Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:121249273-121469278

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trp53bp1 2 121193281 to 121271407 78126 - protein coding gene transformation related protein 53 binding protein 1
Cpgi12152 2 121270828 to 121271689 861 CpG island CpG island 12152
Tssr25917 2 121271315 to 121271322 7 - TSS region transcription start site region 25917
Tssr25918 2 121271355 to 121271397 42 - TSS region transcription start site region 25918
Tssr25919 2 121271403 to 121271410 7 - TSS region transcription start site region 25919
Cpgi12153 2 121289095 to 121290301 1206 CpG island CpG island 12153
Tssr19737 2 121289589 to 121289606 17 + TSS region transcription start site region 19737
Map1a 2 121289601 to 121310832 21231 + protein coding gene microtubule-associated protein 1 A
Tssr19738 2 121289699 to 121289710 11 + TSS region transcription start site region 19738
Tssr19739 2 121289722 to 121289736 14 + TSS region transcription start site region 19739
Tssr25920 2 121290298 to 121290309 11 - TSS region transcription start site region 25920
Gm14978 2 121293703 to 121296008 2305 - antisense lncRNA gene predicted gene 14978
Tssr19740 2 121295437 to 121295486 49 + TSS region transcription start site region 19740
D2Mit445 2 121297613 to 121297733 120 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 445
D2Dcr65 2 121297616 to 121297752 136 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 65
Tssr19741 2 121298592 to 121298608 16 + TSS region transcription start site region 19741
Tssr19742 2 121299483 to 121299501 18 + TSS region transcription start site region 19742
Cpgi12154 2 121299589 to 121299856 267 CpG island CpG island 12154
Tssr19743 2 121300363 to 121300374 11 + TSS region transcription start site region 19743
Tssr19744 2 121300633 to 121300642 9 + TSS region transcription start site region 19744
Tssr25921 2 121300667 to 121300737 70 - TSS region transcription start site region 25921
Tssr19745 2 121300942 to 121300956 14 + TSS region transcription start site region 19745
Tssr25922 2 121301265 to 121301298 33 - TSS region transcription start site region 25922
Tssr19746 2 121303394 to 121303406 12 + TSS region transcription start site region 19746
Tssr19747 2 121303409 to 121303421 12 + TSS region transcription start site region 19747
Tssr19748 2 121303725 to 121303743 18 + TSS region transcription start site region 19748
Tssr19749 2 121305985 to 121305991 6 + TSS region transcription start site region 19749
Ppip5k1 2 121310561 to 121355396 44835 - protein coding gene diphosphoinositol pentakisphosphate kinase 1
Tssr25923 2 121313741 to 121313745 4 - TSS region transcription start site region 25923
Tssr25924 2 121314731 to 121314734 3 - TSS region transcription start site region 25924
Cpgi12155 2 121354698 to 121355549 851 CpG island CpG island 12155
Tssr25925 2 121355066 to 121355084 18 - TSS region transcription start site region 25925
Tssr25926 2 121355320 to 121355367 47 - TSS region transcription start site region 25926
Ckmt1 2 121357751 to 121363737 5986 + protein coding gene creatine kinase, mitochondrial 1, ubiquitous
Tssr19750 2 121357768 to 121357782 14 + TSS region transcription start site region 19750
Gm33947 2 121357815 to 121358271 456 - lncRNA gene predicted gene, 33947
Cpgi12156 2 121358541 to 121359003 462 CpG island CpG island 12156
Tssr19751 2 121358591 to 121358713 122 + TSS region transcription start site region 19751
Tssr622 2 121358881 to 121358884 3 + TSS region transcription start site region 622
Tssr19752 2 121359273 to 121359278 5 + TSS region transcription start site region 19752
Tssr19753 2 121359558 to 121359569 11 + TSS region transcription start site region 19753
Strc 2 121363248 to 121381370 18122 - protein coding gene stereocilin
D2Mit134 2 121363292 to 121363495 203 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 134
Tssr19754 2 121363661 to 121363670 9 + TSS region transcription start site region 19754
Tssr25927 2 121380931 to 121380938 7 - TSS region transcription start site region 25927
Tssr25928 2 121380941 to 121380947 6 - TSS region transcription start site region 25928
Tssr25929 2 121380959 to 121380975 16 - TSS region transcription start site region 25929
Catsper2 2 121392631 to 121413792 21161 - protein coding gene cation channel, sperm associated 2
Gm14001 2 121401145 to 121401391 246 - pseudogene predicted gene 14001
Tssr623 2 121405146 to 121405147 1 + TSS region transcription start site region 623
Gm14000 2 121405241 to 121405473 232 + pseudogene predicted gene 14000
Tssr25930 2 121410004 to 121410009 5 - TSS region transcription start site region 25930
Tssr25931 2 121413051 to 121413055 4 - TSS region transcription start site region 25931
Cpgi12157 2 121413272 to 121414574 1302 CpG island CpG island 12157
Tssr25932 2 121413772 to 121413777 5 - TSS region transcription start site region 25932
Tssr25933 2 121413780 to 121413814 34 - TSS region transcription start site region 25933
Tssr25934 2 121413825 to 121413836 11 - TSS region transcription start site region 25934
Pdia3 2 121413902 to 121438687 24785 + protein coding gene protein disulfide isomerase associated 3
Tssr624 2 121413927 to 121413930 3 + TSS region transcription start site region 624
Tssr19755 2 121413933 to 121413959 26 + TSS region transcription start site region 19755
Tssr19756 2 121413965 to 121413970 5 + TSS region transcription start site region 19756
Tssr19757 2 121414641 to 121414651 10 + TSS region transcription start site region 19757
Tssr19758 2 121422440 to 121422493 53 + TSS region transcription start site region 19758
Tssr19759 2 121424552 to 121424580 28 + TSS region transcription start site region 19759
Tssr19760 2 121424582 to 121424593 11 + TSS region transcription start site region 19760
Tssr19761 2 121429449 to 121429540 91 + TSS region transcription start site region 19761
Tssr19762 2 121430871 to 121430873 2 + TSS region transcription start site region 19762
Tssr19763 2 121431648 to 121431661 13 + TSS region transcription start site region 19763
Tssr19764 2 121432311 to 121432349 38 + TSS region transcription start site region 19764
Tssr19765 2 121433515 to 121433537 22 + TSS region transcription start site region 19765
Tssr19766 2 121433975 to 121434011 36 + TSS region transcription start site region 19766
Tssr19767 2 121435911 to 121435922 11 + TSS region transcription start site region 19767
Tssr19768 2 121436355 to 121436364 9 + TSS region transcription start site region 19768
Tssr19769 2 121437607 to 121437646 39 + TSS region transcription start site region 19769
Tssr19770 2 121437905 to 121437946 41 + TSS region transcription start site region 19770
Ell3 2 121439027 to 121442601 3574 - protein coding gene elongation factor RNA polymerase II-like 3
Cpgi12158 2 121442090 to 121442622 532 CpG island CpG island 12158
Tssr25935 2 121442574 to 121442614 40 - TSS region transcription start site region 25935
Cpgi12159 2 121448805 to 121450326 1521 CpG island CpG island 12159
Serf2 2 121449198 to 121453420 4222 + protein coding gene small EDRK-rich factor 2
Tssr19771 2 121449362 to 121449393 31 + TSS region transcription start site region 19771
Tssr25936 2 121450195 to 121450213 18 - TSS region transcription start site region 25936
Tssr19772 2 121450306 to 121450313 7 + TSS region transcription start site region 19772
Gm22953 2 121450670 to 121450770 100 - miRNA gene predicted gene, 22953
Serinc4 2 121451177 to 121456824 5647 - protein coding gene serine incorporator 4
Tssr25937 2 121456740 to 121456761 21 - TSS region transcription start site region 25937
Cpgi12160 2 121456945 to 121457369 424 CpG island CpG island 12160
Tssr19773 2 121457078 to 121457127 49 + TSS region transcription start site region 19773
Hypk 2 121457088 to 121458440 1352 + protein coding gene huntingtin interacting protein K
Tssr19774 2 121457437 to 121457491 54 + TSS region transcription start site region 19774
Mfap1b 2 121461666 to 121474023 12357 - protein coding gene microfibrillar-associated protein 1B