Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:122162614-122512838

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aabpr 2 116202748 to 122377053 6174305 QTL aberrant activation of B cell proliferation
Patl2 2 122120108 to 122186189 66081 - protein coding gene protein associated with topoisomerase II homolog 2 (yeast)
Trim69 2 122160700 to 122179027 18327 + protein coding gene tripartite motif-containing 69
Tssr19833 2 122186268 to 122186285 17 + TSS region transcription start site region 19833
Terb2 2 122186272 to 122206393 20121 + protein coding gene telomere repeat binding bouquet formation protein 2
Cpgi12170 2 122186278 to 122186562 284 CpG island CpG island 12170
Gm14050 2 122207920 to 122208265 345 + pseudogene predicted gene 14050
Gm14058 2 122214620 to 122215354 734 - pseudogene predicted gene 14058
Tssr25960 2 122215355 to 122215376 21 - TSS region transcription start site region 25960
Rps12-ps10 2 122219993 to 122220391 398 + pseudogene ribosomal protein S12, pseudogene 10
Cpgi12171 2 122234513 to 122234990 477 CpG island CpG island 12171
Tssr19834 2 122234778 to 122234822 44 + TSS region transcription start site region 19834
Tssr19835 2 122234833 to 122234841 8 + TSS region transcription start site region 19835
Sord 2 122234839 to 122265337 30498 + protein coding gene sorbitol dehydrogenase
Tssr19836 2 122258584 to 122258601 17 + TSS region transcription start site region 19836
Tssr19837 2 122264751 to 122264764 13 + TSS region transcription start site region 19837
Tssr19838 2 122264815 to 122264824 9 + TSS region transcription start site region 19838
Tssr19839 2 122264854 to 122264874 20 + TSS region transcription start site region 19839
Duox2 2 122279247 to 122298165 18918 - protein coding gene dual oxidase 2
Cpgi12172 2 122297403 to 122297828 425 CpG island CpG island 12172
Cpgi12173 2 122298265 to 122299193 928 CpG island CpG island 12173
Tssr25961 2 122298718 to 122298737 19 - TSS region transcription start site region 25961
Tssr19840 2 122298898 to 122298903 5 + TSS region transcription start site region 19840
Duoxa2 2 122298900 to 122302885 3985 + protein coding gene dual oxidase maturation factor 2
Cpgi12174 2 122300755 to 122302099 1344 CpG island CpG island 12174
Tssr19841 2 122301131 to 122301150 19 + TSS region transcription start site region 19841
Duoxa1 2 122303540 to 122313746 10206 - protein coding gene dual oxidase maturation factor 1
Tssr25962 2 122305621 to 122305628 7 - TSS region transcription start site region 25962
Tssr25963 2 122305671 to 122305680 9 - TSS region transcription start site region 25963
Tssr25964 2 122305706 to 122305715 9 - TSS region transcription start site region 25964
Tssr25965 2 122306365 to 122306375 10 - TSS region transcription start site region 25965
Cpgi12175 2 122312842 to 122313331 489 CpG island CpG island 12175
Cpgi12176 2 122313602 to 122313847 245 CpG island CpG island 12176
Tssr25966 2 122313714 to 122313736 22 - TSS region transcription start site region 25966
Tssr19842 2 122313789 to 122313806 17 + TSS region transcription start site region 19842
Tssr19843 2 122313826 to 122313835 9 + TSS region transcription start site region 19843
Duox1 2 122315672 to 122347972 32300 + protein coding gene dual oxidase 1
Cpgi12177 2 122337614 to 122337838 224 CpG island CpG island 12177
Cpgi12178 2 122348197 to 122349408 1211 CpG island CpG island 12178
Shf 2 122348892 to 122369162 20270 - protein coding gene Src homology 2 domain containing F
Cpgi12179 2 122368390 to 122369748 1358 CpG island CpG island 12179
Tssr25967 2 122369130 to 122369154 24 - TSS region transcription start site region 25967
Tssr627 2 122369165 to 122369166 1 - TSS region transcription start site region 627
Gm39918 2 122369242 to 122389004 19762 + lncRNA gene predicted gene, 39918
Cpgi12180 2 122375457 to 122376464 1007 CpG island CpG island 12180
n-THgtg4 2 122375494 to 122375565 71 - tRNA gene nuclear encoded tRNA histidine 4 (anticodon GTG)
Tssr19844 2 122375694 to 122375721 27 + TSS region transcription start site region 19844
El2 2 122376665 to 142690215 20313550 QTL epilepsy 2
D2Mit30 2 122376665 to 122377053 388 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 30
Cpgi12181 2 122377307 to 122378216 909 CpG island CpG island 12181
n-THgtg3 2 122377363 to 122377434 71 - tRNA gene nuclear encoded tRNA histidine 3 (anticodon GTG)
Tssr19845 2 122377575 to 122377597 22 + TSS region transcription start site region 19845
n-THgtg5 2 122377968 to 122378039 71 + tRNA gene nuclear encoded tRNA histidine 5 (anticodon GTG)
Tssr19846 2 122382937 to 122382952 15 + TSS region transcription start site region 19846
Gm24409 2 122385489 to 122385640 151 - snRNA gene predicted gene, 24409
Tssr25968 2 122396215 to 122396217 2 - TSS region transcription start site region 25968
Tssr19847 2 122426432 to 122426461 29 + TSS region transcription start site region 19847
Slc28a2 2 122426477 to 122461137 34660 + protein coding gene solute carrier family 28 (sodium-coupled nucleoside transporter), member 2
Gm14086 2 122427194 to 122427469 275 + pseudogene predicted gene 14086
Bambi-ps1 2 122466935 to 122467526 591 - pseudogene BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)
Cpgi12182 2 122467152 to 122468198 1046 CpG island CpG island 12182
Tssr25969 2 122467724 to 122467750 26 - TSS region transcription start site region 25969
Tssr25970 2 122469131 to 122469138 7 - TSS region transcription start site region 25970
Gm14085 2 122484941 to 122528040 43099 + protein coding gene predicted gene 14085