Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:25740314-27210323

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366 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr16770 2 25765531 to 25765535 4 + TSS region transcription start site region 16770
Lcn3 2 25765569 to 25768099 2530 + protein coding gene lipocalin 3
Tssr16771 2 25777015 to 25777021 6 + TSS region transcription start site region 16771
Lcn11 2 25777017 to 25780279 3262 + protein coding gene lipocalin 11
Gm13538 2 25783940 to 25794650 10710 - unclassified non-coding RNA gene predicted gene 13538
Gm13539 2 25784617 to 25787022 2405 + lncRNA gene predicted gene 13539
Tssr23046 2 25785674 to 25785693 19 - TSS region transcription start site region 23046
Glt6d1 2 25793859 to 25815848 21989 - protein coding gene glycosyltransferase 6 domain containing 1
Gm35689 2 25814503 to 25815771 1268 + lncRNA gene predicted gene, 35689
Tssr23047 2 25815839 to 25815858 19 - TSS region transcription start site region 23047
Tssr23048 2 25815862 to 25815871 9 - TSS region transcription start site region 23048
Tssr23049 2 25822112 to 25822116 4 - TSS region transcription start site region 23049
Tssr16772 2 25823144 to 25823160 16 + TSS region transcription start site region 16772
Lcn9 2 25823153 to 25825537 2384 + protein coding gene lipocalin 9
Tssr16773 2 25823465 to 25823513 48 + TSS region transcription start site region 16773
Tssr16774 2 25823685 to 25823703 18 + TSS region transcription start site region 16774
Sohlh1 2 25842995 to 25847248 4253 - protein coding gene spermatogenesis and oogenesis specific basic helix-loop-helix 1
Tssr23050 2 25847296 to 25847307 11 - TSS region transcription start site region 23050
Tssr23051 2 25847324 to 25847339 15 - TSS region transcription start site region 23051
Cpgi11332 2 25863536 to 25864559 1023 CpG island CpG island 11332
Kcnt1 2 25863791 to 25918273 54482 + protein coding gene potassium channel, subfamily T, member 1
Cpgi11333 2 25877283 to 25878542 1259 CpG island CpG island 11333
Tssr16775 2 25877847 to 25877883 36 + TSS region transcription start site region 16775
Tssr16776 2 25877887 to 25877898 11 + TSS region transcription start site region 16776
Tssr16777 2 25889215 to 25889218 3 + TSS region transcription start site region 16777
6230426I18Rik 2 25923343 to 25924808 1465 unclassified gene RIKEN cDNA 6230426I18 gene
Camsap1 2 25926838 to 25983282 56444 - protein coding gene calmodulin regulated spectrin-associated protein 1
Tssr23052 2 25945826 to 25945832 6 - TSS region transcription start site region 23052
Tssr23053 2 25946080 to 25946091 11 - TSS region transcription start site region 23053
D2Mit318 2 25950374 to 25950574 200 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 318
Cpgi11334 2 25982157 to 25984141 1984 CpG island CpG island 11334
Tssr23054 2 25983130 to 25983154 24 - TSS region transcription start site region 23054
Tssr23055 2 25983177 to 25983234 57 - TSS region transcription start site region 23055
Tssr23056 2 25983236 to 25983290 54 - TSS region transcription start site region 23056
A230056K03Rik 2 25983675 to 25984627 952 unclassified gene RIKEN cDNA A230056K03 gene
Gm13542 2 25994547 to 25995183 636 - pseudogene predicted gene 13542
Ubac1 2 25998543 to 26021747 23204 - protein coding gene ubiquitin associated domain containing 1
Tssr23057 2 26005322 to 26005326 4 - TSS region transcription start site region 23057
Tssr23058 2 26013728 to 26013753 25 - TSS region transcription start site region 23058
Cpgi11335 2 26021042 to 26022265 1223 CpG island CpG island 11335
Tssr23059 2 26021547 to 26021558 11 - TSS region transcription start site region 23059
Tssr23060 2 26021560 to 26021613 53 - TSS region transcription start site region 23060
Tssr23061 2 26021679 to 26021779 100 - TSS region transcription start site region 23061
Cpgi11336 2 26040038 to 26040301 263 CpG island CpG island 11336
D2Mit521 2 26050274 to 26050396 122 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 521
Nacc2 2 26055535 to 26122811 67276 - protein coding gene nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
Gm13554 2 26059010 to 26060275 1265 + antisense lncRNA gene predicted gene 13554
Tssr23062 2 26062330 to 26062342 12 - TSS region transcription start site region 23062
Tssr23063 2 26072676 to 26072677 1 - TSS region transcription start site region 23063
Cpgi11337 2 26091272 to 26092223 951 CpG island CpG island 11337
Tssr23064 2 26091776 to 26091791 15 - TSS region transcription start site region 23064
Tssr23065 2 26091831 to 26091855 24 - TSS region transcription start site region 23065
Tssr23066 2 26091914 to 26091923 9 - TSS region transcription start site region 23066
Tssr23067 2 26091933 to 26091959 26 - TSS region transcription start site region 23067
Tssr23068 2 26091961 to 26091988 27 - TSS region transcription start site region 23068
Tssr23069 2 26091992 to 26092003 11 - TSS region transcription start site region 23069
Tssr23070 2 26092018 to 26092033 15 - TSS region transcription start site region 23070
Tssr23071 2 26092048 to 26092059 11 - TSS region transcription start site region 23071
Tssr23072 2 26092149 to 26092157 8 - TSS region transcription start site region 23072
Tssr23073 2 26097251 to 26097259 8 - TSS region transcription start site region 23073
Cpgi11338 2 26121804 to 26123438 1634 CpG island CpG island 11338
Tssr23074 2 26122738 to 26122765 27 - TSS region transcription start site region 23074
Tssr23075 2 26122769 to 26122838 69 - TSS region transcription start site region 23075
Cpgi11339 2 26133088 to 26133382 294 CpG island CpG island 11339
Tmem250-ps 2 26136807 to 26140506 3699 - pseudogene transmembrane protein 250, pseudogene
Tssr23076 2 26138276 to 26138278 2 - TSS region transcription start site region 23076
Cpgi11340 2 26138470 to 26139077 607 CpG island CpG island 11340
1810012K08Rik 2 26138546 to 26139543 997 + lincRNA gene RIKEN cDNA 1810012K08 gene
Tssr23077 2 26138894 to 26138916 22 - TSS region transcription start site region 23077
Cpgi11341 2 26139455 to 26141117 1662 CpG island CpG island 11341
Tssr23078 2 26140289 to 26140344 55 - TSS region transcription start site region 23078
Tssr23079 2 26140348 to 26140389 41 - TSS region transcription start site region 23079
Tssr23080 2 26140468 to 26140530 62 - TSS region transcription start site region 23080
Tssr23081 2 26140532 to 26140554 22 - TSS region transcription start site region 23081
Tssr16778 2 26154311 to 26154317 6 + TSS region transcription start site region 16778
Gm35745 2 26174761 to 26178580 3819 - lncRNA gene predicted gene, 35745
Gm13553 2 26186729 to 26191678 4949 - lincRNA gene predicted gene 13553
Lhx3 2 26200212 to 26208249 8037 - protein coding gene LIM homeobox protein 3
Cpgi11342 2 26201884 to 26203397 1513 CpG island CpG island 11342
Tssr23082 2 26204577 to 26204590 13 - TSS region transcription start site region 23082
Tssr23083 2 26204611 to 26204622 11 - TSS region transcription start site region 23083
Tssr23084 2 26204625 to 26204636 11 - TSS region transcription start site region 23084
Tssr436 2 26204644 to 26204648 4 - TSS region transcription start site region 436
Tssr23085 2 26204656 to 26204661 5 - TSS region transcription start site region 23085
Cpgi11343 2 26205209 to 26205449 240 CpG island CpG island 11343
Cpgi11344 2 26206070 to 26207102 1032 CpG island CpG island 11344
Tssr23086 2 26206535 to 26206580 45 - TSS region transcription start site region 23086
Tssr16779 2 26206675 to 26206686 11 + TSS region transcription start site region 16779
Gm27196 2 26206702 to 26209283 2581 + antisense lncRNA gene predicted gene 27196
Tssr23087 2 26208281 to 26208293 12 - TSS region transcription start site region 23087
Qsox2 2 26209124 to 26237399 28275 - protein coding gene quiescin Q6 sulfhydryl oxidase 2
Cpgi11345 2 26236675 to 26237666 991 CpG island CpG island 11345
Tssr23088 2 26237348 to 26237367 19 - TSS region transcription start site region 23088
Tssr23089 2 26237368 to 26237386 18 - TSS region transcription start site region 23089
Ccdc187 2 26243469 to 26294557 51088 - protein coding gene coiled-coil domain containing 187
Tssr16780 2 26267332 to 26267333 1 + TSS region transcription start site region 16780
Tssr16781 2 26278704 to 26278709 5 + TSS region transcription start site region 16781
Gm35807 2 26293958 to 26302044 8086 + lncRNA gene predicted gene, 35807
Tssr23090 2 26294511 to 26294515 4 - TSS region transcription start site region 23090
Tssr23091 2 26294525 to 26294534 9 - TSS region transcription start site region 23091
Tssr23092 2 26294550 to 26294561 11 - TSS region transcription start site region 23092
Tssr23093 2 26294579 to 26294588 9 - TSS region transcription start site region 23093
Tssr23094 2 26294598 to 26294625 27 - TSS region transcription start site region 23094
Tssr16782 2 26294706 to 26294723 17 + TSS region transcription start site region 16782
Tssr16783 2 26294726 to 26294740 14 + TSS region transcription start site region 16783
Tssr23095 2 26300157 to 26300190 33 - TSS region transcription start site region 23095
Tssr23096 2 26300191 to 26300206 15 - TSS region transcription start site region 23096
Cpgi11346 2 26315128 to 26316424 1296 CpG island CpG island 11346
Tssr16784 2 26315459 to 26315466 7 + TSS region transcription start site region 16784
Tssr16785 2 26315483 to 26315502 19 + TSS region transcription start site region 16785
Tssr16786 2 26315513 to 26315602 89 + TSS region transcription start site region 16786
Gpsm1 2 26315515 to 26348237 32722 + protein coding gene G-protein signalling modulator 1 (AGS3-like, C. elegans)
Tssr16787 2 26319741 to 26319757 16 + TSS region transcription start site region 16787
Tssr16788 2 26330426 to 26330441 15 + TSS region transcription start site region 16788
Tssr16789 2 26339425 to 26339451 26 + TSS region transcription start site region 16789
Tssr16790 2 26342282 to 26342295 13 + TSS region transcription start site region 16790
Dnlz 2 26348121 to 26352110 3989 - protein coding gene DNL-type zinc finger
Cpgi11347 2 26351325 to 26352970 1645 CpG island CpG island 11347
Tssr23097 2 26351987 to 26352053 66 - TSS region transcription start site region 23097
Tssr23098 2 26352067 to 26352115 48 - TSS region transcription start site region 23098
Card9 2 26352176 to 26360918 8742 - protein coding gene caspase recruitment domain family, member 9
Tssr23099 2 26352234 to 26352237 3 - TSS region transcription start site region 23099
Gm13562 2 26352645 to 26371952 19307 + unclassified non-coding RNA gene predicted gene 13562
Tssr23100 2 26356838 to 26356905 67 - TSS region transcription start site region 23100
Tssr23101 2 26360843 to 26360872 29 - TSS region transcription start site region 23101
Tssr23102 2 26360873 to 26360914 41 - TSS region transcription start site region 23102
Snapc4 2 26362765 to 26380653 17888 - protein coding gene small nuclear RNA activating complex, polypeptide 4
Cpgi11348 2 26380194 to 26380818 624 CpG island CpG island 11348
Tssr23103 2 26380600 to 26380654 54 - TSS region transcription start site region 23103
Tssr16791 2 26380696 to 26380735 39 + TSS region transcription start site region 16791
Gm13563 2 26381526 to 26389018 7492 + antisense lncRNA gene predicted gene 13563
Entr1 2 26382802 to 26389316 6514 - protein coding gene endosome associated trafficking regulator 1
9430022A06Rik 2 26383357 to 26385155 1798 unclassified gene RIKEN cDNA 9430022A06 gene
Cpgi11349 2 26388475 to 26389794 1319 CpG island CpG island 11349
Tssr23104 2 26389267 to 26389323 56 - TSS region transcription start site region 23104
Tssr16792 2 26389334 to 26389364 30 + TSS region transcription start site region 16792
Pmpca 2 26389348 to 26397121 7773 + protein coding gene peptidase (mitochondrial processing) alpha
Tssr16793 2 26389370 to 26389381 11 + TSS region transcription start site region 16793
Inpp5e 2 26396249 to 26409203 12954 - protein coding gene inositol polyphosphate-5-phosphatase E
Cpgi11350 2 26408554 to 26409598 1044 CpG island CpG island 11350
Tssr23105 2 26409100 to 26409133 33 - TSS region transcription start site region 23105
Tssr23106 2 26409161 to 26409209 48 - TSS region transcription start site region 23106
Tssr23107 2 26409213 to 26409236 23 - TSS region transcription start site region 23107
Sec16a 2 26409431 to 26445216 35785 - protein coding gene SEC16 homolog A, endoplasmic reticulum export factor
Tssr23108 2 26438635 to 26438640 5 - TSS region transcription start site region 23108
Tssr23109 2 26440968 to 26440971 3 - TSS region transcription start site region 23109
Cpgi11351 2 26444730 to 26446430 1700 CpG island CpG island 11351
Tssr23110 2 26445110 to 26445116 6 - TSS region transcription start site region 23110
Tssr23111 2 26445175 to 26445226 51 - TSS region transcription start site region 23111
0610009E02Rik 2 26445605 to 26457995 12390 + unclassified non-coding RNA gene RIKEN cDNA 0610009E02 gene
Tssr23112 2 26445837 to 26445852 15 - TSS region transcription start site region 23112
Tssr23113 2 26445880 to 26445896 16 - TSS region transcription start site region 23113
Tssr16794 2 26445894 to 26445951 57 + TSS region transcription start site region 16794
Tssr16795 2 26446021 to 26446033 12 + TSS region transcription start site region 16795
Tssr16796 2 26454964 to 26454965 1 + TSS region transcription start site region 16796
Gm13568 2 26457144 to 26458316 1172 + unclassified non-coding RNA gene predicted gene 13568
Notch1 2 26457902 to 26503822 45920 - protein coding gene notch 1
Tssr23114 2 26463753 to 26463766 13 - TSS region transcription start site region 23114
Mir6996 2 26470059 to 26470119 60 - miRNA gene microRNA 6996
Tssr16797 2 26475314 to 26475323 9 + TSS region transcription start site region 16797
Tssr23115 2 26476116 to 26476128 12 - TSS region transcription start site region 23115
Tssr23116 2 26476130 to 26476165 35 - TSS region transcription start site region 23116
Tssr23117 2 26476170 to 26476180 10 - TSS region transcription start site region 23117
Tssr437 2 26476449 to 26476490 41 + TSS region transcription start site region 437
Insq7 2 26494434 to 26494563 129 QTL insulin QTL 7
Amzn4 2 26494434 to 26494563 129 QTL anatomical modifier of Zfp423 4
D2Mit151 2 26494434 to 26494563 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 151
Tssr16798 2 26498413 to 26498455 42 + TSS region transcription start site region 16798
Tssr16799 2 26501873 to 26501876 3 + TSS region transcription start site region 16799
Tssr23118 2 26502201 to 26502220 19 - TSS region transcription start site region 23118
Cpgi11352 2 26502210 to 26504601 2391 CpG island CpG island 11352
Tssr23119 2 26502814 to 26502823 9 - TSS region transcription start site region 23119
Tssr23120 2 26503632 to 26503641 9 - TSS region transcription start site region 23120
Tssr23121 2 26503664 to 26503669 5 - TSS region transcription start site region 23121
Tssr23122 2 26503789 to 26503800 11 - TSS region transcription start site region 23122
Tssr23123 2 26503814 to 26503836 22 - TSS region transcription start site region 23123
Gm35978 2 26503927 to 26505347 1420 + lncRNA gene predicted gene, 35978
Tssr23124 2 26505336 to 26505340 4 - TSS region transcription start site region 23124
Tssr16800 2 26516028 to 26516039 11 + TSS region transcription start site region 16800
Tssr23125 2 26516379 to 26516383 4 - TSS region transcription start site region 23125
Cpgi11353 2 26516450 to 26516680 230 CpG island CpG island 11353
Tssr23126 2 26516620 to 26516635 15 - TSS region transcription start site region 23126
Tssr23127 2 26516729 to 26516741 12 - TSS region transcription start site region 23127
Gm36171 2 26547417 to 26555171 7754 - lncRNA gene predicted gene, 36171
Tssr23128 2 26556339 to 26556388 49 - TSS region transcription start site region 23128
Gm13358 2 26558625 to 26559193 568 + pseudogene predicted gene 13358
Tssr16801 2 26576077 to 26576107 30 + TSS region transcription start site region 16801
Tssr16802 2 26581011 to 26581023 12 + TSS region transcription start site region 16802
Tssr16803 2 26581024 to 26581039 15 + TSS region transcription start site region 16803
Tssr16804 2 26581050 to 26581061 11 + TSS region transcription start site region 16804
Egfl7 2 26581056 to 26592682 11626 + protein coding gene EGF-like domain 7
Tssr16805 2 26581066 to 26581069 3 + TSS region transcription start site region 16805
Tssr16806 2 26581077 to 26581093 16 + TSS region transcription start site region 16806
Tssr16807 2 26581122 to 26581135 13 + TSS region transcription start site region 16807
Tssr16808 2 26583858 to 26583874 16 + TSS region transcription start site region 16808
Cpgi11354 2 26586041 to 26587271 1230 CpG island CpG island 11354
Tssr16809 2 26586607 to 26586664 57 + TSS region transcription start site region 16809
Gm20532 2 26586639 to 26635634 48995 + protein coding gene predicted gene 20532
Mir126a 2 26591357 to 26591429 72 + miRNA gene microRNA 126a
Mir126b 2 26591363 to 26591420 57 - miRNA gene microRNA 126b