Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:25090043-25360071

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Noxa1 2 25085667 to 25095149 9482 - protein coding gene NADPH oxidase activator 1
Cpgi11293 2 25094736 to 25094982 246 CpG island CpG island 11293
Tssr22934 2 25095080 to 25095092 12 - TSS region transcription start site region 22934
Tssr22935 2 25095095 to 25095110 15 - TSS region transcription start site region 22935
Tssr22936 2 25095125 to 25095138 13 - TSS region transcription start site region 22936
Tssr22937 2 25095152 to 25095169 17 - TSS region transcription start site region 22937
Gm13387 2 25122603 to 25145396 22793 - lincRNA gene predicted gene 13387
Cpgi11294 2 25167922 to 25168445 523 CpG island CpG island 11294
Cpgi11295 2 25180372 to 25182057 1685 CpG island CpG island 11295
Tssr16660 2 25180737 to 25180764 27 + TSS region transcription start site region 16660
Nrarp 2 25180758 to 25183339 2581 + protein coding gene Notch-regulated ankyrin repeat protein
Gm38287 2 25180781 to 25183339 2558 - antisense lncRNA gene predicted gene, 38287
Cpgi11296 2 25185577 to 25186517 940 CpG island CpG island 11296
Tor4a 2 25192966 to 25196886 3920 - protein coding gene torsin family 4, member A
Tssr16661 2 25194806 to 25194820 14 + TSS region transcription start site region 16661
Cpgi11297 2 25194849 to 25195980 1131 CpG island CpG island 11297
Tssr22938 2 25196579 to 25196604 25 - TSS region transcription start site region 22938
Tssr22939 2 25196607 to 25196640 33 - TSS region transcription start site region 22939
Tssr22940 2 25196708 to 25196715 7 - TSS region transcription start site region 22940
Tssr22941 2 25196742 to 25196755 13 - TSS region transcription start site region 22941
Tssr22942 2 25196759 to 25196823 64 - TSS region transcription start site region 22942
Nelfb 2 25199712 to 25211489 11777 - protein coding gene negative elongation factor complex member B
Gm22572 2 25208623 to 25208727 104 + snRNA gene predicted gene, 22572
Cpgi11298 2 25210708 to 25211653 945 CpG island CpG island 11298
Tssr22943 2 25211344 to 25211357 13 - TSS region transcription start site region 22943
Tssr22944 2 25211367 to 25211436 69 - TSS region transcription start site region 22944
Stpg3 2 25212207 to 25214637 2430 - protein coding gene sperm tail PG rich repeat containing 3
Cpgi11299 2 25213308 to 25213697 389 CpG island CpG island 11299
Tssr22945 2 25214581 to 25214608 27 - TSS region transcription start site region 22945
Tssr22946 2 25214616 to 25214623 7 - TSS region transcription start site region 22946
Tssr22947 2 25214628 to 25214633 5 - TSS region transcription start site region 22947
Tssr16662 2 25214691 to 25214700 9 + TSS region transcription start site region 16662
Tssr16663 2 25214706 to 25214755 49 + TSS region transcription start site region 16663
Tssr22948 2 25218647 to 25218674 27 - TSS region transcription start site region 22948
Tssr16664 2 25218741 to 25218750 9 + TSS region transcription start site region 16664
Fam166a 2 25218745 to 25222280 3535 + protein coding gene family with sequence similarity 166, member A
Tssr16665 2 25218752 to 25218799 47 + TSS region transcription start site region 16665
Tubb4b 2 25222160 to 25224702 2542 - protein coding gene tubulin, beta 4B class IVB
Cpgi11300 2 25223768 to 25225274 1506 CpG island CpG island 11300
Tssr22949 2 25224230 to 25224268 38 - TSS region transcription start site region 22949
Tssr22950 2 25224653 to 25224659 6 - TSS region transcription start site region 22950
Tssr16666 2 25225043 to 25225071 28 + TSS region transcription start site region 16666
Tssr16667 2 25225363 to 25225375 12 + TSS region transcription start site region 16667
Tssr16668 2 25225416 to 25225431 15 + TSS region transcription start site region 16668
Tssr22951 2 25228420 to 25228459 39 - TSS region transcription start site region 22951
Slc34a3 2 25228897 to 25234271 5374 - protein coding gene solute carrier family 34 (sodium phosphate), member 3
Tssr22952 2 25234177 to 25234192 15 - TSS region transcription start site region 22952
Tssr22953 2 25234203 to 25234223 20 - TSS region transcription start site region 22953
Tssr22954 2 25234227 to 25234251 24 - TSS region transcription start site region 22954
Rnf224 2 25234476 to 25236787 2311 - protein coding gene ring finger protein 224
Cysrt1 2 25238819 to 25239897 1078 - protein coding gene cysteine rich tail 1
Tssr22955 2 25239850 to 25239870 20 - TSS region transcription start site region 22955
Cpgi11301 2 25240769 to 25241137 368 CpG island CpG island 11301
Tssr16669 2 25241579 to 25241596 17 + TSS region transcription start site region 16669
Cpgi11302 2 25241664 to 25243085 1421 CpG island CpG island 11302
Tssr16670 2 25241903 to 25241926 23 + TSS region transcription start site region 16670
Tssr16671 2 25242196 to 25242207 11 + TSS region transcription start site region 16671
Tssr16672 2 25242227 to 25242284 57 + TSS region transcription start site region 16672
Tssr16673 2 25242285 to 25242379 94 + TSS region transcription start site region 16673
Tssr16674 2 25242397 to 25242408 11 + TSS region transcription start site region 16674
Rnf208 2 25242929 to 25244261 1332 + protein coding gene ring finger protein 208
Tssr16675 2 25243059 to 25243087 28 + TSS region transcription start site region 16675
Tssr16676 2 25243238 to 25243249 11 + TSS region transcription start site region 16676
Ndor1 2 25244813 to 25255443 10630 - protein coding gene NADPH dependent diflavin oxidoreductase 1
Tssr22956 2 25246841 to 25246864 23 - TSS region transcription start site region 22956
Cpgi11303 2 25255080 to 25256081 1001 CpG island CpG island 11303
Tssr22957 2 25255348 to 25255397 49 - TSS region transcription start site region 22957
Tmem203 2 25255439 to 25256292 853 + protein coding gene transmembrane protein 203
Tssr16677 2 25255439 to 25255486 47 + TSS region transcription start site region 16677
Tssr16678 2 25255665 to 25255685 20 + TSS region transcription start site region 16678
Cpgi11304 2 25262263 to 25263942 1679 CpG island CpG island 11304
Tssr16679 2 25262534 to 25262543 9 + TSS region transcription start site region 16679
Tssr16680 2 25262556 to 25262563 7 + TSS region transcription start site region 16680
Tssr16681 2 25262589 to 25262670 81 + TSS region transcription start site region 16681
Tprn 2 25262618 to 25269885 7267 + protein coding gene taperin
Tssr16682 2 25263199 to 25263210 11 + TSS region transcription start site region 16682
Tssr16683 2 25263212 to 25263219 7 + TSS region transcription start site region 16683
Tssr16684 2 25263292 to 25263347 55 + TSS region transcription start site region 16684
Tssr16685 2 25263359 to 25263368 9 + TSS region transcription start site region 16685
Tssr16686 2 25263372 to 25263381 9 + TSS region transcription start site region 16686
Tssr16687 2 25263919 to 25263931 12 + TSS region transcription start site region 16687
Tssr16688 2 25264270 to 25264290 20 + TSS region transcription start site region 16688
Tssr16689 2 25264304 to 25264313 9 + TSS region transcription start site region 16689
Tssr16690 2 25265557 to 25265558 1 + TSS region transcription start site region 16690
Ssna1 2 25271039 to 25272418 1379 - protein coding gene SS nuclear autoantigen 1
Cpgi11305 2 25271716 to 25273214 1498 CpG island CpG island 11305
Tssr22958 2 25272336 to 25272376 40 - TSS region transcription start site region 22958
Tssr22959 2 25272380 to 25272421 41 - TSS region transcription start site region 22959
Tssr16691 2 25272462 to 25272473 11 + TSS region transcription start site region 16691
Tssr16692 2 25272475 to 25272486 11 + TSS region transcription start site region 16692
Anapc2 2 25272478 to 25285915 13437 + protein coding gene anaphase promoting complex subunit 2
Tssr16693 2 25272487 to 25272517 30 + TSS region transcription start site region 16693
Tssr22960 2 25288053 to 25288073 20 - TSS region transcription start site region 22960
Tssr16694 2 25288135 to 25288150 15 + TSS region transcription start site region 16694
Tmem210 2 25288145 to 25289187 1042 + protein coding gene transmembrane protein 210
Tssr16695 2 25288167 to 25288175 8 + TSS region transcription start site region 16695
Cpgi11306 2 25289821 to 25291321 1500 CpG island CpG island 11306
Tssr16696 2 25289899 to 25289935 36 + TSS region transcription start site region 16696
Lrrc26 2 25289915 to 25291180 1265 + protein coding gene leucine rich repeat containing 26
Tssr430 2 25289951 to 25289961 10 + TSS region transcription start site region 430
Grin1 2 25291181 to 25319187 28006 - protein coding gene glutamate receptor, ionotropic, NMDA1 (zeta 1)
Grin1os 2 25291220 to 25298925 7705 + antisense lncRNA gene glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand
Tssr22961 2 25291666 to 25291682 16 - TSS region transcription start site region 22961
Tssr22962 2 25291779 to 25291790 11 - TSS region transcription start site region 22962
Cpgi11307 2 25291949 to 25292487 538 CpG island CpG island 11307
D2Bwg0161e 2 25301179 to 25301329 150 DNA segment DNA segment, Chr 2, Brigham & Women's Genetics 0161 expressed
Cpgi11308 2 25305007 to 25305556 549 CpG island CpG island 11308
Tssr22963 2 25305127 to 25305146 19 - TSS region transcription start site region 22963
Cpgi11309 2 25311039 to 25311559 520 CpG island CpG island 11309
Tssr22964 2 25311503 to 25311529 26 - TSS region transcription start site region 22964
Tssr22965 2 25316856 to 25316867 11 - TSS region transcription start site region 22965
Tssr22966 2 25316879 to 25316892 13 - TSS region transcription start site region 22966
Cpgi11310 2 25318185 to 25319573 1388 CpG island CpG island 11310
Tssr22967 2 25319109 to 25319170 61 - TSS region transcription start site region 22967
Tssr22968 2 25319193 to 25319204 11 - TSS region transcription start site region 22968
AA543186 2 25327450 to 25332571 5121 - lincRNA gene expressed sequence AA543186
Cpgi11311 2 25332057 to 25333321 1264 CpG island CpG island 11311
Tssr16697 2 25332222 to 25332247 25 + TSS region transcription start site region 16697
Tssr22969 2 25332481 to 25332495 14 - TSS region transcription start site region 22969
Tssr22970 2 25332524 to 25332602 78 - TSS region transcription start site region 22970
Tssr16698 2 25332732 to 25332782 50 + TSS region transcription start site region 16698
Man1b1 2 25332743 to 25352213 19470 + protein coding gene mannosidase, alpha, class 1B, member 1
Tssr16699 2 25332795 to 25332813 18 + TSS region transcription start site region 16699
Gm25220 2 25339651 to 25339745 94 + snRNA gene predicted gene, 25220
Tssr16700 2 25341715 to 25341719 4 + TSS region transcription start site region 16700
Tssr16701 2 25346274 to 25346281 7 + TSS region transcription start site region 16701
Pcfm1 2 25346284 to 25346384 100 QTL periosteal circumference and femur length 1
D2Mit32 2 25346284 to 25346384 100 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 32
Dpp7 2 25352276 to 25356359 4083 - protein coding gene dipeptidylpeptidase 7
Tssr22971 2 25356311 to 25356318 7 - TSS region transcription start site region 22971
Tssr22972 2 25356319 to 25356366 47 - TSS region transcription start site region 22972
Tssr16702 2 25356447 to 25356476 29 + TSS region transcription start site region 16702
Gm46732 2 25357507 to 25358001 494 + lncRNA gene predicted gene, 46732