Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:153100546-154920550

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407 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq15 2 111085773 to 154512747 43426974 QTL circadian period of locomotor activity 15
Tssr20863 2 153107656 to 153107673 17 + TSS region transcription start site region 20863
Tssr20864 2 153107702 to 153107709 7 + TSS region transcription start site region 20864
Cpgi12479 2 153108445 to 153109152 707 CpG island CpG island 12479
Hck 2 153108468 to 153151441 42973 + protein coding gene hemopoietic cell kinase
Tssr20865 2 153108474 to 153108484 10 + TSS region transcription start site region 20865
Tssr20866 2 153108489 to 153108542 53 + TSS region transcription start site region 20866
Tssr26882 2 153109018 to 153109022 4 - TSS region transcription start site region 26882
Tssr20867 2 153114476 to 153114506 30 + TSS region transcription start site region 20867
Tssr20868 2 153117608 to 153117630 22 + TSS region transcription start site region 20868
Tssr20869 2 153120363 to 153120398 35 + TSS region transcription start site region 20869
Tssr20870 2 153125503 to 153125535 32 + TSS region transcription start site region 20870
Tssr20871 2 153136565 to 153136568 3 + TSS region transcription start site region 20871
Tssr20872 2 153147483 to 153147492 9 + TSS region transcription start site region 20872
Gm25643 2 153155013 to 153155115 102 + snRNA gene predicted gene, 25643
Tssr20873 2 153161292 to 153161307 15 + TSS region transcription start site region 20873
Tm9sf4 2 153161303 to 153210466 49163 + protein coding gene transmembrane 9 superfamily protein member 4
Tssr20874 2 153161321 to 153161339 18 + TSS region transcription start site region 20874
Cpgi12480 2 153161401 to 153162066 665 CpG island CpG island 12480
Tssr26883 2 153161460 to 153161471 11 - TSS region transcription start site region 26883
Tssr20875 2 153161524 to 153161553 29 + TSS region transcription start site region 20875
Tssr20876 2 153161928 to 153161956 28 + TSS region transcription start site region 20876
Tssr20877 2 153161958 to 153161976 18 + TSS region transcription start site region 20877
D2Mit450 2 153180362 to 153180506 144 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 450
Tssr26884 2 153182472 to 153182492 20 - TSS region transcription start site region 26884
Tssr26885 2 153191486 to 153191497 11 - TSS region transcription start site region 26885
Tssr26886 2 153191521 to 153191536 15 - TSS region transcription start site region 26886
Tssr20878 2 153191794 to 153191808 14 + TSS region transcription start site region 20878
Gm20094 2 153196733 to 153196988 255 - pseudogene predicted gene, 20094
Tspyl3 2 153222370 to 153225441 3071 - protein coding gene TSPY-like 3
Cpgi12481 2 153224990 to 153225440 450 CpG island CpG island 12481
Tssr26887 2 153225033 to 153225052 19 - TSS region transcription start site region 26887
Tssr26888 2 153225377 to 153225394 17 - TSS region transcription start site region 26888
Tssr26889 2 153225396 to 153225442 46 - TSS region transcription start site region 26889
Plagl2 2 153227769 to 153241358 13589 - protein coding gene pleiomorphic adenoma gene-like 2
Tssr26890 2 153231139 to 153231156 17 - TSS region transcription start site region 26890
Tssr26891 2 153231654 to 153231687 33 - TSS region transcription start site region 26891
Tssr26892 2 153231710 to 153231728 18 - TSS region transcription start site region 26892
Tssr26893 2 153232117 to 153232129 12 - TSS region transcription start site region 26893
Tssr20879 2 153232541 to 153232572 31 + TSS region transcription start site region 20879
Tssr26894 2 153237917 to 153237934 17 - TSS region transcription start site region 26894
Cpgi12482 2 153240827 to 153241892 1065 CpG island CpG island 12482
Tssr20880 2 153240915 to 153240926 11 + TSS region transcription start site region 20880
Tssr20881 2 153240929 to 153240943 14 + TSS region transcription start site region 20881
Tssr26895 2 153241343 to 153241354 11 - TSS region transcription start site region 26895
Tssr26896 2 153241358 to 153241394 36 - TSS region transcription start site region 26896
Tssr26897 2 153241402 to 153241411 9 - TSS region transcription start site region 26897
Tssr20882 2 153241452 to 153241466 14 + TSS region transcription start site region 20882
Tssr26898 2 153241497 to 153241500 3 - TSS region transcription start site region 26898
Tssr20883 2 153241502 to 153241603 101 + TSS region transcription start site region 20883
Pofut1 2 153241533 to 153270247 28714 + protein coding gene protein O-fucosyltransferase 1
Tssr20884 2 153241607 to 153241618 11 + TSS region transcription start site region 20884
Tssr26899 2 153241709 to 153241724 15 - TSS region transcription start site region 26899
Tssr20885 2 153278657 to 153278695 38 + TSS region transcription start site region 20885
Tssr20886 2 153278720 to 153278725 5 + TSS region transcription start site region 20886
Tssr20887 2 153278859 to 153278870 11 + TSS region transcription start site region 20887
Gm39961 2 153283852 to 153291302 7450 - lncRNA gene predicted gene, 39961
Cpgi12483 2 153287452 to 153287622 170 CpG island CpG island 12483
Cpgi12484 2 153291058 to 153291833 775 CpG island CpG island 12484
Tssr20888 2 153291404 to 153291459 55 + TSS region transcription start site region 20888
Kif3b 2 153291413 to 153333390 41977 + protein coding gene kinesin family member 3B
Tssr20889 2 153308605 to 153308655 50 + TSS region transcription start site region 20889
Tssr20890 2 153336403 to 153336421 18 + TSS region transcription start site region 20890
2500004C02Rik 2 153341157 to 153345810 4653 - lncRNA gene RIKEN cDNA 2500004C02 gene
Cpgi12485 2 153345378 to 153346945 1567 CpG island CpG island 12485
Tssr697 2 153345502 to 153345506 4 + TSS region transcription start site region 697
Tssr26900 2 153345791 to 153345794 3 - TSS region transcription start site region 26900
Tssr20891 2 153345809 to 153345889 80 + TSS region transcription start site region 20891
Tssr20892 2 153345990 to 153346073 83 + TSS region transcription start site region 20892
Tssr26901 2 153346072 to 153346116 44 - TSS region transcription start site region 26901
Tssr20893 2 153346097 to 153346137 40 + TSS region transcription start site region 20893
Asxl1 2 153346139 to 153404007 57868 + protein coding gene additional sex combs like 1
Tssr20894 2 153346154 to 153346168 14 + TSS region transcription start site region 20894
Tssr20895 2 153346171 to 153346195 24 + TSS region transcription start site region 20895
Tssr26902 2 153346385 to 153346420 35 - TSS region transcription start site region 26902
Tssr20896 2 153346633 to 153346644 11 + TSS region transcription start site region 20896
Tssr20897 2 153347395 to 153347398 3 + TSS region transcription start site region 20897
Tssr20898 2 153354883 to 153354887 4 + TSS region transcription start site region 20898
Tssr20899 2 153357035 to 153357048 13 + TSS region transcription start site region 20899
Tssr20900 2 153368810 to 153368814 4 + TSS region transcription start site region 20900
Tssr20901 2 153376328 to 153376332 4 + TSS region transcription start site region 20901
D2Mit195 2 153390705 to 153390842 137 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 195
Nol4l 2 153407462 to 153529971 122509 - protein coding gene nucleolar protein 4-like
Tssr26903 2 153411421 to 153411429 8 - TSS region transcription start site region 26903
Tssr698 2 153413802 to 153413815 13 + TSS region transcription start site region 698
Gm14472 2 153413849 to 153414130 281 + pseudogene predicted gene 14472
Tssr699 2 153424693 to 153424704 11 - TSS region transcription start site region 699
Cpgi12486 2 153443426 to 153445862 2436 CpG island CpG island 12486
Tssr26904 2 153444389 to 153444407 18 - TSS region transcription start site region 26904
Tssr26905 2 153444417 to 153444440 23 - TSS region transcription start site region 26905
Tssr26906 2 153444441 to 153444492 51 - TSS region transcription start site region 26906
Tssr26907 2 153444586 to 153444615 29 - TSS region transcription start site region 26907
Cpgi12487 2 153491971 to 153493476 1505 CpG island CpG island 12487
Tssr26908 2 153492473 to 153492510 37 - TSS region transcription start site region 26908
Tssr26909 2 153492511 to 153492541 30 - TSS region transcription start site region 26909
Tssr26910 2 153492555 to 153492566 11 - TSS region transcription start site region 26910
4930404H24Rik 2 153492790 to 153493841 1051 + protein coding gene RIKEN cDNA 4930404H24 gene
Tssr26911 2 153505315 to 153505320 5 - TSS region transcription start site region 26911
Cpgi12488 2 153509302 to 153509467 165 CpG island CpG island 12488
D2Mit139 2 153526682 to 153526794 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 139
Cpgi12489 2 153527345 to 153530878 3533 CpG island CpG island 12489
Tssr700 2 153527965 to 153527979 14 + TSS region transcription start site region 700
Tssr26912 2 153529941 to 153529985 44 - TSS region transcription start site region 26912
Tssr26913 2 153530205 to 153530252 47 - TSS region transcription start site region 26913
Tssr701 2 153539688 to 153539690 2 + TSS region transcription start site region 701
Tssr26914 2 153549917 to 153549933 16 - TSS region transcription start site region 26914
Cpgi12490 2 153593455 to 153593649 194 CpG island CpG island 12490
Tssr20902 2 153601142 to 153601183 41 + TSS region transcription start site region 20902
Tssr20903 2 153609820 to 153609833 13 + TSS region transcription start site region 20903
Tssr702 2 153611444 to 153611446 2 - TSS region transcription start site region 702
Commd7 2 153616933 to 153632781 15848 - protein coding gene COMM domain containing 7
Cpgi12491 2 153632298 to 153632950 652 CpG island CpG island 12491
Tssr26915 2 153632679 to 153632757 78 - TSS region transcription start site region 26915
Tssr26916 2 153632775 to 153632793 18 - TSS region transcription start site region 26916
Tssr20904 2 153641992 to 153642011 19 + TSS region transcription start site region 20904
Dnmt3bos 2 153648690 to 153650286 1596 - antisense lncRNA gene DNA methyltransferase 3B, opposite strand
Cpgi12492 2 153648830 to 153650606 1776 CpG island CpG island 12492
Tssr20905 2 153649442 to 153649460 18 + TSS region transcription start site region 20905
Dnmt3b 2 153649450 to 153687730 38280 + protein coding gene DNA methyltransferase 3B
Tssr20906 2 153649474 to 153649516 42 + TSS region transcription start site region 20906
Tssr20907 2 153649520 to 153649529 9 + TSS region transcription start site region 20907
Tssr20908 2 153649645 to 153649683 38 + TSS region transcription start site region 20908
Tssr20909 2 153670840 to 153670882 42 + TSS region transcription start site region 20909
Tssr20910 2 153677179 to 153677208 29 + TSS region transcription start site region 20910
Tssr20911 2 153686620 to 153686635 15 + TSS region transcription start site region 20911
Tssr703 2 153686907 to 153686929 22 + TSS region transcription start site region 703
Gm17897 2 153703199 to 153704046 847 - pseudogene predicted gene, 17897
Dnmt3c 2 153706484 to 153730013 23529 + protein coding gene DNA methyltransferase 3C
Cpgi12493 2 153740855 to 153742076 1221 CpG island CpG island 12493
Tssr20912 2 153741278 to 153741294 16 + TSS region transcription start site region 20912
Mapre1 2 153741287 to 153773317 32030 + protein coding gene microtubule-associated protein, RP/EB family, member 1
Tssr20913 2 153741318 to 153741327 9 + TSS region transcription start site region 20913
Tssr20914 2 153741334 to 153741375 41 + TSS region transcription start site region 20914
Tssr20915 2 153758053 to 153758081 28 + TSS region transcription start site region 20915
Cpgi12494 2 153779010 to 153779354 344 CpG island CpG island 12494
Tssr20916 2 153779227 to 153779235 8 + TSS region transcription start site region 20916
Tssr20917 2 153779240 to 153779251 11 + TSS region transcription start site region 20917
Tssr20918 2 153779268 to 153779279 11 + TSS region transcription start site region 20918
Efcab8 2 153780879 to 153795182 14303 + protein coding gene EF-hand calcium binding domain 8
Gm38434 2 153804688 to 153844752 40064 + protein coding gene predicted gene, 38434
Tssr20919 2 153805015 to 153805019 4 + TSS region transcription start site region 20919
Tssr20920 2 153826050 to 153826065 15 + TSS region transcription start site region 20920
Tssr20921 2 153826081 to 153826086 5 + TSS region transcription start site region 20921
Gm14494 2 153826171 to 153826605 434 + pseudogene predicted gene 14494
Sun5 2 153856188 to 153871084 14896 - protein coding gene Sad1 and UNC84 domain containing 5
Tssr26917 2 153871061 to 153871072 11 - TSS region transcription start site region 26917
Tssr26918 2 153871076 to 153871104 28 - TSS region transcription start site region 26918
Tssr20922 2 153874978 to 153874987 9 + TSS region transcription start site region 20922
Tssr704 2 153875038 to 153875045 7 + TSS region transcription start site region 704
Bpifb2 2 153875045 to 153895270 20225 + protein coding gene BPI fold containing family B, member 2
Tssr20923 2 153875065 to 153875077 12 + TSS region transcription start site region 20923
Tssr20924 2 153900374 to 153900378 4 + TSS region transcription start site region 20924
Bpifb6 2 153900388 to 153912795 12407 + protein coding gene BPI fold containing family B, member 6
Bpifb3 2 153918230 to 153932996 14766 + protein coding gene BPI fold containing family B, member 3
Tssr20925 2 153918391 to 153918396 5 + TSS region transcription start site region 20925
Tssr20926 2 153925041 to 153925081 40 + TSS region transcription start site region 20926
Bpifb4 2 153938217 to 153963852 25635 + protein coding gene BPI fold containing family B, member 4
Tssr20927 2 153938218 to 153938223 5 + TSS region transcription start site region 20927
Tssr20928 2 153943919 to 153943934 15 + TSS region transcription start site region 20928
Tssr20929 2 153943945 to 153943952 7 + TSS region transcription start site region 20929
D2Mit59 2 153945202 to 153945344 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 59
D2Dcr108 2 153945227 to 153945365 138 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 108
Tssr20930 2 153966391 to 153966438 47 + TSS region transcription start site region 20930
D2Dcr109 2 153972905 to 153973005 100 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 109
D2Mit493 2 153972906 to 153973015 109 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 493
Tssr20931 2 153974703 to 153974709 6 + TSS region transcription start site region 20931
Tssr20932 2 153974751 to 153974762 11 + TSS region transcription start site region 20932
Tssr20933 2 153974769 to 153974780 11 + TSS region transcription start site region 20933
Tssr20934 2 153974797 to 153974808 11 + TSS region transcription start site region 20934
Tssr20935 2 153974814 to 153974830 16 + TSS region transcription start site region 20935
Tssr20936 2 153974844 to 153974855 11 + TSS region transcription start site region 20936
Tssr20937 2 153974862 to 153974874 12 + TSS region transcription start site region 20937
Tssr20938 2 153974906 to 153974935 29 + TSS region transcription start site region 20938
Bpifa6 2 153974945 to 154000495 25550 + protein coding gene BPI fold containing family A, member 6
Tssr705 2 153982917 to 153982941 24 + TSS region transcription start site region 705
Tssr20939 2 153986362 to 153986369 7 + TSS region transcription start site region 20939
Tssr26919 2 153986455 to 153986472 17 - TSS region transcription start site region 26919
Tssr20940 2 153986484 to 153986487 3 + TSS region transcription start site region 20940
Tssr20941 2 153986589 to 153986595 6 + TSS region transcription start site region 20941
Tssr20942 2 153988298 to 153988305 7 + TSS region transcription start site region 20942
Tssr20943 2 153988498 to 153988525 27 + TSS region transcription start site region 20943
Tssr20944 2 154000222 to 154000229 7 + TSS region transcription start site region 20944
Tssr20945 2 154000437 to 154000461 24 + TSS region transcription start site region 20945
Tssr20946 2 154008227 to 154008244 17 + TSS region transcription start site region 20946
Tssr20947 2 154008256 to 154008274 18 + TSS region transcription start site region 20947
Tssr20948 2 154008275 to 154008277 2 + TSS region transcription start site region 20948
Bpifa2 2 154008276 to 154016073 7797 + protein coding gene BPI fold containing family A, member 2
Tssr20949 2 154008329 to 154008343 14 + TSS region transcription start site region 20949
Tssr20950 2 154009103 to 154009111 8 + TSS region transcription start site region 20950
Tssr20951 2 154009165 to 154009174 9 + TSS region transcription start site region 20951
Tssr20952 2 154009187 to 154009194 7 + TSS region transcription start site region 20952
Tssr706 2 154009205 to 154009210 5 + TSS region transcription start site region 706
Tssr20953 2 154009753 to 154009758 5 + TSS region transcription start site region 20953
Tssr20954 2 154009791 to 154009801 10 + TSS region transcription start site region 20954
Tssr20955 2 154009808 to 154009830 22 + TSS region transcription start site region 20955
Tssr20956 2 154009861 to 154009872 11 + TSS region transcription start site region 20956
Tssr20957 2 154010523 to 154010535 12 + TSS region transcription start site region 20957
Tssr707 2 154010546 to 154010550 4 + TSS region transcription start site region 707
Tssr20958 2 154011350 to 154011376 26 + TSS region transcription start site region 20958
Tssr20959 2 154011412 to 154011418 6 + TSS region transcription start site region 20959