Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:128310568-130920581

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544 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr28a 2 103265371 to 129371085 26105714 QTL leishmaniasis resistance 28a
Actre3 2 112194642 to 128331901 16137259 QTL activity response to ethanol 3
Actre4 2 112194642 to 128331901 16137259 QTL activity response to ethanol 4
Morrbid 2 128298663 to 128429351 130688 - lincRNA gene myeloid RNA regulator of BCL2L11 induced cell death
Tssr26157 2 128318879 to 128318889 10 - TSS region transcription start site region 26157
Tssr643 2 128319211 to 128319243 32 + TSS region transcription start site region 643
Lgth2 2 128331784 to 128331901 117 QTL body length 2
Pcfm2 2 128331784 to 128331901 117 QTL periosteal circumference and femur length 2
D2Mit304 2 128331784 to 128331901 117 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 304
Gnf4 2 128331784 to 132872237 4540453 QTL growth and fatness 4
Skmw9 2 128331784 to 128331901 117 QTL skeletal muscle weight 9
Hrq1 2 128331784 to 128331901 117 QTL heart rate QTL 1
D2Dcr73 2 128331811 to 128331905 94 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 73
Tssr26158 2 128339489 to 128339491 2 - TSS region transcription start site region 26158
Tssr20055 2 128339901 to 128339914 13 + TSS region transcription start site region 20055
Tssr20056 2 128364416 to 128364439 23 + TSS region transcription start site region 20056
Tssr26159 2 128382607 to 128382621 14 - TSS region transcription start site region 26159
Tssr26160 2 128405259 to 128405270 11 - TSS region transcription start site region 26160
Tssr644 2 128406473 to 128406477 4 - TSS region transcription start site region 644
Tssr26161 2 128406636 to 128406640 4 - TSS region transcription start site region 26161
Tssr26162 2 128422218 to 128422241 23 - TSS region transcription start site region 26162
Gm14010 2 128423654 to 128424565 911 + lincRNA gene predicted gene 14010
Tssr20057 2 128428327 to 128428351 24 + TSS region transcription start site region 20057
Tssr645 2 128428916 to 128428933 17 - TSS region transcription start site region 645
Tssr26163 2 128429073 to 128429091 18 - TSS region transcription start site region 26163
Tssr26164 2 128429141 to 128429146 5 - TSS region transcription start site region 26164
Tssr26165 2 128429157 to 128429166 9 - TSS region transcription start site region 26165
Tssr26166 2 128429177 to 128429226 49 - TSS region transcription start site region 26166
Tssr26167 2 128429236 to 128429259 23 - TSS region transcription start site region 26167
Tssr26168 2 128429317 to 128429362 45 - TSS region transcription start site region 26168
Tssr26169 2 128429385 to 128429399 14 - TSS region transcription start site region 26169
Tssr646 2 128429480 to 128429490 10 + TSS region transcription start site region 646
Tssr647 2 128429547 to 128429579 32 + TSS region transcription start site region 647
Gm36154 2 128430437 to 128466515 36078 - lncRNA gene predicted gene, 36154
Gm29010 2 128433723 to 128460051 26328 + lincRNA gene predicted gene 29010
Tssr26170 2 128466468 to 128466478 10 - TSS region transcription start site region 26170
Tssr26171 2 128467513 to 128467522 9 - TSS region transcription start site region 26171
Tssr26172 2 128467525 to 128467531 6 - TSS region transcription start site region 26172
Gm39928 2 128490600 to 128549717 59117 - lncRNA gene predicted gene, 39928
Gm39927 2 128520024 to 128521888 1864 - lncRNA gene predicted gene, 39927
Gm14006 2 128557254 to 128558234 980 - pseudogene predicted gene 14006
Gm36203 2 128570156 to 128591162 21006 - lncRNA gene predicted gene, 36203
Gm14008 2 128587895 to 128588168 273 - pseudogene predicted gene 14008
Tssr20058 2 128591205 to 128591223 18 + TSS region transcription start site region 20058
Spdye4c 2 128591209 to 128598464 7255 + protein coding gene speedy/RINGO cell cycle regulator family, member E4C
Tssr20059 2 128591233 to 128591244 11 + TSS region transcription start site region 20059
Gm39929 2 128601515 to 128605384 3869 - lincRNA gene predicted gene, 39929
Gm14007 2 128606985 to 128607194 209 + pseudogene predicted gene 14007
Anapc1 2 128610104 to 128687391 77287 - protein coding gene anaphase promoting complex subunit 1
Cpgi12236 2 128686650 to 128687552 902 CpG island CpG island 12236
Tssr26173 2 128687357 to 128687396 39 - TSS region transcription start site region 26173
Tssr26174 2 128687400 to 128687411 11 - TSS region transcription start site region 26174
Gm39931 2 128687756 to 128698922 11166 - lncRNA gene predicted gene, 39931
Cpgi12237 2 128698725 to 128699612 887 CpG island CpG island 12237
Tssr20060 2 128698822 to 128698833 11 + TSS region transcription start site region 20060
Tssr20061 2 128698865 to 128698897 32 + TSS region transcription start site region 20061
Tssr20062 2 128698903 to 128698924 21 + TSS region transcription start site region 20062
Mertk 2 128698956 to 128802894 103938 + protein coding gene MER proto-oncogene tyrosine kinase
Tssr20063 2 128704801 to 128704819 18 + TSS region transcription start site region 20063
Tssr20064 2 128708716 to 128708734 18 + TSS region transcription start site region 20064
Tssr20065 2 128708756 to 128708783 27 + TSS region transcription start site region 20065
D2Mit305.1 2 128709021 to 128709130 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 305.1
Tssr20066 2 128709055 to 128709065 10 + TSS region transcription start site region 20066
Tssr20067 2 128709091 to 128709107 16 + TSS region transcription start site region 20067
Chab1 2 128709108 to 128709243 135 QTL cholesterol absorption 1
D2Mit305 2 128709108 to 128709243 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 305
Tssr20068 2 128729291 to 128729305 14 + TSS region transcription start site region 20068
Tssr20069 2 128738266 to 128738277 11 + TSS region transcription start site region 20069
Gm14011 2 128751271 to 128753705 2434 - antisense lncRNA gene predicted gene 14011
Tssr648 2 128751901 to 128751934 33 + TSS region transcription start site region 648
Tssr20070 2 128761814 to 128761818 4 + TSS region transcription start site region 20070
Tssr20071 2 128769218 to 128769224 6 + TSS region transcription start site region 20071
Gm23172 2 128780376 to 128780499 123 + snoRNA gene predicted gene, 23172
Nsv1 2 128781466 to 128781606 140 QTL Neuroadapted Sindbis viral RNA level 1
nmf62 2 128781466 to 148620946 19839480 heritable phenotypic marker neuroscience mutagenesis facility, 62
D2Mit447 2 128781466 to 128781606 140 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 447
Nmf220 2 128781606 to 80175610 -48605996 heritable phenotypic marker neuroscience mutagenesis facility, 220
Tssr20072 2 128792373 to 128792392 19 + TSS region transcription start site region 20072
Tssr20073 2 128796917 to 128796935 18 + TSS region transcription start site region 20073
Tssr20074 2 128796941 to 128796972 31 + TSS region transcription start site region 20074
Tssr20075 2 128798044 to 128798048 4 + TSS region transcription start site region 20075
Tssr20076 2 128801811 to 128801822 11 + TSS region transcription start site region 20076
Tssr20077 2 128801863 to 128801872 9 + TSS region transcription start site region 20077
Tssr20078 2 128802296 to 128802308 12 + TSS region transcription start site region 20078
Tssr20079 2 128802313 to 128802326 13 + TSS region transcription start site region 20079
Tssr20080 2 128802380 to 128802398 18 + TSS region transcription start site region 20080
Tssr26175 2 128802675 to 128802680 5 - TSS region transcription start site region 26175
Cpgi12238 2 128817857 to 128818899 1042 CpG island CpG island 12238
Tssr20081 2 128818104 to 128818135 31 + TSS region transcription start site region 20081
Tmem87b 2 128818118 to 128854261 36143 + protein coding gene transmembrane protein 87B
Tssr20082 2 128818295 to 128818351 56 + TSS region transcription start site region 20082
Tssr26176 2 128819077 to 128819097 20 - TSS region transcription start site region 26176
Tssr20083 2 128819502 to 128819506 4 + TSS region transcription start site region 20083
Tssr20084 2 128820698 to 128820718 20 + TSS region transcription start site region 20084
Tssr20085 2 128833717 to 128833721 4 + TSS region transcription start site region 20085
Tssr20086 2 128845577 to 128845583 6 + TSS region transcription start site region 20086
Tssr20087 2 128862947 to 128862958 11 + TSS region transcription start site region 20087
Cpgi12239 2 128863727 to 128864367 640 CpG island CpG island 12239
Fbln7 2 128863855 to 128897034 33179 + protein coding gene fibulin 7
Tssr20088 2 128863921 to 128863999 78 + TSS region transcription start site region 20088
Tssr20089 2 128864008 to 128864021 13 + TSS region transcription start site region 20089
Cpgi12240 2 128892206 to 128892656 450 CpG island CpG island 12240
Gm46763 2 128907296 to 128923214 15918 - lncRNA gene predicted gene, 46763
Tssr20090 2 128924904 to 128924905 1 + TSS region transcription start site region 20090
Gm22859 2 128925571 to 128925692 121 - miRNA gene predicted gene, 22859
Zc3h8 2 128926268 to 128944077 17809 - protein coding gene zinc finger CCCH type containing 8
Cpgi12241 2 128943528 to 128944321 793 CpG island CpG island 12241
Tssr26177 2 128943960 to 128943976 16 - TSS region transcription start site region 26177
Tssr26178 2 128943985 to 128944034 49 - TSS region transcription start site region 26178
Gm14028 2 128952972 to 128953450 478 - pseudogene predicted gene 14028
4933427J07Rik 2 128955671 to 128957861 2190 - antisense lncRNA gene RIKEN cDNA 4933427J07 gene
Gm10762 2 128966593 to 128967725 1132 - protein coding gene predicted gene 10762
Cpgi12242 2 128966957 to 128968571 1614 CpG island CpG island 12242
Tssr26179 2 128967233 to 128967262 29 - TSS region transcription start site region 26179
Tssr20091 2 128967349 to 128967380 31 + TSS region transcription start site region 20091
Tssr20092 2 128967383 to 128967443 60 + TSS region transcription start site region 20092
Zc3h6 2 128967402 to 129018563 51161 + protein coding gene zinc finger CCCH type containing 6
Tssr20093 2 128967778 to 128967811 33 + TSS region transcription start site region 20093
Tssr26180 2 128967996 to 128968030 34 - TSS region transcription start site region 26180
Tssr26181 2 128968043 to 128968064 21 - TSS region transcription start site region 26181
Tssr26182 2 128968225 to 128968241 16 - TSS region transcription start site region 26182
Gm14027 2 129016952 to 129021756 4804 + unclassified non-coding RNA gene predicted gene 14027
Tssr26183 2 129019684 to 129019687 3 - TSS region transcription start site region 26183
Vinac1 2 129025073 to 129048172 23099 - protein coding gene vinculin/alpha-catenin family member 1
4930402C16Rik 2 129038545 to 129039979 1434 unclassified gene RIKEN cDNA 4930402C16 gene
Cpgi12243 2 129038708 to 129039668 960 CpG island CpG island 12243
Tssr26184 2 129055810 to 129055817 7 - TSS region transcription start site region 26184
Gm14022 2 129060946 to 129065686 4740 - unclassified non-coding RNA gene predicted gene 14022
Cpgi12244 2 129065347 to 129066608 1261 CpG island CpG island 12244
Tssr26185 2 129065900 to 129065916 16 - TSS region transcription start site region 26185
Tssr20094 2 129065934 to 129065994 60 + TSS region transcription start site region 20094
Ttl 2 129065947 to 129096283 30336 + protein coding gene tubulin tyrosine ligase
Tssr20095 2 129066003 to 129066015 12 + TSS region transcription start site region 20095
D2Mit399.2 2 129089728 to 129089839 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 399.2
D2Mit399.1 2 129089906 to 129090015 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 399.1
Gm46764 2 129094408 to 129100949 6541 - lncRNA gene predicted gene, 46764
Cpgi12245 2 129100870 to 129101326 456 CpG island CpG island 12245
Tssr26186 2 129100907 to 129100957 50 - TSS region transcription start site region 26186
Tssr20096 2 129100982 to 129100989 7 + TSS region transcription start site region 20096
Polr1b 2 129100995 to 129126594 25599 + protein coding gene polymerase (RNA) I polypeptide B
Tssr20097 2 129101000 to 129101066 66 + TSS region transcription start site region 20097
Tssr20098 2 129101074 to 129101083 9 + TSS region transcription start site region 20098
Tssr20099 2 129122884 to 129122886 2 + TSS region transcription start site region 20099
Tssr20100 2 129123064 to 129123069 5 + TSS region transcription start site region 20100
Cpgi12246 2 129127216 to 129127393 177 CpG island CpG island 12246
Cpgi12247 2 129129242 to 129130080 838 CpG island CpG island 12247
Chchd5 2 129129700 to 129134112 4412 + protein coding gene coiled-coil-helix-coiled-coil-helix domain containing 5
Tssr20101 2 129129782 to 129129791 9 + TSS region transcription start site region 20101
Tssr20102 2 129129797 to 129129831 34 + TSS region transcription start site region 20102
Tssr20103 2 129130152 to 129130171 19 + TSS region transcription start site region 20103
Gm14026 2 129168700 to 129170488 1788 + pseudogene predicted gene 14026
Tssr26187 2 129174826 to 129174827 1 - TSS region transcription start site region 26187
AI847159 2 129178148 to 129180673 2525 - antisense lncRNA gene expressed sequence AI847159
Tssr26188 2 129180638 to 129180659 21 - TSS region transcription start site region 26188
Tssr26189 2 129180662 to 129180671 9 - TSS region transcription start site region 26189
Gm14029 2 129182482 to 129183947 1465 - antisense lncRNA gene predicted gene 14029
Gm39932 2 129182673 to 129193314 10641 + lncRNA gene predicted gene, 39932
Tssr26190 2 129183777 to 129183838 61 - TSS region transcription start site region 26190
Gm4430 2 129196086 to 129197126 1040 - unclassified gene predicted gene 4430
Tssr20104 2 129196587 to 129196619 32 + TSS region transcription start site region 20104
Cpgi12248 2 129198078 to 129199594 1516 CpG island CpG island 12248
Tssr649 2 129198502 to 129198513 11 - TSS region transcription start site region 649
Tssr26191 2 129198548 to 129198564 16 - TSS region transcription start site region 26191
Tssr26192 2 129198568 to 129198588 20 - TSS region transcription start site region 26192
Tssr20105 2 129198757 to 129198769 12 + TSS region transcription start site region 20105
Slc20a1 2 129198773 to 129211615 12842 + protein coding gene solute carrier family 20, member 1
Tssr20106 2 129198793 to 129198811 18 + TSS region transcription start site region 20106
Tssr26193 2 129199181 to 129199197 16 - TSS region transcription start site region 26193
Tssr26194 2 129199205 to 129199267 62 - TSS region transcription start site region 26194
Tssr20107 2 129205206 to 129205210 4 + TSS region transcription start site region 20107
9830144P21Rik 2 129205958 to 129230579 24621 - unclassified gene RIKEN cDNA 9830144P21 gene
A730036I17Rik 2 129218969 to 129235604 16635 + lincRNA gene RIKEN cDNA A730036I17 gene
Tssr650 2 129225464 to 129225466 2 + TSS region transcription start site region 650
Tssr20108 2 129228024 to 129228045 21 + TSS region transcription start site region 20108
Tssr20109 2 129246357 to 129246361 4 + TSS region transcription start site region 20109
Gm14024 2 129246376 to 129268526 22150 + antisense lncRNA gene predicted gene 14024
Ckap2l 2 129268210 to 129297212 29002 - protein coding gene cytoskeleton associated protein 2-like
Tssr26195 2 129288902 to 129288903 1 - TSS region transcription start site region 26195
Cpgi12249 2 129296701 to 129297514 813 CpG island CpG island 12249
Tssr26196 2 129297148 to 129297201 53 - TSS region transcription start site region 26196
Tssr26197 2 129297205 to 129297216 11 - TSS region transcription start site region 26197
Tssr26198 2 129297224 to 129297231 7 - TSS region transcription start site region 26198
Tssr20110 2 129297361 to 129297376 15 + TSS region transcription start site region 20110
Gm14023 2 129297370 to 129307826 10456 + lncRNA gene predicted gene 14023
Il1a 2 129299610 to 129309972 10362 - protein coding gene interleukin 1 alpha
Tssr26199 2 129299807 to 129299817 10 - TSS region transcription start site region 26199
Tssr26200 2 129299848 to 129299868 20 - TSS region transcription start site region 26200
Tssr26201 2 129299914 to 129299987 73 - TSS region transcription start site region 26201
Tssr26202 2 129299991 to 129300050 59 - TSS region transcription start site region 26202
Tssr26203 2 129300054 to 129300072 18 - TSS region transcription start site region 26203
Tssr26204 2 129300162 to 129300177 15 - TSS region transcription start site region 26204
Tssr26205 2 129300191 to 129300230 39 - TSS region transcription start site region 26205
Tssr26206 2 129300245 to 129300262 17 - TSS region transcription start site region 26206
Tssr26207 2 129300337 to 129300340 3 - TSS region transcription start site region 26207
Tssr20111 2 129300433 to 129300444 11 + TSS region transcription start site region 20111
Tssr26208 2 129300529 to 129300568 39 - TSS region transcription start site region 26208
Tssr26209 2 129300615 to 129300649 34 - TSS region transcription start site region 26209
Tssr26210 2 129300730 to 129300766 36 - TSS region transcription start site region 26210
Tssr26211 2 129300880 to 129300903 23 - TSS region transcription start site region 26211
Tssr26212 2 129300939 to 129300946 7 - TSS region transcription start site region 26212