Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:28557667-28847698

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cel 2 28555819 to 28563403 7584 - protein coding gene carboxyl ester lipase
Tssr23253 2 28557645 to 28557689 44 - TSS region transcription start site region 23253
Tssr23254 2 28557731 to 28557776 45 - TSS region transcription start site region 23254
Tssr16959 2 28557779 to 28557797 18 + TSS region transcription start site region 16959
Tssr23255 2 28557795 to 28557822 27 - TSS region transcription start site region 23255
Tssr16960 2 28557920 to 28557932 12 + TSS region transcription start site region 16960
Tssr23256 2 28557967 to 28557992 25 - TSS region transcription start site region 23256
Tssr16961 2 28557976 to 28558017 41 + TSS region transcription start site region 16961
Tssr23257 2 28557997 to 28558022 25 - TSS region transcription start site region 23257
Tssr16962 2 28558020 to 28558053 33 + TSS region transcription start site region 16962
Tssr23258 2 28558029 to 28558054 25 - TSS region transcription start site region 23258
Tssr23259 2 28558057 to 28558072 15 - TSS region transcription start site region 23259
Tssr23260 2 28558074 to 28558082 8 - TSS region transcription start site region 23260
Tssr23261 2 28558085 to 28558123 38 - TSS region transcription start site region 23261
Tssr23262 2 28559356 to 28559395 39 - TSS region transcription start site region 23262
Tssr23263 2 28559396 to 28559437 41 - TSS region transcription start site region 23263
Tssr23264 2 28559602 to 28559639 37 - TSS region transcription start site region 23264
Tssr23265 2 28559673 to 28559681 8 - TSS region transcription start site region 23265
Tssr23266 2 28559853 to 28559862 9 - TSS region transcription start site region 23266
Tssr23267 2 28559879 to 28559892 13 - TSS region transcription start site region 23267
Tssr23268 2 28560521 to 28560575 54 - TSS region transcription start site region 23268
Tssr16963 2 28560554 to 28560599 45 + TSS region transcription start site region 16963
Tssr23269 2 28560587 to 28560607 20 - TSS region transcription start site region 23269
Tssr23270 2 28560658 to 28560679 21 - TSS region transcription start site region 23270
Tssr16964 2 28560948 to 28560963 15 + TSS region transcription start site region 16964
Tssr23271 2 28561180 to 28561192 12 - TSS region transcription start site region 23271
Tssr23272 2 28561204 to 28561227 23 - TSS region transcription start site region 23272
Tssr23273 2 28561234 to 28561243 9 - TSS region transcription start site region 23273
Tssr23274 2 28561264 to 28561277 13 - TSS region transcription start site region 23274
Tssr23275 2 28561328 to 28561340 12 - TSS region transcription start site region 23275
Gm13381 2 28562197 to 28576698 14501 + antisense lncRNA gene predicted gene 13381
Tssr23276 2 28562411 to 28562422 11 - TSS region transcription start site region 23276
Tssr23277 2 28562433 to 28562452 19 - TSS region transcription start site region 23277
Tssr16965 2 28562509 to 28562527 18 + TSS region transcription start site region 16965
Tssr23278 2 28563373 to 28563392 19 - TSS region transcription start site region 23278
Gtf3c5 2 28566245 to 28583279 17034 - protein coding gene general transcription factor IIIC, polypeptide 5
Cpgi11389 2 28582563 to 28583377 814 CpG island CpG island 11389
Tssr23279 2 28582716 to 28582724 8 - TSS region transcription start site region 23279
Tssr23280 2 28582977 to 28582996 19 - TSS region transcription start site region 23280
Tssr23281 2 28583011 to 28583020 9 - TSS region transcription start site region 23281
Tssr23282 2 28583147 to 28583174 27 - TSS region transcription start site region 23282
Tssr23283 2 28583195 to 28583230 35 - TSS region transcription start site region 23283
Tssr23284 2 28583239 to 28583274 35 - TSS region transcription start site region 23284
Gm22675 2 28595127 to 28595230 103 + snRNA gene predicted gene, 22675
Gm22824 2 28608195 to 28608286 91 + miRNA gene predicted gene, 22824
Gfi1b 2 28609450 to 28621982 12532 - protein coding gene growth factor independent 1B
Tssr23285 2 28613368 to 28613371 3 - TSS region transcription start site region 23285
Tssr23286 2 28615335 to 28615346 11 - TSS region transcription start site region 23286
Tssr23287 2 28620673 to 28620676 3 - TSS region transcription start site region 23287
Tssr23288 2 28621318 to 28621330 12 - TSS region transcription start site region 23288
Tssr23289 2 28621902 to 28621913 11 - TSS region transcription start site region 23289
Tssr23290 2 28621932 to 28621963 31 - TSS region transcription start site region 23290
Cpgi11390 2 28640808 to 28642083 1275 CpG island CpG island 11390
Tssr16966 2 28641227 to 28641262 35 + TSS region transcription start site region 16966
Tsc1 2 28641228 to 28691167 49939 + protein coding gene tuberous sclerosis 1
Tssr16967 2 28641346 to 28641358 12 + TSS region transcription start site region 16967
Spaca9 2 28692080 to 28699651 7571 - protein coding gene sperm acrosome associated 9
Tssr16968 2 28698852 to 28698863 11 + TSS region transcription start site region 16968
Cpgi11391 2 28699533 to 28700376 843 CpG island CpG island 11391
Tssr23291 2 28699636 to 28699659 23 - TSS region transcription start site region 23291
Tssr23292 2 28699661 to 28699688 27 - TSS region transcription start site region 23292
Tssr23293 2 28699728 to 28699739 11 - TSS region transcription start site region 23293
Tssr16969 2 28699787 to 28699818 31 + TSS region transcription start site region 16969
Tssr16970 2 28700151 to 28700154 3 + TSS region transcription start site region 16970
Tssr16971 2 28700155 to 28700187 32 + TSS region transcription start site region 16971
Ak8 2 28700164 to 28813165 113001 + protein coding gene adenylate kinase 8
Tssr16972 2 28702667 to 28702698 31 + TSS region transcription start site region 16972
Mir3088 2 28733278 to 28733351 73 + miRNA gene microRNA 3088
Gm13385 2 28793350 to 28793569 219 - pseudogene predicted gene 13385
Gm13386 2 28807708 to 28807831 123 - pseudogene predicted gene 13386
Gtf3c4 2 28822299 to 28840360 18061 - protein coding gene general transcription factor IIIC, polypeptide 4
Cpgi11392 2 28839609 to 28841030 1421 CpG island CpG island 11392
Tssr23294 2 28840258 to 28840269 11 - TSS region transcription start site region 23294
Tssr23295 2 28840274 to 28840358 84 - TSS region transcription start site region 23295
Ddx31 2 28840406 to 28905571 65165 + protein coding gene DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31
Tssr16973 2 28840406 to 28840462 56 + TSS region transcription start site region 16973
Tssr16974 2 28840471 to 28840482 11 + TSS region transcription start site region 16974
Tssr16975 2 28840604 to 28840653 49 + TSS region transcription start site region 16975
Tssr16976 2 28840682 to 28840752 70 + TSS region transcription start site region 16976
Tssr16977 2 28840765 to 28840778 13 + TSS region transcription start site region 16977