Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:24940296-25220310

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11289 2 24949165 to 24950614 1449 CpG island CpG island 11289
Tssr16633 2 24949747 to 24949801 54 + TSS region transcription start site region 16633
Zmynd19 2 24949777 to 24960870 11093 + protein coding gene zinc finger, MYND domain containing 19
Cpgi11290 2 24962243 to 24962740 497 CpG island CpG island 11290
Dph7 2 24962400 to 24972163 9763 + protein coding gene diphthamine biosynethesis 7
Tssr16634 2 24962418 to 24962473 55 + TSS region transcription start site region 16634
Mrpl41 2 24974117 to 24975098 981 - protein coding gene mitochondrial ribosomal protein L41
Cpgi11291 2 24974612 to 24975958 1346 CpG island CpG island 11291
Tssr22928 2 24974991 to 24975071 80 - TSS region transcription start site region 22928
Tssr22929 2 24975084 to 24975095 11 - TSS region transcription start site region 22929
Tssr16635 2 24975191 to 24975219 28 + TSS region transcription start site region 16635
Tssr16636 2 24975223 to 24975236 13 + TSS region transcription start site region 16636
Tssr16637 2 24975308 to 24975320 12 + TSS region transcription start site region 16637
Tssr16638 2 24975336 to 24975346 10 + TSS region transcription start site region 16638
Tssr22930 2 24975831 to 24975839 8 - TSS region transcription start site region 22930
Tssr22931 2 24975849 to 24975857 8 - TSS region transcription start site region 22931
Tssr22932 2 24975878 to 24975894 16 - TSS region transcription start site region 22932
Tssr16639 2 24976027 to 24976043 16 + TSS region transcription start site region 16639
Pnpla7 2 24976033 to 25054057 78024 + protein coding gene patatin-like phospholipase domain containing 7
Tssr16640 2 24976046 to 24976110 64 + TSS region transcription start site region 16640
Tssr16641 2 24976117 to 24976140 23 + TSS region transcription start site region 16641
Tssr16642 2 24976180 to 24976192 12 + TSS region transcription start site region 16642
Tssr16643 2 24977921 to 24977931 10 + TSS region transcription start site region 16643
Tssr16644 2 24983676 to 24983685 9 + TSS region transcription start site region 16644
Gm13370 2 24985984 to 24986466 482 + pseudogene predicted gene 13370
Tssr16645 2 24992632 to 24992651 19 + TSS region transcription start site region 16645
Gm13369 2 24993357 to 24994343 986 - pseudogene predicted gene 13369
Tssr16646 2 24994385 to 24994394 9 + TSS region transcription start site region 16646
Gm25518 2 25006152 to 25006258 106 - snRNA gene predicted gene, 25518
Tssr16647 2 25025610 to 25025615 5 + TSS region transcription start site region 16647
Gm24875 2 25031350 to 25031453 103 - snRNA gene predicted gene, 24875
Tssr428 2 25047971 to 25047982 11 + TSS region transcription start site region 428
Tssr16648 2 25051642 to 25051684 42 + TSS region transcription start site region 16648
Cpgi11292 2 25054194 to 25055023 829 CpG island CpG island 11292
Nsmf 2 25054370 to 25062881 8511 + protein coding gene NMDA receptor synaptonuclear signaling and neuronal migration factor
Tssr16649 2 25054374 to 25054391 17 + TSS region transcription start site region 16649
Tssr16650 2 25054396 to 25054440 44 + TSS region transcription start site region 16650
Tssr16651 2 25054445 to 25054456 11 + TSS region transcription start site region 16651
Tssr16652 2 25054472 to 25054483 11 + TSS region transcription start site region 16652
Tssr16653 2 25054497 to 25054529 32 + TSS region transcription start site region 16653
Gm24328 2 25055109 to 25055175 66 - miRNA gene predicted gene, 24328
Mir7664 2 25059811 to 25059873 62 + miRNA gene microRNA 7664
Tssr16654 2 25062719 to 25062728 9 + TSS region transcription start site region 16654
Tssr16655 2 25062811 to 25062825 14 + TSS region transcription start site region 16655
Gm39770 2 25070376 to 25072673 2297 - lncRNA gene predicted gene, 39770
Tssr429 2 25079177 to 25079198 21 + TSS region transcription start site region 429
Tssr22933 2 25080208 to 25080239 31 - TSS region transcription start site region 22933
Tssr16656 2 25080296 to 25080310 14 + TSS region transcription start site region 16656
Entpd8 2 25080304 to 25085716 5412 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 8
Tssr16657 2 25080316 to 25080343 27 + TSS region transcription start site region 16657
Tssr16658 2 25080481 to 25080492 11 + TSS region transcription start site region 16658
Tssr16659 2 25080497 to 25080530 33 + TSS region transcription start site region 16659
Noxa1 2 25085667 to 25095149 9482 - protein coding gene NADPH oxidase activator 1
Cpgi11293 2 25094736 to 25094982 246 CpG island CpG island 11293
Tssr22934 2 25095080 to 25095092 12 - TSS region transcription start site region 22934
Tssr22935 2 25095095 to 25095110 15 - TSS region transcription start site region 22935
Tssr22936 2 25095125 to 25095138 13 - TSS region transcription start site region 22936
Tssr22937 2 25095152 to 25095169 17 - TSS region transcription start site region 22937
Gm13387 2 25122603 to 25145396 22793 - lincRNA gene predicted gene 13387
Cpgi11294 2 25167922 to 25168445 523 CpG island CpG island 11294
Cpgi11295 2 25180372 to 25182057 1685 CpG island CpG island 11295
Tssr16660 2 25180737 to 25180764 27 + TSS region transcription start site region 16660
Nrarp 2 25180758 to 25183339 2581 + protein coding gene Notch-regulated ankyrin repeat protein
Gm38287 2 25180781 to 25183339 2558 - antisense lncRNA gene predicted gene, 38287
Cpgi11296 2 25185577 to 25186517 940 CpG island CpG island 11296
Tor4a 2 25192966 to 25196886 3920 - protein coding gene torsin family 4, member A
Tssr16661 2 25194806 to 25194820 14 + TSS region transcription start site region 16661
Cpgi11297 2 25194849 to 25195980 1131 CpG island CpG island 11297
Tssr22938 2 25196579 to 25196604 25 - TSS region transcription start site region 22938
Tssr22939 2 25196607 to 25196640 33 - TSS region transcription start site region 22939
Tssr22940 2 25196708 to 25196715 7 - TSS region transcription start site region 22940
Tssr22941 2 25196742 to 25196755 13 - TSS region transcription start site region 22941
Tssr22942 2 25196759 to 25196823 64 - TSS region transcription start site region 22942
Nelfb 2 25199712 to 25211489 11777 - protein coding gene negative elongation factor complex member B
Gm22572 2 25208623 to 25208727 104 + snRNA gene predicted gene, 22572
Cpgi11298 2 25210708 to 25211653 945 CpG island CpG island 11298
Tssr22943 2 25211344 to 25211357 13 - TSS region transcription start site region 22943
Tssr22944 2 25211367 to 25211436 69 - TSS region transcription start site region 22944
Stpg3 2 25212207 to 25214637 2430 - protein coding gene sperm tail PG rich repeat containing 3
Cpgi11299 2 25213308 to 25213697 389 CpG island CpG island 11299
Tssr22945 2 25214581 to 25214608 27 - TSS region transcription start site region 22945
Tssr22946 2 25214616 to 25214623 7 - TSS region transcription start site region 22946
Tssr22947 2 25214628 to 25214633 5 - TSS region transcription start site region 22947
Tssr16662 2 25214691 to 25214700 9 + TSS region transcription start site region 16662
Tssr16663 2 25214706 to 25214755 49 + TSS region transcription start site region 16663
Tssr22948 2 25218647 to 25218674 27 - TSS region transcription start site region 22948
Tssr16664 2 25218741 to 25218750 9 + TSS region transcription start site region 16664
Fam166a 2 25218745 to 25222280 3535 + protein coding gene family with sequence similarity 166, member A
Tssr16665 2 25218752 to 25218799 47 + TSS region transcription start site region 16665