D2Mit33 2 30602309 to 30602488 179 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 33
D2Dcr46 2 30602347 to 30602475 128 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 46
Cpgi11442 2 30604978 to 30605135 157 CpG island CpG island 11442
9330198N18Rik 2 30629210 to 30643463 14253 + lincRNA gene RIKEN cDNA 9330198N18 gene
Tssr23386 2 30629891 to 30629895 4 - TSS region transcription start site region 23386
Tssr17129 2 30636549 to 30636562 13 + TSS region transcription start site region 17129
Gm32316 2 30647544 to 30655643 8099 - lncRNA gene predicted gene, 32316
Tssr17130 2 30654871 to 30654880 9 + TSS region transcription start site region 17130
Cpgi11443 2 30657899 to 30659007 1108 CpG island CpG island 11443
Tssr23387 2 30658420 to 30658434 14 - TSS region transcription start site region 23387
Gm14486 2 30658468 to 30678011 19543 - lincRNA gene predicted gene 14486
Tssr17131 2 30658689 to 30658732 43 + TSS region transcription start site region 17131
Cpgi11444 2 30676537 to 30677446 909 CpG island CpG island 11444
Cpgi11445 2 30687196 to 30687595 399 CpG island CpG island 11445
Cpgi11446 2 30692709 to 30693835 1126 CpG island CpG island 11446
Cpgi11447 2 30707379 to 30708731 1352 CpG island CpG island 11447
Cpgi11448 2 30711340 to 30712492 1152 CpG island CpG island 11448
Tssr17132 2 30712345 to 30712349 4 + TSS region transcription start site region 17132
Gm14488 2 30713147 to 30720057 6910 - unclassified non-coding RNA gene predicted gene 14488
Tssr17133 2 30717480 to 30717509 29 + TSS region transcription start site region 17133
Cpgi11449 2 30718104 to 30718475 371 CpG island CpG island 11449
Tssr17134 2 30718551 to 30718590 39 + TSS region transcription start site region 17134
Cpgi11450 2 30718852 to 30719238 386 CpG island CpG island 11450
Tssr17135 2 30719258 to 30719294 36 + TSS region transcription start site region 17135
Tssr23388 2 30720022 to 30720033 11 - TSS region transcription start site region 23388
Mir3089 2 30721210 to 30721293 83 + miRNA gene microRNA 3089
Gm39782 2 30721563 to 30723783 2220 - lncRNA gene predicted gene, 39782
Cpgi11451 2 30725707 to 30726142 435 CpG island CpG island 11451
Cpgi11452 2 30771145 to 30772233 1088 CpG island CpG island 11452
Gm39783 2 30771515 to 30783618 12103 + lncRNA gene predicted gene, 39783
Gm39784 2 30783661 to 30787232 3571 - lncRNA gene predicted gene, 39784
Cpgi11453 2 30794360 to 30795033 673 CpG island CpG island 11453
1700001O22Rik 2 30795563 to 30803723 8160 - protein coding gene RIKEN cDNA 1700001O22 gene
Tssr23389 2 30796631 to 30796639 8 - TSS region transcription start site region 23389
Tssr23390 2 30796673 to 30796700 27 - TSS region transcription start site region 23390
Cpgi11454 2 30800844 to 30801944 1100 CpG island CpG island 11454
Tssr23391 2 30801698 to 30801742 44 - TSS region transcription start site region 23391
Tssr23392 2 30803625 to 30803673 48 - TSS region transcription start site region 23392
Tssr17136 2 30803775 to 30803783 8 + TSS region transcription start site region 17136
Tssr17137 2 30803785 to 30803796 11 + TSS region transcription start site region 17137
4930527E20Rik 2 30803793 to 30807429 3636 + antisense lncRNA gene RIKEN cDNA 4930527E20 gene
Cpgi11455 2 30807306 to 30808449 1143 CpG island CpG island 11455
Tssr17138 2 30807370 to 30807391 21 + TSS region transcription start site region 17138
Tssr23393 2 30807535 to 30807574 39 - TSS region transcription start site region 23393
Ntmt1 2 30807826 to 30823033 15207 + protein coding gene N-terminal Xaa-Pro-Lys N-methyltransferase 1
Tssr17139 2 30807928 to 30807999 71 + TSS region transcription start site region 17139
Asb6 2 30823097 to 30828300 5203 - protein coding gene ankyrin repeat and SOCS box-containing 6
Cpgi11456 2 30827506 to 30828650 1144 CpG island CpG island 11456
Tssr23394 2 30828182 to 30828194 12 - TSS region transcription start site region 23394
Tssr23395 2 30828201 to 30828219 18 - TSS region transcription start site region 23395
Tssr23396 2 30828228 to 30828311 83 - TSS region transcription start site region 23396
Cpgi11457 2 30844688 to 30846296 1608 CpG island CpG island 11457
Prrx2 2 30845064 to 30881251 36187 + protein coding gene paired related homeobox 2
Tssr17140 2 30845268 to 30845304 36 + TSS region transcription start site region 17140
Tssr17141 2 30845310 to 30845323 13 + TSS region transcription start site region 17141
Tssr17142 2 30845337 to 30845353 16 + TSS region transcription start site region 17142
Tssr17143 2 30845361 to 30845396 35 + TSS region transcription start site region 17143
Tssr17144 2 30845463 to 30845464 1 + TSS region transcription start site region 17144
Tssr17145 2 30845483 to 30845508 25 + TSS region transcription start site region 17145
Tssr17146 2 30845536 to 30845541 5 + TSS region transcription start site region 17146
Cpgi11458 2 30864608 to 30865283 675 CpG island CpG island 11458
Ptges 2 30889471 to 30903297 13826 - protein coding gene prostaglandin E synthase
Tssr23397 2 30890075 to 30890106 31 - TSS region transcription start site region 23397
Tssr23398 2 30897502 to 30897514 12 - TSS region transcription start site region 23398
Tssr23399 2 30897518 to 30897543 25 - TSS region transcription start site region 23399
Tssr17147 2 30901627 to 30901634 7 + TSS region transcription start site region 17147
Tssr23400 2 30903255 to 30903269 14 - TSS region transcription start site region 23400
Gm39785 2 30912085 to 30930314 18229 - lncRNA gene predicted gene, 39785
Tssr17148 2 30913365 to 30913374 9 + TSS region transcription start site region 17148
Tssr17149 2 30913416 to 30913432 16 + TSS region transcription start site region 17149
Tssr17150 2 30913460 to 30913493 33 + TSS region transcription start site region 17150
Tssr17151 2 30919514 to 30919525 11 + TSS region transcription start site region 17151
Tssr23401 2 30919655 to 30919676 21 - TSS region transcription start site region 23401
Tssr23402 2 30920280 to 30920305 25 - TSS region transcription start site region 23402
Tssr23403 2 30920376 to 30920379 3 - TSS region transcription start site region 23403
Tssr23404 2 30921906 to 30921920 14 - TSS region transcription start site region 23404
Gm13400 2 30923978 to 30924357 379 - pseudogene predicted gene 13400
Tssr23405 2 30924913 to 30924954 41 - TSS region transcription start site region 23405
Tssr17152 2 30925463 to 30925474 11 + TSS region transcription start site region 17152
Tssr17153 2 30927647 to 30927671 24 + TSS region transcription start site region 17153
Tssr23406 2 30928048 to 30928061 13 - TSS region transcription start site region 23406
Tssr23407 2 30928952 to 30928998 46 - TSS region transcription start site region 23407
Tssr17154 2 30929129 to 30929168 39 + TSS region transcription start site region 17154
Cpgi11459 2 30929647 to 30929982 335 CpG island CpG island 11459
Tssr23408 2 30929830 to 30929893 63 - TSS region transcription start site region 23408
Tssr23409 2 30929894 to 30929908 14 - TSS region transcription start site region 23409
Tssr17155 2 30930019 to 30930037 18 + TSS region transcription start site region 17155
Tssr23410 2 30930090 to 30930105 15 - TSS region transcription start site region 23410
Tssr23411 2 30932022 to 30932071 49 - TSS region transcription start site region 23411
Cpgi11460 2 30952594 to 30953506 912 CpG island CpG island 11460
Tssr17156 2 30952955 to 30953016 61 + TSS region transcription start site region 17156
Tor1b 2 30952959 to 30959015 6056 + protein coding gene torsin family 1, member B
Tor1a 2 30960627 to 30967933 7306 - protein coding gene torsin family 1, member A (torsin A)
Tssr17157 2 30963099 to 30963149 50 + TSS region transcription start site region 17157
Tssr17158 2 30965841 to 30965845 4 + TSS region transcription start site region 17158
Cpgi11461 2 30966987 to 30968100 1113 CpG island CpG island 11461
Tssr23412 2 30967820 to 30967830 10 - TSS region transcription start site region 23412
Tssr23413 2 30967846 to 30967856 10 - TSS region transcription start site region 23413
Tssr23414 2 30967859 to 30967924 65 - TSS region transcription start site region 23414
BC005624 2 30972177 to 30982201 10024 - protein coding gene cDNA sequence BC005624
Cpgi11462 2 30981436 to 30982840 1404 CpG island CpG island 11462
Tssr23415 2 30981857 to 30981947 90 - TSS region transcription start site region 23415
Tssr17159 2 30981954 to 30981965 11 + TSS region transcription start site region 17159
Tssr17160 2 30981979 to 30981994 15 + TSS region transcription start site region 17160
Tssr23416 2 30982182 to 30982224 42 - TSS region transcription start site region 23416
Usp20 2 30982279 to 31022655 40376 + protein coding gene ubiquitin specific peptidase 20
Tssr17161 2 30982328 to 30982348 20 + TSS region transcription start site region 17161
Tssr17162 2 30982350 to 30982376 26 + TSS region transcription start site region 17162