Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:160669245-170052882

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1814 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ltpr2 2 103265371 to 167370436 64105065 QTL Leishmania tropica response 2
Pwgrq2 2 118758772 to 160769245 42010473 QTL pre-weaning growth rate QTL 2
Pwbwq1 2 118758772 to 160769245 42010473 QTL pre-weaning body weight QTL 1
Pwbwq5 2 118758772 to 160769245 42010473 QTL post-weaning body weight QTL 5
Pwgrq1 2 118758772 to 160769245 42010473 QTL pre-weaning growth rate QTL 1
Bsbob 2 143931525 to 165823099 21891574 QTL BSB obesity
Gnf1 2 143931525 to 169276004 25344479 QTL growth and fatness 1
Tailq2 2 151799021 to 162895154 11096133 QTL tail length QTL 2
Hylaq2 2 151799021 to 164277226 12478205 QTL Hyperlocomotor activity related QTL 2
Epfq1 2 151799021 to 162895154 11096133 QTL epididymal fat pad weight QTL 1
Scfq1 2 151799021 to 162895154 11096133 QTL subcutaneous fat pad weight QTL 1
Gnf3 2 152857301 to 169276004 16418703 QTL growth and fatness 3
Gnf2 2 152857301 to 162355165 9497864 QTL growth and fatness 2
Top1 2 160645897 to 160722764 76867 + protein coding gene topoisomerase (DNA) I
Tssr21394 2 160670119 to 160670172 53 + TSS region transcription start site region 21394
Tssr21395 2 160670174 to 160670182 8 + TSS region transcription start site region 21395
D2Mit143 2 160671690 to 160671788 98 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 143
Tssr27246 2 160682722 to 160682780 58 - TSS region transcription start site region 27246
Tssr21396 2 160687670 to 160687700 30 + TSS region transcription start site region 21396
Tssr21397 2 160698170 to 160698197 27 + TSS region transcription start site region 21397
Tssr21398 2 160699607 to 160699611 4 + TSS region transcription start site region 21398
Cpgi12610 2 160730625 to 160732443 1818 CpG island CpG island 12610
Tssr21399 2 160731258 to 160731300 42 + TSS region transcription start site region 21399
Plcg1 2 160731310 to 160775760 44450 + protein coding gene phospholipase C, gamma 1
Tssr21400 2 160731684 to 160731760 76 + TSS region transcription start site region 21400
Tssr21401 2 160731776 to 160731796 20 + TSS region transcription start site region 21401
Tssr21402 2 160732635 to 160732638 3 + TSS region transcription start site region 21402
Tssr21403 2 160740991 to 160740998 7 + TSS region transcription start site region 21403
Gm27206 2 160743927 to 160751909 7982 - antisense lncRNA gene predicted gene 27206
Tssr21404 2 160747329 to 160747341 12 + TSS region transcription start site region 21404
Tssr21405 2 160747372 to 160747387 15 + TSS region transcription start site region 21405
Tssr21406 2 160757156 to 160757166 10 + TSS region transcription start site region 21406
Pwgrq3 2 160769245 to 169952882 9183637 QTL pre-weaning growth rate QTL 3
Pwbwq2 2 160769245 to 169952882 9183637 QTL pre-weaning body weight QTL 2
Tssr27247 2 160769954 to 160769957 3 - TSS region transcription start site region 27247
Zhx3 2 160770447 to 160872990 102543 - protein coding gene zinc fingers and homeoboxes 3
Tssr21407 2 160797166 to 160797176 10 + TSS region transcription start site region 21407
Tssr27248 2 160816669 to 160816674 5 - TSS region transcription start site region 27248
Gm16751 2 160840836 to 160888028 47192 - antisense lncRNA gene predicted gene, 16751
Gm11447 2 160845613 to 160846470 857 + pseudogene predicted gene 11447
Tssr27249 2 160859601 to 160859630 29 - TSS region transcription start site region 27249
Tssr27250 2 160859632 to 160859639 7 - TSS region transcription start site region 27250
Tssr27251 2 160860235 to 160860239 4 - TSS region transcription start site region 27251
Cpgi12611 2 160871998 to 160873397 1399 CpG island CpG island 12611
Tssr27252 2 160872552 to 160872622 70 - TSS region transcription start site region 27252
Tssr27253 2 160872932 to 160872943 11 - TSS region transcription start site region 27253
Tssr27254 2 160872945 to 160872972 27 - TSS region transcription start site region 27254
Tssr27255 2 160872985 to 160873009 24 - TSS region transcription start site region 27255
Gm35129 2 160873152 to 160879549 6397 + lncRNA gene predicted gene, 35129
Tssr27256 2 160874398 to 160874424 26 - TSS region transcription start site region 27256
Tssr21408 2 160880642 to 160880650 8 + TSS region transcription start site region 21408
Lpin3 2 160880670 to 160906000 25330 + protein coding gene lipin 3
Tssr21409 2 160880698 to 160880726 28 + TSS region transcription start site region 21409
Tssr21410 2 160880728 to 160880747 19 + TSS region transcription start site region 21410
Cpgi12612 2 160887448 to 160888277 829 CpG island CpG island 12612
Tssr27257 2 160888035 to 160888043 8 - TSS region transcription start site region 27257
Tssr21411 2 160888101 to 160888113 12 + TSS region transcription start site region 21411
Tssr21412 2 160888156 to 160888199 43 + TSS region transcription start site region 21412
Tssr21413 2 160891973 to 160891999 26 + TSS region transcription start site region 21413
Emilin3 2 160906437 to 160912328 5891 - protein coding gene elastin microfibril interfacer 3
Cpgi12613 2 160911503 to 160912868 1365 CpG island CpG island 12613
Tssr27258 2 160912292 to 160912344 52 - TSS region transcription start site region 27258
Tssr27259 2 160912349 to 160912355 6 - TSS region transcription start site region 27259
Gm35181 2 160912610 to 160925695 13085 + lncRNA gene predicted gene, 35181
Gm14228 2 160925541 to 160926648 1107 - lincRNA gene predicted gene 14228
Chd6 2 160946978 to 161109075 162097 - protein coding gene chromodomain helicase DNA binding protein 6
Tssr27260 2 160950666 to 160950670 4 - TSS region transcription start site region 27260
Tssr27261 2 160961371 to 160961380 9 - TSS region transcription start site region 27261
Tssr27262 2 160981676 to 160981687 11 - TSS region transcription start site region 27262
Tssr27263 2 160982698 to 160982709 11 - TSS region transcription start site region 27263
Tssr27264 2 160982718 to 160982730 12 - TSS region transcription start site region 27264
Tssr27265 2 160982737 to 160982764 27 - TSS region transcription start site region 27265
Tssr27266 2 160989303 to 160989305 2 - TSS region transcription start site region 27266
Gm25561 2 160996777 to 160996901 124 + snoRNA gene predicted gene, 25561
Tssr21414 2 161004621 to 161004634 13 + TSS region transcription start site region 21414
Cpgi12614 2 161108108 to 161109796 1688 CpG island CpG island 12614
Tssr27267 2 161109017 to 161109027 10 - TSS region transcription start site region 27267
Tssr27268 2 161109036 to 161109091 55 - TSS region transcription start site region 27268
Tssr27269 2 161109194 to 161109199 5 - TSS region transcription start site region 27269
Gm45447 2 161109411 to 161114858 5447 + antisense lncRNA gene predicted gene 45447
D2Mit509 2 161156924 to 161157073 149 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-509
Gm14243 2 161179064 to 161216577 37513 + lincRNA gene predicted gene 14243
Gm14242 2 161206689 to 161207280 591 - lincRNA gene predicted gene 14242
Gm5270 2 161254456 to 161255457 1001 - pseudogene predicted gene 5270
Gm11448 2 161287220 to 161287669 449 + pseudogene predicted gene 11448
Gm14241 2 161331314 to 161332253 939 + lincRNA gene predicted gene 14241
Cpgi12615 2 161341803 to 161341984 181 CpG island CpG island 12615
Tssr731 2 161354861 to 161354865 4 + TSS region transcription start site region 731
Gm35374 2 161391182 to 161412619 21437 + lncRNA gene predicted gene, 35374
Gm11449 2 161482563 to 161483038 475 - pseudogene predicted gene 11449
Gm29229 2 161513690 to 161514012 322 - unclassified non-coding RNA gene predicted gene 29229
Tssr27270 2 161519863 to 161519867 4 - TSS region transcription start site region 27270
Ptprt 2 161521990 to 162661147 1139157 - protein coding gene protein tyrosine phosphatase, receptor type, T
Tssr21415 2 161537136 to 161537138 2 + TSS region transcription start site region 21415
D2Mit197 2 161538069 to 161538215 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 197
D2Mit142 2 161591854 to 161591971 117 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 142
D2Mit497 2 161733481 to 161733729 248 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 497
Tssr21416 2 162045298 to 162045299 1 + TSS region transcription start site region 21416
D2Mit310 2 162195537 to 162195674 137 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 310
Tssr732 2 162253176 to 162253177 1 + TSS region transcription start site region 732
D2Mit412 2 162344842 to 162344966 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 412
D2Mit263.3 2 162354946 to 162355057 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 263.3
D2Mit263 2 162355029 to 162355165 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 263
Tbbmd3 2 162355029 to 162355165 136 QTL total body bone mineral density 3
D2Mit452.2 2 162386681 to 162386823 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 452.2
D2Mit452 2 162386799 to 162386921 122 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 452
Aod4 2 162386799 to 162386921 122 QTL autoimmune ovarian dysgenesis 4
Ptprtos 2 162390813 to 162393945 3132 + antisense lncRNA gene protein tyrosine phosphatase, receptor type T, opposite strand
Tssr733 2 162392391 to 162392393 2 + TSS region transcription start site region 733
D2Dcr124 2 162452335 to 162452432 97 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 124
Cpgi12616 2 162485599 to 162485943 344 CpG island CpG island 12616
Gm46774 2 162491060 to 162497812 6752 - lncRNA gene predicted gene, 46774
Tssr27271 2 162644609 to 162644629 20 - TSS region transcription start site region 27271
D2Mit170 2 162654924 to 162655060 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 170
Cpgi12617 2 162660159 to 162661693 1534 CpG island CpG island 12617
Tssr27272 2 162661049 to 162661058 9 - TSS region transcription start site region 27272
Tssr27273 2 162661075 to 162661090 15 - TSS region transcription start site region 27273
9430021M05Rik 2 162661163 to 162667109 5946 + lncRNA gene RIKEN cDNA 9430021M05 gene
Tssr21417 2 162661192 to 162661239 47 + TSS region transcription start site region 21417
Tssr21418 2 162661244 to 162661260 16 + TSS region transcription start site region 21418
Tssr21419 2 162661304 to 162661320 16 + TSS region transcription start site region 21419
Hdlq19 2 162676855 to 162677006 151 QTL HDL QTL 19
D2Mit50 2 162676855 to 162677006 151 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 50
Mobq5 2 162677006 to 65439402 -97237604 QTL multigenic obesity QTL 5
Gm14246 2 162679455 to 162680529 1074 + lincRNA gene predicted gene 14246
Gm22936 2 162757309 to 162757434 125 + snoRNA gene predicted gene, 22936
Gm11450 2 162805590 to 162805922 332 + pseudogene predicted gene 11450
Gm24478 2 162816311 to 162816468 157 - snRNA gene predicted gene, 24478
Gm14255 2 162867079 to 162868194 1115 - lincRNA gene predicted gene 14255
Cpgi12618 2 162888431 to 162888699 268 CpG island CpG island 12618
Tailq4 2 162895006 to 178800659 15905653 QTL tail length QTL 4
Epfq2 2 162895006 to 178800659 15905653 QTL epididymal fat pad weight QTL 2
D2Mit49 2 162895006 to 162895154 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 49
Gm11451 2 162898894 to 162899523 629 - pseudogene predicted gene 11451
Cpgi12619 2 162899361 to 162899603 242 CpG island CpG island 12619
Gm11452 2 162907924 to 162908613 689 + pseudogene predicted gene 11452
Cpgi12620 2 162908307 to 162908595 288 CpG island CpG island 12620
Gm39978 2 162916670 to 162917894 1224 - lncRNA gene predicted gene, 39978
Cisd3b 2 162919088 to 162923267 4179 - protein coding gene CDGSH iron sulfur domain 3B
Tssr27274 2 162924658 to 162924662 4 - TSS region transcription start site region 27274
Cpgi12621 2 162930913 to 162932454 1541 CpG island CpG island 12621
1700007A02Rik 2 162931266 to 162931443 177 unclassified gene RIKEN cDNA 1700007A02 gene
Tssr21420 2 162931520 to 162931536 16 + TSS region transcription start site region 21420
Srsf6 2 162931528 to 162937121 5593 + protein coding gene serine/arginine-rich splicing factor 6
Tssr27275 2 162932427 to 162932462 35 - TSS region transcription start site region 27275
Cpgi12622 2 162943284 to 162943776 492 CpG island CpG island 12622
L3mbtl1 2 162943472 to 162974522 31050 + protein coding gene L3MBTL1 histone methyl-lysine binding protein
Tssr21421 2 162943484 to 162943516 32 + TSS region transcription start site region 21421
Cpgi12623 2 162947780 to 162948344 564 CpG island CpG island 12623
Gm11453 2 162982255 to 162983261 1006 - pseudogene predicted gene 11453
Sgk2 2 162987330 to 163014127 26797 + protein coding gene serum/glucocorticoid regulated kinase 2
Tssr21422 2 162987427 to 162987436 9 + TSS region transcription start site region 21422
Tssr21423 2 162987442 to 162987449 7 + TSS region transcription start site region 21423
Tssr21424 2 162987474 to 162987486 12 + TSS region transcription start site region 21424
Tssr21425 2 162987504 to 162987509 5 + TSS region transcription start site region 21425
Tssr21426 2 162987519 to 162987537 18 + TSS region transcription start site region 21426
Tssr21427 2 162987547 to 162987560 13 + TSS region transcription start site region 21427
Tssr21428 2 162991587 to 162991598 11 + TSS region transcription start site region 21428
Tssr21429 2 163007460 to 163007463 3 + TSS region transcription start site region 21429
Cpgi12624 2 163016940 to 163017756 816 CpG island CpG island 12624
Ift52 2 163017354 to 163046141 28787 + protein coding gene intraflagellar transport 52
Tssr21430 2 163017450 to 163017513 63 + TSS region transcription start site region 21430
Tssr27276 2 163031427 to 163031438 11 - TSS region transcription start site region 27276
Cpgi12625 2 163048117 to 163048308 191 CpG island CpG island 12625
Cpgi12626 2 163054252 to 163055404 1152 CpG island CpG island 12626
Tssr27277 2 163054407 to 163054420 13 - TSS region transcription start site region 27277
Tssr27278 2 163054443 to 163054454 11 - TSS region transcription start site region 27278
Tssr21431 2 163054570 to 163054583 13 + TSS region transcription start site region 21431
Tssr21432 2 163054591 to 163054649 58 + TSS region transcription start site region 21432
Tssr21433 2 163054651 to 163054677 26 + TSS region transcription start site region 21433
Tssr21434 2 163054682 to 163054693 11 + TSS region transcription start site region 21434
Mybl2 2 163054687 to 163084688 30001 + protein coding gene myeloblastosis oncogene-like 2
Tssr21435 2 163059167 to 163059193 26 + TSS region transcription start site region 21435
Tssr21436 2 163059208 to 163059219 11 + TSS region transcription start site region 21436
Tssr21437 2 163059396 to 163059418 22 + TSS region transcription start site region 21437
D2Mit290 2 163060474 to 163060662 188 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 290
D2Mit290.4 2 163060619 to 163060768 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 290.4
Tssr21438 2 163062357 to 163062372 15 + TSS region transcription start site region 21438
Tssr21439 2 163062435 to 163062455 20 + TSS region transcription start site region 21439
Tssr21440 2 163063219 to 163063221 2 + TSS region transcription start site region 21440
Mir7003 2 163068090 to 163068155 65 + miRNA gene microRNA 7003
Tssr21441 2 163068213 to 163068222 9 + TSS region transcription start site region 21441
Tssr21442 2 163074631 to 163074654 23 + TSS region transcription start site region 21442
Gtsf1l 2 163087034 to 163087855 821 - protein coding gene gametocyte specific factor 1-like
Tssr27279 2 163087770 to 163087779 9 - TSS region transcription start site region 27279
Tssr27280 2 163087789 to 163087801 12 - TSS region transcription start site region 27280
Tssr27281 2 163087814 to 163087834 20 - TSS region transcription start site region 27281
Tssr27282 2 163089594 to 163089617 23 - TSS region transcription start site region 27282
Gm22174 2 163092899 to 163093023 124 + miRNA gene predicted gene, 22174
Cpgi12627 2 163104553 to 163104777 224 CpG island CpG island 12627
Tssr21443 2 163122605 to 163122620 15 + TSS region transcription start site region 21443
Gm11454 2 163122606 to 163143959 21353 + lincRNA gene predicted gene 11454
Tssr21444 2 163122647 to 163122693 46 + TSS region transcription start site region 21444
Gm14254 2 163152895 to 163156106 3211 - lincRNA gene predicted gene 14254
D2Dcr115 2 163194446 to 163194547 101 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 115
D2Mit226 2 163194446 to 163194546 100 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 226
Cpgi12628 2 163202508 to 163205004 2496 CpG island CpG island 12628
Tox2 2 163202643 to 163323315 120672 + protein coding gene TOX high mobility group box family member 2
Tssr21445 2 163203072 to 163203133 61 + TSS region transcription start site region 21445
Tssr21446 2 163203140 to 163203149 9 + TSS region transcription start site region 21446