Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:131254204-132114312

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154 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi12290 2 131262012 to 131263187 1175 CpG island CpG island 12290
Tssr20259 2 131262042 to 131262047 5 + TSS region transcription start site region 20259
Tssr20260 2 131262469 to 131262563 94 + TSS region transcription start site region 20260
Pank2 2 131262495 to 131299188 36693 + protein coding gene pantothenate kinase 2
Tssr20261 2 131280351 to 131280367 16 + TSS region transcription start site region 20261
Tssr20262 2 131287321 to 131287324 3 + TSS region transcription start site region 20262
Mir103-2 2 131288052 to 131288137 85 + miRNA gene microRNA 103-2
Rnf24 2 131298488 to 131352892 54404 - protein coding gene ring finger protein 24
Gm14233 2 131298545 to 131299835 1290 + unclassified non-coding RNA gene predicted gene 14233
Snrpert 2 131322088 to 131322366 278 - pseudogene small nuclear ribonucleoprotein E, pseudogene
Tssr26391 2 131328982 to 131328989 7 - TSS region transcription start site region 26391
Tssr26392 2 131337634 to 131337643 9 - TSS region transcription start site region 26392
Cpgi12291 2 131352330 to 131353184 854 CpG island CpG island 12291
Tssr26393 2 131352813 to 131352832 19 - TSS region transcription start site region 26393
Tssr26394 2 131352834 to 131352856 22 - TSS region transcription start site region 26394
Tssr26395 2 131352857 to 131352889 32 - TSS region transcription start site region 26395
Tssr20263 2 131352996 to 131353022 26 + TSS region transcription start site region 20263
Gm30590 2 131353113 to 131363938 10825 + lncRNA gene predicted gene, 30590
Gm46765 2 131353158 to 131394652 41494 - lncRNA gene predicted gene, 46765
Tssr20264 2 131393089 to 131393100 11 + TSS region transcription start site region 20264
Gm22902 2 131413661 to 131413962 301 - ribozyme gene predicted gene, 22902
Gm14283 2 131414921 to 131415245 324 - pseudogene predicted gene 14283
Tssr656 2 131430646 to 131430676 30 + TSS region transcription start site region 656
Tssr26396 2 131434371 to 131434381 10 - TSS region transcription start site region 26396
Tssr26397 2 131434389 to 131434396 7 - TSS region transcription start site region 26397
Tssr26398 2 131443447 to 131443458 11 - TSS region transcription start site region 26398
Gm14304 2 131454128 to 131454640 512 - pseudogene predicted gene 14304
Tssr26399 2 131454399 to 131454413 14 - TSS region transcription start site region 26399
D2Mit307 2 131471753 to 131471901 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 307
Gm30679 2 131481838 to 131491749 9911 - lncRNA gene predicted gene, 30679
Cpgi12292 2 131491499 to 131492859 1360 CpG island CpG island 12292
Tssr26400 2 131491684 to 131491714 30 - TSS region transcription start site region 26400
Tssr20265 2 131491751 to 131491760 9 + TSS region transcription start site region 20265
Smox 2 131491784 to 131525183 33399 + protein coding gene spermine oxidase
Tssr20266 2 131491883 to 131491940 57 + TSS region transcription start site region 20266
Tssr20267 2 131491958 to 131491969 11 + TSS region transcription start site region 20267
Tssr20268 2 131495670 to 131495675 5 + TSS region transcription start site region 20268
Tssr20269 2 131498628 to 131498635 7 + TSS region transcription start site region 20269
Tssr20270 2 131499265 to 131499269 4 + TSS region transcription start site region 20270
Tssr20271 2 131505658 to 131505661 3 + TSS region transcription start site region 20271
Tssr20272 2 131506601 to 131506609 8 + TSS region transcription start site region 20272
Tssr20273 2 131508967 to 131508979 12 + TSS region transcription start site region 20273
Tssr20274 2 131514531 to 131514551 20 + TSS region transcription start site region 20274
Tssr20275 2 131514860 to 131514865 5 + TSS region transcription start site region 20275
Cpgi12293 2 131520519 to 131521165 646 CpG island CpG island 12293
Gm30732 2 131527212 to 131530344 3132 + protein coding gene predicted gene, 30732
Gm39938 2 131537662 to 131561060 23398 + lncRNA gene predicted gene, 39938
Tssr20276 2 131538503 to 131538511 8 + TSS region transcription start site region 20276
Cpgi12294 2 131545781 to 131546759 978 CpG island CpG island 12294
Adra1d 2 131545850 to 131562283 16433 - protein coding gene adrenergic receptor, alpha 1d
Cpgi12295 2 131561032 to 131563141 2109 CpG island CpG island 12295
Tssr20277 2 131561605 to 131561619 14 + TSS region transcription start site region 20277
Gm14285 2 131561614 to 131563179 1565 + antisense lncRNA gene predicted gene 14285
Tssr20278 2 131561638 to 131561651 13 + TSS region transcription start site region 20278
Tssr26401 2 131562488 to 131562502 14 - TSS region transcription start site region 26401
Tssr26402 2 131562515 to 131562535 20 - TSS region transcription start site region 26402
Tssr26403 2 131562755 to 131562773 18 - TSS region transcription start site region 26403
D2Mit77 2 131602630 to 131602799 169 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 77
Gm14280 2 131652897 to 131721838 68941 - antisense lncRNA gene predicted gene 14280
D2Dcr74 2 131684204 to 131684312 108 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 74
D2Mit525 2 131684211 to 131684329 118 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 525
Gm30986 2 131740342 to 131749227 8885 + lncRNA gene predicted gene, 30986
Tssr657 2 131807222 to 131807223 1 + TSS region transcription start site region 657
5330413P13Rik 2 131820006 to 131847656 27650 - lincRNA gene RIKEN cDNA 5330413P13 gene
Tssr20279 2 131843122 to 131843138 16 + TSS region transcription start site region 20279
Gm14282 2 131845356 to 131845595 239 - pseudogene predicted gene 14282
Gm14281 2 131846405 to 131847674 1269 + pseudogene predicted gene 14281
Tssr26404 2 131847607 to 131847678 71 - TSS region transcription start site region 26404
Erv3 2 131853678 to 131859747 6069 - protein coding gene endogenous retroviral sequence 3
Tssr26405 2 131853703 to 131853753 50 - TSS region transcription start site region 26405
Tssr26406 2 131854456 to 131854467 11 - TSS region transcription start site region 26406
Tssr26407 2 131855028 to 131855067 39 - TSS region transcription start site region 26407
Tssr26408 2 131855134 to 131855155 21 - TSS region transcription start site region 26408
Tssr658 2 131855246 to 131855273 27 - TSS region transcription start site region 658
Tssr20280 2 131855368 to 131855378 10 + TSS region transcription start site region 20280
Tssr26409 2 131855389 to 131855398 9 - TSS region transcription start site region 26409
Tssr659 2 131855398 to 131855407 9 - TSS region transcription start site region 659
Tssr26410 2 131855413 to 131855440 27 - TSS region transcription start site region 26410
Tssr26411 2 131855452 to 131855490 38 - TSS region transcription start site region 26411
Tssr26412 2 131855531 to 131855544 13 - TSS region transcription start site region 26412
Tssr26413 2 131855621 to 131855630 9 - TSS region transcription start site region 26413
Tssr660 2 131855644 to 131855645 1 - TSS region transcription start site region 660
Tssr26414 2 131855807 to 131855818 11 - TSS region transcription start site region 26414
Tssr26415 2 131855829 to 131855840 11 - TSS region transcription start site region 26415
Tssr20281 2 131856543 to 131856553 10 + TSS region transcription start site region 20281
Tssr26416 2 131859739 to 131859755 16 - TSS region transcription start site region 26416
Tssr26417 2 131859826 to 131859827 1 - TSS region transcription start site region 26417
Lamr1-ps1 2 131904086 to 131904959 873 + pseudogene laminin receptor 1 (ribosomal protein SA), pseudogene 1
Tssr26418 2 131909775 to 131909781 6 - TSS region transcription start site region 26418
Cpgi12296 2 131909781 to 131910407 626 CpG island CpG island 12296
Prnp 2 131909928 to 131938429 28501 + protein coding gene prion protein
Tssr20282 2 131909931 to 131909948 17 + TSS region transcription start site region 20282
Tssr20283 2 131909951 to 131909979 28 + TSS region transcription start site region 20283
Prn 2 131909957 to 131956130 46173 + protein coding gene prion protein readthrough transcript
Tssr26419 2 131910698 to 131910701 3 - TSS region transcription start site region 26419
Tssr20284 2 131936698 to 131936714 16 + TSS region transcription start site region 20284
Tssr20285 2 131936792 to 131936804 12 + TSS region transcription start site region 20285
Tssr661 2 131936814 to 131936826 12 + TSS region transcription start site region 661
Tssr20286 2 131937005 to 131937018 13 + TSS region transcription start site region 20286
Tssr20287 2 131937127 to 131937146 19 + TSS region transcription start site region 20287
Tssr20288 2 131937458 to 131937476 18 + TSS region transcription start site region 20288
Tssr20289 2 131950855 to 131950867 12 + TSS region transcription start site region 20289
Prnd 2 131950861 to 131956130 5269 + protein coding gene prion like protein doppel
Tssr20290 2 131951011 to 131951028 17 + TSS region transcription start site region 20290
Cpgi12297 2 131953092 to 131953549 457 CpG island CpG island 12297
Tssr26420 2 131954993 to 131955008 15 - TSS region transcription start site region 26420
Cpgi12298 2 131955343 to 131955565 222 CpG island CpG island 12298
Mdq14 2 131981644 to 131981644 0 QTL mammary ductal QTL 14
Tssr26421 2 131991649 to 131991695 46 - TSS region transcription start site region 26421
Rassf2 2 131992850 to 132030319 37469 - protein coding gene Ras association (RalGDS/AF-6) domain family member 2
Tssr26422 2 131993055 to 131993060 5 - TSS region transcription start site region 26422
Tssr26423 2 131993589 to 131993601 12 - TSS region transcription start site region 26423
Tssr26424 2 131994184 to 131994207 23 - TSS region transcription start site region 26424
Tssr26425 2 131994315 to 131994336 21 - TSS region transcription start site region 26425
Tssr26426 2 131994614 to 131994640 26 - TSS region transcription start site region 26426
Tssr26427 2 132002678 to 132002684 6 - TSS region transcription start site region 26427
Tssr662 2 132006782 to 132006811 29 + TSS region transcription start site region 662
Tssr26428 2 132007456 to 132007478 22 - TSS region transcription start site region 26428
Tssr26429 2 132019414 to 132019456 42 - TSS region transcription start site region 26429
Tssr26430 2 132019468 to 132019476 8 - TSS region transcription start site region 26430
Tssr26431 2 132020731 to 132020779 48 - TSS region transcription start site region 26431
Tssr26432 2 132021109 to 132021120 11 - TSS region transcription start site region 26432
Tssr26433 2 132021135 to 132021178 43 - TSS region transcription start site region 26433
Tssr26434 2 132021193 to 132021204 11 - TSS region transcription start site region 26434
Tssr26435 2 132021228 to 132021238 10 - TSS region transcription start site region 26435
Gm39939 2 132021258 to 132025798 4540 + lncRNA gene predicted gene, 39939
Tssr20291 2 132021284 to 132021297 13 + TSS region transcription start site region 20291
Tssr20292 2 132027660 to 132027684 24 + TSS region transcription start site region 20292
Tssr20293 2 132028344 to 132028354 10 + TSS region transcription start site region 20293
Cpgi12299 2 132029063 to 132030522 1459 CpG island CpG island 12299
Tssr26436 2 132029161 to 132029184 23 - TSS region transcription start site region 26436
Tssr26437 2 132029188 to 132029205 17 - TSS region transcription start site region 26437
Tssr26438 2 132029788 to 132029804 16 - TSS region transcription start site region 26438
Tssr26439 2 132029808 to 132029813 5 - TSS region transcription start site region 26439
Tssr26440 2 132029815 to 132029822 7 - TSS region transcription start site region 26440
Tssr26441 2 132029824 to 132029844 20 - TSS region transcription start site region 26441
Tssr26442 2 132029845 to 132029901 56 - TSS region transcription start site region 26442
Tssr20294 2 132029980 to 132029986 6 + TSS region transcription start site region 20294
Gm31179 2 132030405 to 132040385 9980 + lncRNA gene predicted gene, 31179
Slc23a2 2 132052496 to 132145108 92612 - protein coding gene solute carrier family 23 (nucleobase transporters), member 2
Tssr26443 2 132053289 to 132053302 13 - TSS region transcription start site region 26443
Tssr26444 2 132055927 to 132055944 17 - TSS region transcription start site region 26444
Tssr26445 2 132060780 to 132060792 12 - TSS region transcription start site region 26445
Tssr26446 2 132094175 to 132094204 29 - TSS region transcription start site region 26446
Tssr26447 2 132094587 to 132094608 21 - TSS region transcription start site region 26447
Tssr20295 2 132094718 to 132094744 26 + TSS region transcription start site region 20295
Gm14052 2 132099860 to 132100812 952 + pseudogene predicted gene 14052
Tssr26448 2 132102676 to 132102691 15 - TSS region transcription start site region 26448
Tssr26449 2 132103418 to 132103446 28 - TSS region transcription start site region 26449
Tssr26450 2 132103454 to 132103465 11 - TSS region transcription start site region 26450
Tssr26451 2 132111440 to 132111465 25 - TSS region transcription start site region 26451
Tssr26452 2 132111467 to 132111478 11 - TSS region transcription start site region 26452
Tssr26453 2 132111497 to 132111508 11 - TSS region transcription start site region 26453
Tssr26454 2 132112338 to 132112354 16 - TSS region transcription start site region 26454