Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:129044826-129304827

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vinac1 2 129025073 to 129048172 23099 - protein coding gene vinculin/alpha-catenin family member 1
Tssr26184 2 129055810 to 129055817 7 - TSS region transcription start site region 26184
Gm14022 2 129060946 to 129065686 4740 - unclassified non-coding RNA gene predicted gene 14022
Cpgi12244 2 129065347 to 129066608 1261 CpG island CpG island 12244
Tssr26185 2 129065900 to 129065916 16 - TSS region transcription start site region 26185
Tssr20094 2 129065934 to 129065994 60 + TSS region transcription start site region 20094
Ttl 2 129065947 to 129096283 30336 + protein coding gene tubulin tyrosine ligase
Tssr20095 2 129066003 to 129066015 12 + TSS region transcription start site region 20095
D2Mit399.2 2 129089728 to 129089839 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 399.2
D2Mit399.1 2 129089906 to 129090015 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 399.1
Gm46764 2 129094408 to 129100949 6541 - lncRNA gene predicted gene, 46764
Cpgi12245 2 129100870 to 129101326 456 CpG island CpG island 12245
Tssr26186 2 129100907 to 129100957 50 - TSS region transcription start site region 26186
Tssr20096 2 129100982 to 129100989 7 + TSS region transcription start site region 20096
Polr1b 2 129100995 to 129126594 25599 + protein coding gene polymerase (RNA) I polypeptide B
Tssr20097 2 129101000 to 129101066 66 + TSS region transcription start site region 20097
Tssr20098 2 129101074 to 129101083 9 + TSS region transcription start site region 20098
Tssr20099 2 129122884 to 129122886 2 + TSS region transcription start site region 20099
Tssr20100 2 129123064 to 129123069 5 + TSS region transcription start site region 20100
Cpgi12246 2 129127216 to 129127393 177 CpG island CpG island 12246
Cpgi12247 2 129129242 to 129130080 838 CpG island CpG island 12247
Chchd5 2 129129700 to 129134112 4412 + protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 5
Tssr20101 2 129129782 to 129129791 9 + TSS region transcription start site region 20101
Tssr20102 2 129129797 to 129129831 34 + TSS region transcription start site region 20102
Tssr20103 2 129130152 to 129130171 19 + TSS region transcription start site region 20103
Gm14026 2 129168700 to 129170488 1788 + pseudogene predicted gene 14026
Tssr26187 2 129174826 to 129174827 1 - TSS region transcription start site region 26187
AI847159 2 129178148 to 129180673 2525 - antisense lncRNA gene expressed sequence AI847159
Tssr26188 2 129180638 to 129180659 21 - TSS region transcription start site region 26188
Tssr26189 2 129180662 to 129180671 9 - TSS region transcription start site region 26189
Gm14029 2 129182482 to 129183947 1465 - antisense lncRNA gene predicted gene 14029
Gm39932 2 129182673 to 129193314 10641 + lncRNA gene predicted gene, 39932
Tssr26190 2 129183777 to 129183838 61 - TSS region transcription start site region 26190
Gm4430 2 129196086 to 129197126 1040 - unclassified gene predicted gene 4430
Tssr20104 2 129196587 to 129196619 32 + TSS region transcription start site region 20104
Cpgi12248 2 129198078 to 129199594 1516 CpG island CpG island 12248
Tssr649 2 129198502 to 129198513 11 - TSS region transcription start site region 649
Tssr26191 2 129198548 to 129198564 16 - TSS region transcription start site region 26191
Tssr26192 2 129198568 to 129198588 20 - TSS region transcription start site region 26192
Tssr20105 2 129198757 to 129198769 12 + TSS region transcription start site region 20105
Slc20a1 2 129198773 to 129211615 12842 + protein coding gene solute carrier family 20, member 1
Tssr20106 2 129198793 to 129198811 18 + TSS region transcription start site region 20106
Tssr26193 2 129199181 to 129199197 16 - TSS region transcription start site region 26193
Tssr26194 2 129199205 to 129199267 62 - TSS region transcription start site region 26194
Tssr20107 2 129205206 to 129205210 4 + TSS region transcription start site region 20107
9830144P21Rik 2 129205958 to 129230579 24621 - unclassified gene RIKEN cDNA 9830144P21 gene
A730036I17Rik 2 129218969 to 129235604 16635 + lincRNA gene RIKEN cDNA A730036I17 gene
Tssr650 2 129225464 to 129225466 2 + TSS region transcription start site region 650
Tssr20108 2 129228024 to 129228045 21 + TSS region transcription start site region 20108
Tssr20109 2 129246357 to 129246361 4 + TSS region transcription start site region 20109
Gm14024 2 129246376 to 129268526 22150 + antisense lncRNA gene predicted gene 14024
Ckap2l 2 129268210 to 129297212 29002 - protein coding gene cytoskeleton associated protein 2-like
Tssr26195 2 129288902 to 129288903 1 - TSS region transcription start site region 26195
Cpgi12249 2 129296701 to 129297514 813 CpG island CpG island 12249
Tssr26196 2 129297148 to 129297201 53 - TSS region transcription start site region 26196
Tssr26197 2 129297205 to 129297216 11 - TSS region transcription start site region 26197
Tssr26198 2 129297224 to 129297231 7 - TSS region transcription start site region 26198
Tssr20110 2 129297361 to 129297376 15 + TSS region transcription start site region 20110
Gm14023 2 129297370 to 129307826 10456 + lncRNA gene predicted gene 14023
Il1a 2 129299610 to 129309972 10362 - protein coding gene interleukin 1 alpha
Tssr26199 2 129299807 to 129299817 10 - TSS region transcription start site region 26199
Tssr26200 2 129299848 to 129299868 20 - TSS region transcription start site region 26200
Tssr26201 2 129299914 to 129299987 73 - TSS region transcription start site region 26201
Tssr26202 2 129299991 to 129300050 59 - TSS region transcription start site region 26202
Tssr26203 2 129300054 to 129300072 18 - TSS region transcription start site region 26203
Tssr26204 2 129300162 to 129300177 15 - TSS region transcription start site region 26204
Tssr26205 2 129300191 to 129300230 39 - TSS region transcription start site region 26205
Tssr26206 2 129300245 to 129300262 17 - TSS region transcription start site region 26206
Tssr26207 2 129300337 to 129300340 3 - TSS region transcription start site region 26207
Tssr20111 2 129300433 to 129300444 11 + TSS region transcription start site region 20111
Tssr26208 2 129300529 to 129300568 39 - TSS region transcription start site region 26208
Tssr26209 2 129300615 to 129300649 34 - TSS region transcription start site region 26209
Tssr26210 2 129300730 to 129300766 36 - TSS region transcription start site region 26210
Tssr26211 2 129300880 to 129300903 23 - TSS region transcription start site region 26211
Tssr26212 2 129300939 to 129300946 7 - TSS region transcription start site region 26212
Tssr26213 2 129301546 to 129301549 3 - TSS region transcription start site region 26213
Tssr26214 2 129302955 to 129302971 16 - TSS region transcription start site region 26214
Tssr26215 2 129302978 to 129302990 12 - TSS region transcription start site region 26215
Tssr26216 2 129303764 to 129303785 21 - TSS region transcription start site region 26216
Tssr26217 2 129303794 to 129303807 13 - TSS region transcription start site region 26217
Tssr26218 2 129304713 to 129304727 14 - TSS region transcription start site region 26218
Tssr26219 2 129304764 to 129304776 12 - TSS region transcription start site region 26219
Tssr26220 2 129304794 to 129304808 14 - TSS region transcription start site region 26220
Tssr26221 2 129304813 to 129304855 42 - TSS region transcription start site region 26221