Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:121466988-122147018

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mfap1b 2 121461666 to 121474023 12357 - protein coding gene microfibrillar-associated protein 1B
Cpgi12161 2 121473953 to 121474156 203 CpG island CpG island 12161
Tssr25938 2 121473993 to 121474037 44 - TSS region transcription start site region 25938
Tssr25939 2 121474041 to 121474048 7 - TSS region transcription start site region 25939
Gm14017 2 121481130 to 121481515 385 + pseudogene predicted gene 14017
Gm14018 2 121485432 to 121491512 6080 + pseudogene predicted gene 14018
Mfap1a 2 121492681 to 121506656 13975 - protein coding gene microfibrillar-associated protein 1A
Cpgi12162 2 121506581 to 121506854 273 CpG island CpG island 12162
Tssr25940 2 121506639 to 121506667 28 - TSS region transcription start site region 25940
Tssr19775 2 121506702 to 121506709 7 + TSS region transcription start site region 19775
Tssr19776 2 121506715 to 121506733 18 + TSS region transcription start site region 19776
Wdr76 2 121506723 to 121544860 38137 + protein coding gene WD repeat domain 76
Tssr19777 2 121506748 to 121506792 44 + TSS region transcription start site region 19777
Tssr19778 2 121509819 to 121509846 27 + TSS region transcription start site region 19778
Tssr19779 2 121509856 to 121509862 6 + TSS region transcription start site region 19779
Tssr25941 2 121541962 to 121541966 4 - TSS region transcription start site region 25941
Tssr19780 2 121544439 to 121544444 5 + TSS region transcription start site region 19780
Frmd5 2 121545529 to 121807087 261558 - protein coding gene FERM domain containing 5
Tssr25942 2 121549614 to 121549621 7 - TSS region transcription start site region 25942
Tssr25943 2 121551264 to 121551275 11 - TSS region transcription start site region 25943
Tssr25944 2 121551277 to 121551286 9 - TSS region transcription start site region 25944
Tssr25945 2 121551353 to 121551376 23 - TSS region transcription start site region 25945
Tssr25946 2 121551383 to 121551419 36 - TSS region transcription start site region 25946
Tssr25947 2 121569516 to 121569518 2 - TSS region transcription start site region 25947
Tssr19781 2 121621417 to 121621426 9 + TSS region transcription start site region 19781
Gm14021 2 121700765 to 121701725 960 - pseudogene predicted gene 14021
Tssr19782 2 121718505 to 121718509 4 + TSS region transcription start site region 19782
Gm14020 2 121718530 to 121719191 661 + pseudogene predicted gene 14020
4930402M22Rik 2 121778615 to 121779736 1121 unclassified gene RIKEN cDNA 4930402M22 gene
Tssr19783 2 121793636 to 121793638 2 + TSS region transcription start site region 19783
Cpgi12163 2 121806100 to 121807604 1504 CpG island CpG island 12163
Tssr19784 2 121806331 to 121806341 10 + TSS region transcription start site region 19784
Tssr25948 2 121806988 to 121807018 30 - TSS region transcription start site region 25948
Tssr25949 2 121807024 to 121807045 21 - TSS region transcription start site region 25949
Gm14019 2 121865781 to 121866717 936 - antisense lncRNA gene predicted gene 14019
Cpgi12164 2 121865996 to 121866237 241 CpG island CpG island 12164
Tssr19785 2 121866420 to 121866432 12 + TSS region transcription start site region 19785
Cpgi12165 2 121866429 to 121867834 1405 CpG island CpG island 12165
Tssr19786 2 121866918 to 121866997 79 + TSS region transcription start site region 19786
Casc4 2 121866970 to 121936220 69250 + protein coding gene cancer susceptibility candidate 4
Tssr19787 2 121867083 to 121867159 76 + TSS region transcription start site region 19787
Gm23983 2 121891571 to 121891684 113 - rRNA gene predicted gene, 23983
Tssr19788 2 121901188 to 121901220 32 + TSS region transcription start site region 19788
Tssr19789 2 121934751 to 121934777 26 + TSS region transcription start site region 19789
Tssr19790 2 121934823 to 121934842 19 + TSS region transcription start site region 19790
Gm39916 2 121937318 to 121943981 6663 - lncRNA gene predicted gene, 39916
Mageb3 2 121953771 to 121956092 2321 - protein coding gene melanoma antigen, family B, 3
Cpgi12166 2 121955623 to 121956939 1316 CpG island CpG island 12166
Tssr19791 2 121955964 to 121955982 18 + TSS region transcription start site region 19791
Ctdspl2 2 121956001 to 122013642 57641 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
Tssr19792 2 121956135 to 121956165 30 + TSS region transcription start site region 19792
Tssr19793 2 121956437 to 121956480 43 + TSS region transcription start site region 19793
Tssr19794 2 121956651 to 121956664 13 + TSS region transcription start site region 19794
Tssr625 2 121985677 to 121985682 5 + TSS region transcription start site region 625
Tssr19795 2 121987978 to 121987982 4 + TSS region transcription start site region 19795
Tssr19796 2 122000658 to 122000663 5 + TSS region transcription start site region 19796
Tssr19797 2 122014805 to 122014809 4 + TSS region transcription start site region 19797
Cpgi12167 2 122028007 to 122029375 1368 CpG island CpG island 12167
Tssr19798 2 122028121 to 122028147 26 + TSS region transcription start site region 19798
Tssr19799 2 122028544 to 122028563 19 + TSS region transcription start site region 19799
Eif3j1 2 122028580 to 122053632 25052 + protein coding gene eukaryotic translation initiation factor 3, subunit J1
Tssr19800 2 122028586 to 122028598 12 + TSS region transcription start site region 19800
Tssr19801 2 122028601 to 122028664 63 + TSS region transcription start site region 19801
Gm47314 2 122028642 to 122028709 67 + miRNA gene predicted gene, 47314
Spg11 2 122053520 to 122118386 64866 - protein coding gene SPG11, spatacsin vesicle trafficking associated
5830407F19Rik 2 122098497 to 122100333 1836 unclassified gene RIKEN cDNA 5830407F19 gene
Tssr19802 2 122116924 to 122116935 11 + TSS region transcription start site region 19802
Cpgi12168 2 122117957 to 122118596 639 CpG island CpG island 12168
Tssr25950 2 122118317 to 122118349 32 - TSS region transcription start site region 25950
Tssr25951 2 122118364 to 122118397 33 - TSS region transcription start site region 25951
Tssr19803 2 122118539 to 122118554 15 + TSS region transcription start site region 19803
Patl2 2 122120108 to 122186189 66081 - protein coding gene protein associated with topoisomerase II homolog 2 (yeast)
Tssr25952 2 122125813 to 122125828 15 - TSS region transcription start site region 25952
Tssr25953 2 122146954 to 122146957 3 - TSS region transcription start site region 25953