Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:30022905-34252982

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974 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia24 2 24789103 to 33633160 8844057 QTL collagen induced arthritis QTL 24
Cia25 2 24789103 to 33633160 8844057 QTL collagen induced arthritis QTL 25
Sptan1 2 29965560 to 30031451 65891 + protein coding gene spectrin alpha, non-erythrocytic 1
Wdr34 2 30031551 to 30048879 17328 - protein coding gene WD repeat domain 34
Cpgi11421 2 30048209 to 30049298 1089 CpG island CpG island 11421
Tssr23343 2 30048827 to 30048891 64 - TSS region transcription start site region 23343
2410198J08Rik 2 30048961 to 30049377 416 unclassified gene RIKEN cDNA 2410198J08 gene
Tssr17062 2 30061806 to 30061815 9 + TSS region transcription start site region 17062
Cpgi11422 2 30061816 to 30063260 1444 CpG island CpG island 11422
Tssr17063 2 30061838 to 30061841 3 + TSS region transcription start site region 17063
Tssr17064 2 30061847 to 30061859 12 + TSS region transcription start site region 17064
Tssr17065 2 30061861 to 30061864 3 + TSS region transcription start site region 17065
Tssr17066 2 30061882 to 30061891 9 + TSS region transcription start site region 17066
Tssr17067 2 30061905 to 30061912 7 + TSS region transcription start site region 17067
Tssr17068 2 30061920 to 30061929 9 + TSS region transcription start site region 17068
Tssr17069 2 30061949 to 30061965 16 + TSS region transcription start site region 17069
Set 2 30061996 to 30072577 10581 + protein coding gene SET nuclear oncogene
Tssr17070 2 30062017 to 30062043 26 + TSS region transcription start site region 17070
Tssr17071 2 30062045 to 30062078 33 + TSS region transcription start site region 17071
Tssr17072 2 30062090 to 30062098 8 + TSS region transcription start site region 17072
Tssr17073 2 30062522 to 30062545 23 + TSS region transcription start site region 17073
Tssr17074 2 30062551 to 30062570 19 + TSS region transcription start site region 17074
Tssr17075 2 30062718 to 30062732 14 + TSS region transcription start site region 17075
Cpgi11423 2 30065917 to 30067694 1777 CpG island CpG island 11423
Tssr17076 2 30066419 to 30066461 42 + TSS region transcription start site region 17076
Tssr17077 2 30066488 to 30066530 42 + TSS region transcription start site region 17077
Tssr17078 2 30066538 to 30066567 29 + TSS region transcription start site region 17078
Tssr17079 2 30066695 to 30066707 12 + TSS region transcription start site region 17079
Tssr17080 2 30066709 to 30066723 14 + TSS region transcription start site region 17080
Tssr17081 2 30066782 to 30066798 16 + TSS region transcription start site region 17081
Tssr17082 2 30066799 to 30066821 22 + TSS region transcription start site region 17082
Tssr17083 2 30066832 to 30066843 11 + TSS region transcription start site region 17083
Tssr17084 2 30067159 to 30067187 28 + TSS region transcription start site region 17084
Cpgi11424 2 30077129 to 30078160 1031 CpG island CpG island 11424
Pkn3 2 30077684 to 30091022 13338 + protein coding gene protein kinase N3
Tssr17085 2 30080432 to 30080473 41 + TSS region transcription start site region 17085
Zdhhc12 2 30090944 to 30093635 2691 - protein coding gene zinc finger, DHHC domain containing 12
Cpgi11425 2 30093299 to 30094087 788 CpG island CpG island 11425
Tssr23344 2 30093533 to 30093544 11 - TSS region transcription start site region 23344
Tssr23345 2 30093561 to 30093603 42 - TSS region transcription start site region 23345
Tssr23346 2 30093607 to 30093641 34 - TSS region transcription start site region 23346
Tssr23347 2 30093642 to 30093679 37 - TSS region transcription start site region 23347
Zer1 2 30097283 to 30124585 27302 - protein coding gene zyg-11 related, cell cycle regulator
Cpgi11426 2 30124059 to 30124965 906 CpG island CpG island 11426
Gm3146 2 30124071 to 30126328 2257 unclassified gene predicted gene 3146
Tssr23348 2 30124459 to 30124470 11 - TSS region transcription start site region 23348
Tssr23349 2 30124477 to 30124509 32 - TSS region transcription start site region 23349
Tssr23350 2 30124529 to 30124587 58 - TSS region transcription start site region 23350
Tssr23351 2 30124774 to 30124807 33 - TSS region transcription start site region 23351
Cpgi11427 2 30133501 to 30134276 775 CpG island CpG island 11427
Tssr23352 2 30133661 to 30133690 29 - TSS region transcription start site region 23352
Tbc1d13 2 30133750 to 30152013 18263 + protein coding gene TBC1 domain family, member 13
Tssr17086 2 30133751 to 30133806 55 + TSS region transcription start site region 17086
Tssr17087 2 30133849 to 30133865 16 + TSS region transcription start site region 17087
Tssr17088 2 30133873 to 30133892 19 + TSS region transcription start site region 17088
Tssr17089 2 30134681 to 30134709 28 + TSS region transcription start site region 17089
Tssr17090 2 30146806 to 30146825 19 + TSS region transcription start site region 17090
Slc39a1-ps 2 30159398 to 30160366 968 + pseudogene solute carrier family 39 (zinc transporter), member 1, pseudogene
Gm31080 2 30162606 to 30170335 7729 + lncRNA gene predicted gene, 31080
Cpgi11428 2 30171151 to 30172470 1319 CpG island CpG island 11428
Tssr17091 2 30171486 to 30171497 11 + TSS region transcription start site region 17091
Endog 2 30171493 to 30174069 2576 + protein coding gene endonuclease G
Tssr17092 2 30171502 to 30171520 18 + TSS region transcription start site region 17092
Tssr17093 2 30171529 to 30171536 7 + TSS region transcription start site region 17093
Tssr17094 2 30171543 to 30171554 11 + TSS region transcription start site region 17094
Tssr17095 2 30171557 to 30171564 7 + TSS region transcription start site region 17095
Spout1 2 30173453 to 30178459 5006 - protein coding gene SPOUT domain containing methyltransferase 1
Cpgi11429 2 30178005 to 30178756 751 CpG island CpG island 11429
Tssr23353 2 30178422 to 30178473 51 - TSS region transcription start site region 23353
Tssr23354 2 30178588 to 30178600 12 - TSS region transcription start site region 23354
Tssr17096 2 30184825 to 30184831 6 + TSS region transcription start site region 17096
Kyat1 2 30185124 to 30205847 20723 - protein coding gene kynurenine aminotransferase 1
Tssr23355 2 30194136 to 30194143 7 - TSS region transcription start site region 23355
Tssr23356 2 30194151 to 30194167 16 - TSS region transcription start site region 23356
Cpgi11430 2 30205595 to 30206291 696 CpG island CpG island 11430
Tssr23357 2 30205674 to 30205693 19 - TSS region transcription start site region 23357
Tssr23358 2 30205699 to 30205716 17 - TSS region transcription start site region 23358
Tssr23359 2 30205728 to 30205741 13 - TSS region transcription start site region 23359
Tssr23360 2 30205772 to 30205791 19 - TSS region transcription start site region 23360
Tssr23361 2 30205794 to 30205835 41 - TSS region transcription start site region 23361
Gm31201 2 30205887 to 30209507 3620 + lncRNA gene predicted gene, 31201
Cpgi11431 2 30237013 to 30238600 1587 CpG island CpG island 11431
1700084E18Rik 2 30237197 to 30237631 434 - antisense lncRNA gene RIKEN cDNA 1700084E18 gene
Tssr23362 2 30237626 to 30237655 29 - TSS region transcription start site region 23362
Tssr17097 2 30237665 to 30237672 7 + TSS region transcription start site region 17097
Tssr17098 2 30237680 to 30237747 67 + TSS region transcription start site region 17098
Lrrc8a 2 30237769 to 30263790 26021 + protein coding gene leucine rich repeat containing 8A
Gm28035 2 30240567 to 30282148 41581 + protein coding gene predicted gene, 28035
Tssr17099 2 30262798 to 30262802 4 + TSS region transcription start site region 17099
Tssr17100 2 30263059 to 30263106 47 + TSS region transcription start site region 17100
Phyhd1 2 30266203 to 30282149 15946 + protein coding gene phytanoyl-CoA dioxygenase domain containing 1
Tssr17101 2 30266513 to 30266564 51 + TSS region transcription start site region 17101
Tssr17102 2 30266569 to 30266592 23 + TSS region transcription start site region 17102
Tssr17103 2 30266803 to 30266886 83 + TSS region transcription start site region 17103
Tssr17104 2 30267368 to 30267400 32 + TSS region transcription start site region 17104
Gm28038 2 30281043 to 30301078 20035 + protein coding gene predicted gene, 28038
Dolk 2 30284231 to 30286334 2103 - protein coding gene dolichol kinase
Cpgi11432 2 30285590 to 30287035 1445 CpG island CpG island 11432
Tssr23363 2 30286312 to 30286349 37 - TSS region transcription start site region 23363
Tssr17105 2 30286383 to 30286394 11 + TSS region transcription start site region 17105
Tssr17106 2 30286406 to 30286442 36 + TSS region transcription start site region 17106
Nup188 2 30286422 to 30344263 57841 + protein coding gene nucleoporin 188
Gm39780 2 30298866 to 30299322 456 + lncRNA gene predicted gene, 39780
Gm14471 2 30306067 to 30323986 17919 - unclassified non-coding RNA gene predicted gene 14471
Tssr17107 2 30312627 to 30312651 24 + TSS region transcription start site region 17107
Tssr17108 2 30322485 to 30322506 21 + TSS region transcription start site region 17108
Sh3glb2 2 30344809 to 30359337 14528 - protein coding gene SH3-domain GRB2-like endophilin B2
Tssr23364 2 30350862 to 30350878 16 - TSS region transcription start site region 23364
Cpgi11433 2 30358651 to 30359680 1029 CpG island CpG island 11433
Tssr23365 2 30359190 to 30359272 82 - TSS region transcription start site region 23365
Tssr23366 2 30359278 to 30359341 63 - TSS region transcription start site region 23366
Cpgi11434 2 30363829 to 30364740 911 CpG island CpG island 11434
Tssr17109 2 30364227 to 30364260 33 + TSS region transcription start site region 17109
Miga2 2 30364233 to 30385521 21288 + protein coding gene mitoguardin 2
Tssr17110 2 30364262 to 30364304 42 + TSS region transcription start site region 17110
Gm47292 2 30367676 to 30367771 95 + miRNA gene predicted gene, 47292
Cpgi11435 2 30391976 to 30393307 1331 CpG island CpG island 11435
Dolpp1 2 30392254 to 30400529 8275 + protein coding gene dolichyl pyrophosphate phosphatase 1
Tssr17111 2 30392261 to 30392305 44 + TSS region transcription start site region 17111
Tssr17112 2 30392405 to 30392440 35 + TSS region transcription start site region 17112
Tssr17113 2 30392447 to 30392458 11 + TSS region transcription start site region 17113
Tssr17114 2 30396442 to 30396462 20 + TSS region transcription start site region 17114
Crat 2 30400476 to 30415748 15272 - protein coding gene carnitine acetyltransferase
Tssr23367 2 30406402 to 30406415 13 - TSS region transcription start site region 23367
Tssr23368 2 30413270 to 30413299 29 - TSS region transcription start site region 23368
Gm16323 2 30413716 to 30415338 1622 + antisense lncRNA gene predicted gene 16323
Tssr23369 2 30414104 to 30414118 14 - TSS region transcription start site region 23369
Tssr23370 2 30414169 to 30414180 11 - TSS region transcription start site region 23370
Cpgi11436 2 30415091 to 30416679 1588 CpG island CpG island 11436
Tssr23371 2 30415302 to 30415368 66 - TSS region transcription start site region 23371
Tssr23372 2 30415389 to 30415410 21 - TSS region transcription start site region 23372
Tssr23373 2 30415418 to 30415429 11 - TSS region transcription start site region 23373
Tssr23374 2 30415438 to 30415449 11 - TSS region transcription start site region 23374
Tssr23375 2 30415460 to 30415505 45 - TSS region transcription start site region 23375
Tssr23376 2 30415509 to 30415560 51 - TSS region transcription start site region 23376
Tssr23377 2 30415572 to 30415612 40 - TSS region transcription start site region 23377
Tssr23378 2 30415614 to 30415624 10 - TSS region transcription start site region 23378
Tssr17115 2 30415618 to 30415683 65 + TSS region transcription start site region 17115
Tssr23379 2 30415634 to 30415708 74 - TSS region transcription start site region 23379
Tssr23380 2 30415767 to 30415774 7 - TSS region transcription start site region 23380
Tssr23381 2 30416003 to 30416045 42 - TSS region transcription start site region 23381
Tssr17116 2 30416031 to 30416077 46 + TSS region transcription start site region 17116
Ptpa 2 30416050 to 30447807 31757 + protein coding gene protein phosphatase 2 protein activator
Tssr17117 2 30416080 to 30416090 10 + TSS region transcription start site region 17117
Tssr17118 2 30416096 to 30416147 51 + TSS region transcription start site region 17118
Tssr17119 2 30416187 to 30416221 34 + TSS region transcription start site region 17119
Tssr17120 2 30430042 to 30430047 5 + TSS region transcription start site region 17120
Tssr17121 2 30439507 to 30439534 27 + TSS region transcription start site region 17121
Tssr17122 2 30441831 to 30441836 5 + TSS region transcription start site region 17122
Tssr17123 2 30441919 to 30441949 30 + TSS region transcription start site region 17123
Tssr17124 2 30441978 to 30442004 26 + TSS region transcription start site region 17124
Tssr17125 2 30442063 to 30442078 15 + TSS region transcription start site region 17125
Tssr17126 2 30445634 to 30445647 13 + TSS region transcription start site region 17126
Tssr17127 2 30466379 to 30466384 5 + TSS region transcription start site region 17127
Tssr458 2 30469220 to 30469222 2 - TSS region transcription start site region 458
Cpgi11437 2 30469670 to 30470901 1231 CpG island CpG island 11437
Cpgi11438 2 30472332 to 30474845 2513 CpG island CpG island 11438
Ier5l 2 30472631 to 30474199 1568 - protein coding gene immediate early response 5-like
Tssr23382 2 30473474 to 30473521 47 - TSS region transcription start site region 23382
Tssr23383 2 30474212 to 30474222 10 - TSS region transcription start site region 23383
Gm31291 2 30475447 to 30489052 13605 + lncRNA gene predicted gene, 31291
Gm39781 2 30497826 to 30502128 4302 + lncRNA gene predicted gene, 39781
Gm14487 2 30534729 to 30539022 4293 + lincRNA gene predicted gene 14487
Gm31585 2 30544429 to 30547844 3415 + lncRNA gene predicted gene, 31585
Cpgi11439 2 30545038 to 30545552 514 CpG island CpG island 11439
Tssr23384 2 30556582 to 30556617 35 - TSS region transcription start site region 23384
Cpgi11440 2 30594595 to 30594836 241 CpG island CpG island 11440
Tssr23385 2 30594901 to 30594917 16 - TSS region transcription start site region 23385
Tssr17128 2 30595037 to 30595048 11 + TSS region transcription start site region 17128
Cstad 2 30595044 to 30608945 13901 + protein coding gene CSA-conditional, T cell activation-dependent protein
Cpgi11441 2 30595189 to 30595342 153 CpG island CpG island 11441
D2Mit33 2 30602309 to 30602488 179 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 33
D2Dcr46 2 30602347 to 30602475 128 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 46
Cpgi11442 2 30604978 to 30605135 157 CpG island CpG island 11442
9330198N18Rik 2 30629210 to 30643463 14253 + lincRNA gene RIKEN cDNA 9330198N18 gene
Tssr23386 2 30629891 to 30629895 4 - TSS region transcription start site region 23386
Tssr17129 2 30636549 to 30636562 13 + TSS region transcription start site region 17129
Gm32316 2 30647544 to 30655643 8099 - lncRNA gene predicted gene, 32316
Tssr17130 2 30654871 to 30654880 9 + TSS region transcription start site region 17130
Cpgi11443 2 30657899 to 30659007 1108 CpG island CpG island 11443
Tssr23387 2 30658420 to 30658434 14 - TSS region transcription start site region 23387
Gm14486 2 30658468 to 30678011 19543 - lincRNA gene predicted gene 14486
Tssr17131 2 30658689 to 30658732 43 + TSS region transcription start site region 17131
Cpgi11444 2 30676537 to 30677446 909 CpG island CpG island 11444
Cpgi11445 2 30687196 to 30687595 399 CpG island CpG island 11445
Cpgi11446 2 30692709 to 30693835 1126 CpG island CpG island 11446
Cpgi11447 2 30707379 to 30708731 1352 CpG island CpG island 11447
Cpgi11448 2 30711340 to 30712492 1152 CpG island CpG island 11448
Tssr17132 2 30712345 to 30712349 4 + TSS region transcription start site region 17132
Gm14488 2 30713147 to 30720057 6910 - unclassified non-coding RNA gene predicted gene 14488
Tssr17133 2 30717480 to 30717509 29 + TSS region transcription start site region 17133
Cpgi11449 2 30718104 to 30718475 371 CpG island CpG island 11449
Tssr17134 2 30718551 to 30718590 39 + TSS region transcription start site region 17134
Cpgi11450 2 30718852 to 30719238 386 CpG island CpG island 11450
Tssr17135 2 30719258 to 30719294 36 + TSS region transcription start site region 17135
Tssr23388 2 30720022 to 30720033 11 - TSS region transcription start site region 23388
Mir3089 2 30721210 to 30721293 83 + miRNA gene microRNA 3089
Gm39782 2 30721563 to 30723783 2220 - lncRNA gene predicted gene, 39782
Cpgi11451 2 30725707 to 30726142 435 CpG island CpG island 11451
Cpgi11452 2 30771145 to 30772233 1088 CpG island CpG island 11452