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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:27016538-27456662

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacfd1 2 27009926 to 27021089 11163 + protein coding gene calcium channel flower domain containing 1
Tssr23171 2 27019931 to 27019953 22 - TSS region transcription start site region 23171
Tssr23172 2 27019978 to 27019993 15 - TSS region transcription start site region 23172
Tssr23173 2 27019997 to 27020017 20 - TSS region transcription start site region 23173
Tssr23174 2 27020046 to 27020061 15 - TSS region transcription start site region 23174
Tssr23175 2 27020068 to 27020077 9 - TSS region transcription start site region 23175
Slc2a6 2 27021363 to 27027998 6635 - protein coding gene solute carrier family 2 (facilitated glucose transporter), member 6
Tssr23176 2 27021885 to 27021896 11 - TSS region transcription start site region 23176
Tssr23177 2 27024299 to 27024321 22 - TSS region transcription start site region 23177
Tssr16835 2 27025792 to 27025840 48 + TSS region transcription start site region 16835
Tssr23178 2 27027271 to 27027288 17 - TSS region transcription start site region 23178
Cpgi11366 2 27027772 to 27028270 498 CpG island CpG island 11366
Tssr23179 2 27027916 to 27027995 79 - TSS region transcription start site region 23179
Tssr16836 2 27034657 to 27034668 11 + TSS region transcription start site region 16836
Gm13397 2 27034680 to 27035554 874 + pseudogene predicted gene 13397
Gm13398 2 27037285 to 27040853 3568 + antisense lncRNA gene predicted gene 13398
Tssr442 2 27037719 to 27037720 1 + TSS region transcription start site region 442
Mymk 2 27061636 to 27072161 10525 - protein coding gene myomaker, myoblast fusion factor
Tssr23180 2 27072028 to 27072042 14 - TSS region transcription start site region 23180
Tssr23181 2 27072083 to 27072093 10 - TSS region transcription start site region 23181
Tssr23182 2 27072116 to 27072170 54 - TSS region transcription start site region 23182
Tssr23183 2 27072175 to 27072186 11 - TSS region transcription start site region 23183
Tssr23184 2 27072203 to 27072216 13 - TSS region transcription start site region 23184
Adamtsl2 2 27079340 to 27108613 29273 + protein coding gene ADAMTS-like 2
Tssr16837 2 27079371 to 27079385 14 + TSS region transcription start site region 16837
Gm36882 2 27100759 to 27102705 1946 - lncRNA gene predicted gene, 36882
Fam163b 2 27110379 to 27142477 32098 - protein coding gene family with sequence similarity 163, member B
Tssr23185 2 27110560 to 27110575 15 - TSS region transcription start site region 23185
Tssr23186 2 27112001 to 27112014 13 - TSS region transcription start site region 23186
Tssr23187 2 27112017 to 27112034 17 - TSS region transcription start site region 23187
Tssr23188 2 27112204 to 27112215 11 - TSS region transcription start site region 23188
Tssr16838 2 27121165 to 27121201 36 + TSS region transcription start site region 16838
Opfaq1 2 27132630 to 9671880 -17460750 QTL open field activity QTL 1
Cfq2 2 27132630 to 56506216 29373586 QTL conditioned fear QTL 2
Cpgi11367 2 27141904 to 27142831 927 CpG island CpG island 11367
Tssr23189 2 27142406 to 27142425 19 - TSS region transcription start site region 23189
Tssr23190 2 27142429 to 27142481 52 - TSS region transcription start site region 23190
Tssr23191 2 27142502 to 27142513 11 - TSS region transcription start site region 23191
Tssr23192 2 27142530 to 27142556 26 - TSS region transcription start site region 23192
Dbhos 2 27144898 to 27162703 17805 - antisense lncRNA gene dopamine beta hydroxylase, opposite strand
Tssr16839 2 27165499 to 27165515 16 + TSS region transcription start site region 16839
Dbh 2 27165507 to 27183204 17697 + protein coding gene dopamine beta hydroxylase
Tssr16840 2 27165520 to 27165531 11 + TSS region transcription start site region 16840
Tssr16841 2 27165563 to 27165570 7 + TSS region transcription start site region 16841
Tssr16842 2 27165643 to 27165683 40 + TSS region transcription start site region 16842
Tssr16843 2 27170529 to 27170546 17 + TSS region transcription start site region 16843
Tssr16844 2 27180979 to 27180983 4 + TSS region transcription start site region 16844
Tssr16845 2 27181568 to 27181587 19 + TSS region transcription start site region 16845
Tssr16846 2 27182137 to 27182148 11 + TSS region transcription start site region 16846
Tssr16847 2 27182210 to 27182232 22 + TSS region transcription start site region 16847
Sardh 2 27188393 to 27248332 59939 - protein coding gene sarcosine dehydrogenase
Sardhos 2 27189382 to 27234710 45328 + antisense lncRNA gene sarcosine dehydrogenase, opposite strand
Tssr23193 2 27189470 to 27189505 35 - TSS region transcription start site region 23193
Tssr23194 2 27205494 to 27205497 3 - TSS region transcription start site region 23194
Tssr23195 2 27209928 to 27209953 25 - TSS region transcription start site region 23195
Tssr23196 2 27215182 to 27215184 2 - TSS region transcription start site region 23196
Tssr23197 2 27225193 to 27225209 16 - TSS region transcription start site region 23197
Tssr16848 2 27229541 to 27229542 1 + TSS region transcription start site region 16848
D2Mit294 2 27236538 to 27236662 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 294
Tssr23198 2 27246722 to 27246733 11 - TSS region transcription start site region 23198
Tssr23199 2 27246741 to 27246750 9 - TSS region transcription start site region 23199
Tssr23200 2 27246755 to 27246777 22 - TSS region transcription start site region 23200
Tssr23201 2 27246779 to 27246784 5 - TSS region transcription start site region 23201
Tssr23202 2 27246785 to 27246803 18 - TSS region transcription start site region 23202
Tssr23203 2 27246814 to 27246875 61 - TSS region transcription start site region 23203
Tssr23204 2 27246886 to 27246904 18 - TSS region transcription start site region 23204
Tssr23205 2 27247184 to 27247193 9 - TSS region transcription start site region 23205
Tssr23206 2 27247195 to 27247207 12 - TSS region transcription start site region 23206
Tssr23207 2 27247210 to 27247254 44 - TSS region transcription start site region 23207
Tssr23208 2 27247260 to 27247303 43 - TSS region transcription start site region 23208
Tssr23209 2 27248304 to 27248320 16 - TSS region transcription start site region 23209
Tssr23210 2 27248335 to 27248346 11 - TSS region transcription start site region 23210
Vav2 2 27262104 to 27427033 164929 - protein coding gene vav 2 oncogene
AA645442 2 27326704 to 27331297 4593 + antisense lncRNA gene expressed sequence AA645442
Tssr23211 2 27392195 to 27392236 41 - TSS region transcription start site region 23211
Gm24049 2 27401852 to 27401951 99 + miRNA gene predicted gene, 24049
Tssr23212 2 27404725 to 27404727 2 - TSS region transcription start site region 23212
D2Mit431.1 2 27422136 to 27422266 130 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 431.1
D2Mit431 2 27422294 to 27422391 97 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 431
Cpgi11368 2 27425288 to 27427541 2253 CpG island CpG island 11368
Tssr23213 2 27426489 to 27426535 46 - TSS region transcription start site region 23213
Tssr23214 2 27426536 to 27426563 27 - TSS region transcription start site region 23214
Tssr23215 2 27426599 to 27426613 14 - TSS region transcription start site region 23215
Tssr23216 2 27426992 to 27427061 69 - TSS region transcription start site region 23216
D2Mit180 2 27434096 to 27434243 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 180
Brd3os 2 27442324 to 27444221 1897 + protein coding gene bromodomain containing 3, opposite strand
Cpgi11369 2 27442331 to 27442907 576 CpG island CpG island 11369
Tssr16849 2 27442457 to 27442570 113 + TSS region transcription start site region 16849
Brd3 2 27445576 to 27507657 62081 - protein coding gene bromodomain containing 3
Tssr23217 2 27447424 to 27447430 6 - TSS region transcription start site region 23217
Tssr23218 2 27447913 to 27447933 20 - TSS region transcription start site region 23218
Mir7578 2 27450549 to 27450630 81 - miRNA gene microRNA 7578