Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:148567277-149952145

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otx2m2 2 123390053 to 148858457 25468404 QTL orthodenticle homolog 2 modifier 2
nmf62 2 128781466 to 148620946 19839480 heritable phenotypic marker neuroscience mutagenesis facility, 62
D2Mit407 2 148620831 to 148620946 115 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 407
Gm25866 2 148624711 to 148624822 111 + snoRNA gene predicted gene, 25866
Cpgi12399 2 148672381 to 148673068 687 CpG island CpG island 12399
Nxt1 2 148672615 to 148676026 3411 + protein coding gene NTF2-related export protein 1
Tssr20647 2 148672634 to 148672722 88 + TSS region transcription start site region 20647
Cpgi12400 2 148677759 to 148678170 411 CpG island CpG island 12400
D2Mit405 2 148680172 to 148680255 83 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 405
Plast2b 2 148680255 to 84182854 -64497401 QTL plasma plant sterol 2b
Gm46771 2 148680278 to 148680915 637 - lncRNA gene predicted gene, 46771
Cpgi12401 2 148680747 to 148681713 966 CpG island CpG island 12401
Gzf1 2 148681023 to 148692949 11926 + protein coding gene GDNF-inducible zinc finger protein 1
Tssr20648 2 148681134 to 148681150 16 + TSS region transcription start site region 20648
Tssr20649 2 148681154 to 148681197 43 + TSS region transcription start site region 20649
Tssr20650 2 148681199 to 148681218 19 + TSS region transcription start site region 20650
Napb 2 148693985 to 148732420 38435 - protein coding gene N-ethylmaleimide sensitive fusion protein attachment protein beta
D2Mit47.2 2 148696595 to 148696714 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 47.2
D2Mit47 2 148696671 to 148696828 157 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 47
D2Mit47.1 2 148696787 to 148696903 116 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 47.1
Tssr26667 2 148696996 to 148697007 11 - TSS region transcription start site region 26667
Tssr26668 2 148701172 to 148701183 11 - TSS region transcription start site region 26668
Tssr26669 2 148701205 to 148701216 11 - TSS region transcription start site region 26669
Tssr20651 2 148713740 to 148713747 7 + TSS region transcription start site region 20651
Cpgi12402 2 148731590 to 148732602 1012 CpG island CpG island 12402
Tssr26670 2 148732368 to 148732372 4 - TSS region transcription start site region 26670
Tssr26671 2 148732378 to 148732455 77 - TSS region transcription start site region 26671
Tssr26672 2 148732457 to 148732463 6 - TSS region transcription start site region 26672
Tssr20652 2 148750352 to 148750376 24 + TSS region transcription start site region 20652
Cstl1 2 148750361 to 148755378 5017 + protein coding gene cystatin-like 1
Cst11 2 148768618 to 148771497 2879 - protein coding gene cystatin 11
Tssr26673 2 148771401 to 148771435 34 - TSS region transcription start site region 26673
Tssr26674 2 148771451 to 148771468 17 - TSS region transcription start site region 26674
Tssr26675 2 148771489 to 148771503 14 - TSS region transcription start site region 26675
Tssr26676 2 148771556 to 148771569 13 - TSS region transcription start site region 26676
Cstdc1 2 148782009 to 148785936 3927 + protein coding gene cystatin domain containing 1
Tssr20653 2 148782050 to 148782072 22 + TSS region transcription start site region 20653
Tssr20654 2 148782086 to 148782108 22 + TSS region transcription start site region 20654
Tssr20655 2 148789349 to 148789406 57 + TSS region transcription start site region 20655
Cst12 2 148789361 to 148793437 4076 + protein coding gene cystatin 12
Tssr20656 2 148798611 to 148798621 10 + TSS region transcription start site region 20656
Tssr20657 2 148798650 to 148798658 8 + TSS region transcription start site region 20657
Tssr20658 2 148798812 to 148798844 32 + TSS region transcription start site region 20658
Cst8 2 148798839 to 148805596 6757 + protein coding gene cystatin 8 (cystatin-related epididymal spermatogenic)
Tssr20659 2 148798849 to 148798870 21 + TSS region transcription start site region 20659
Tssr20660 2 148798872 to 148798886 14 + TSS region transcription start site region 20660
Tssr20661 2 148799487 to 148799498 11 + TSS region transcription start site region 20661
Tssr20662 2 148799528 to 148799534 6 + TSS region transcription start site region 20662
Tssr20663 2 148799554 to 148799563 9 + TSS region transcription start site region 20663
Tssr20664 2 148799627 to 148799654 27 + TSS region transcription start site region 20664
Tssr20665 2 148799656 to 148799674 18 + TSS region transcription start site region 20665
Tssr20666 2 148799704 to 148799717 13 + TSS region transcription start site region 20666
Tssr20667 2 148799742 to 148799756 14 + TSS region transcription start site region 20667
Tssr20668 2 148799873 to 148799891 18 + TSS region transcription start site region 20668
Tssr20669 2 148799905 to 148799910 5 + TSS region transcription start site region 20669
Tssr20670 2 148799949 to 148799967 18 + TSS region transcription start site region 20670
Tssr20671 2 148806019 to 148806025 6 + TSS region transcription start site region 20671
Cst13 2 148820081 to 148830410 10329 + protein coding gene cystatin 13
Tssr20672 2 148820098 to 148820111 13 + TSS region transcription start site region 20672
Tssr20673 2 148820116 to 148820124 8 + TSS region transcription start site region 20673
D2Mit423 2 148825415 to 148825550 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 423
Hylaq1 2 148825550 to 84182854 -64642696 QTL Hyperlocomotor activity related QTL 1
Tssr20674 2 148835116 to 148835125 9 + TSS region transcription start site region 20674
Tssr20675 2 148835140 to 148835193 53 + TSS region transcription start site region 20675
Cst9 2 148835147 to 148838737 3590 + protein coding gene cystatin 9
Tssr20676 2 148835194 to 148835195 1 + TSS region transcription start site region 20676
Tssr20677 2 148835197 to 148835227 30 + TSS region transcription start site region 20677
Tssr20678 2 148835333 to 148835334 1 + TSS region transcription start site region 20678
Cstdc2 2 148844620 to 148850966 6346 - protein coding gene cystatin domain containing 2
Tssr26677 2 148850899 to 148850954 55 - TSS region transcription start site region 26677
Tssr26678 2 148850959 to 148850985 26 - TSS region transcription start site region 26678
Tssr26679 2 148851123 to 148851130 7 - TSS region transcription start site region 26679
Tssr26680 2 148851165 to 148851170 5 - TSS region transcription start site region 26680
Tssr26681 2 148851183 to 148851194 11 - TSS region transcription start site region 26681
Tssr689 2 148851207 to 148851213 6 - TSS region transcription start site region 689
D2Mit282 2 148858318 to 148858457 139 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 282
D2Mit340 2 148858324 to 148858477 153 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 340
D2Dcr104 2 148858358 to 148858453 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 104
D2Mit282.1 2 148858439 to 148858559 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 282.1
Dssc2 2 148858457 to 24334620 -124523837 QTL dextran sodium sulfate induced colitis QTL2
Tssr20679 2 148871717 to 148871732 15 + TSS region transcription start site region 20679
Cst3 2 148871722 to 148875512 3790 - protein coding gene cystatin C
Tssr26682 2 148871951 to 148871960 9 - TSS region transcription start site region 26682
Tssr20680 2 148871959 to 148871994 35 + TSS region transcription start site region 20680
Tssr26683 2 148871992 to 148872010 18 - TSS region transcription start site region 26683
Tssr26684 2 148872020 to 148872047 27 - TSS region transcription start site region 26684
Tssr20681 2 148872851 to 148872891 40 + TSS region transcription start site region 20681
Tssr26685 2 148872871 to 148872906 35 - TSS region transcription start site region 26685
Tssr26686 2 148872924 to 148872939 15 - TSS region transcription start site region 26686
Tssr26687 2 148873043 to 148873070 27 - TSS region transcription start site region 26687
Cpgi12403 2 148874764 to 148875613 849 CpG island CpG island 12403
Tssr20682 2 148875148 to 148875171 23 + TSS region transcription start site region 20682
Tssr20683 2 148875224 to 148875256 32 + TSS region transcription start site region 20683
Tssr26688 2 148875421 to 148875444 23 - TSS region transcription start site region 26688
Tssr26689 2 148875452 to 148875488 36 - TSS region transcription start site region 26689
Tssr26690 2 148875604 to 148875616 12 - TSS region transcription start site region 26690
Tssr26691 2 148875623 to 148875641 18 - TSS region transcription start site region 26691
Gm38221 2 148889924 to 148890288 364 - unclassified gene predicted gene, 38221
D2Mit406 2 148896175 to 148896321 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 406
Gm14129 2 148927735 to 148931707 3972 - pseudogene predicted gene 14129
Gm1330 2 148990343 to 149003251 12908 - protein coding gene predicted gene 1330
Tssr26692 2 149003302 to 149003324 22 - TSS region transcription start site region 26692
Gm9425 2 149015024 to 149016354 1330 + pseudogene predicted gene 9425
Gm10750 2 149015732 to 149017237 1505 - protein coding gene predicted gene 10750
Tssr20684 2 149085559 to 149085562 3 + TSS region transcription start site region 20684
Tssr26693 2 149092384 to 149092394 10 - TSS region transcription start site region 26693
Tssr26694 2 149092417 to 149092426 9 - TSS region transcription start site region 26694
Bts1 2 149182239 to 149182410 171 QTL bladder tumor susceptibility 1
D2Mit260 2 149182239 to 149182410 171 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 260
Tssr20685 2 149257011 to 149257029 18 + TSS region transcription start site region 20685
Gm14135 2 149257277 to 149262145 4868 + lincRNA gene predicted gene 14135
Tssr20686 2 149283603 to 149283607 4 + TSS region transcription start site region 20686
Gm14132 2 149333077 to 149334789 1712 - pseudogene predicted gene 14132
Gm14131 2 149356687 to 149357405 718 + pseudogene predicted gene 14131
Tssr20687 2 149405010 to 149405028 18 + TSS region transcription start site region 20687
Cst10 2 149405249 to 149410278 5029 + protein coding gene cystatin 10 (chondrocytes)
Tssr20688 2 149405305 to 149405312 7 + TSS region transcription start site region 20688
Tssr20689 2 149405315 to 149405332 17 + TSS region transcription start site region 20689
D2Mit408 2 149494735 to 149494844 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 408
Gm24551 2 149566194 to 149566285 91 - snoRNA gene predicted gene, 24551
D2Mit110 2 149585526 to 149585631 105 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 110
Gm14130 2 149743175 to 149744161 986 + pseudogene predicted gene 14130
Gm14133 2 149743927 to 149798743 54816 - lincRNA gene predicted gene 14133
Tssr26695 2 149798716 to 149798729 13 - TSS region transcription start site region 26695
Tssr26696 2 149798807 to 149798824 17 - TSS region transcription start site region 26696
Cpgi12404 2 149830294 to 149831712 1418 CpG island CpG island 12404
C530025M09Rik 2 149830524 to 149831213 689 - protein coding gene RIKEN cDNA C530025M09 gene
Syndig1 2 149830783 to 150004392 173609 + protein coding gene synapse differentiation inducing 1
Tssr20690 2 149830789 to 149830807 18 + TSS region transcription start site region 20690
Tssr20691 2 149830813 to 149830831 18 + TSS region transcription start site region 20691
Tssr20692 2 149830840 to 149830879 39 + TSS region transcription start site region 20692
Tssr20693 2 149830894 to 149830907 13 + TSS region transcription start site region 20693
Gm18167 2 149867507 to 149868171 664 + pseudogene predicted gene, 18167
Tssr20694 2 149899681 to 149899684 3 + TSS region transcription start site region 20694
Edvq3 2 149952001 to 149952001 0 QTL endothelium dependent vasorelaxation QTL 3