Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:118219551-118899556

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125 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fsip1 2 118130424 to 118256966 126542 - protein coding gene fibrous sheath-interacting protein 1
Gm22800 2 118248689 to 118248782 93 - miRNA gene predicted gene, 22800
Gm29232 2 118253255 to 118279430 26175 - unclassified non-coding RNA gene predicted gene 29232
Cpgi12076 2 118256628 to 118257040 412 CpG island CpG island 12076
Tssr25767 2 118256927 to 118256928 1 - TSS region transcription start site region 25767
Tssr25768 2 118256929 to 118256973 44 - TSS region transcription start site region 25768
A930104D05Rik 2 118270233 to 118276169 5936 - lincRNA gene RIKEN cDNA A930104D05 gene
4930451A11Rik 2 118271138 to 118271773 635 unclassified gene RIKEN cDNA 4930451A11 gene
Gpr176 2 118277110 to 118373419 96309 - protein coding gene G protein-coupled receptor 176
Tssr25769 2 118296926 to 118296938 12 - TSS region transcription start site region 25769
1700054M17Rik 2 118304914 to 118308166 3252 + antisense lncRNA gene RIKEN cDNA 1700054M17 gene
Tssr25770 2 118307676 to 118307684 8 - TSS region transcription start site region 25770
Tssr19553 2 118329036 to 118329042 6 + TSS region transcription start site region 19553
Gm22651 2 118351238 to 118351331 93 + rRNA gene predicted gene, 22651
Cpgi12077 2 118372724 to 118374303 1579 CpG island CpG island 12077
Tssr25771 2 118373309 to 118373341 32 - TSS region transcription start site region 25771
Tssr25772 2 118373347 to 118373379 32 - TSS region transcription start site region 25772
Tssr25773 2 118373985 to 118374007 22 - TSS region transcription start site region 25773
Cpgi12078 2 118388327 to 118388975 648 CpG island CpG island 12078
Tssr19554 2 118388590 to 118388606 16 + TSS region transcription start site region 19554
Tssr19555 2 118388615 to 118388640 25 + TSS region transcription start site region 19555
Eif2ak4 2 118388618 to 118475234 86616 + protein coding gene eukaryotic translation initiation factor 2 alpha kinase 4
Tssr19556 2 118388651 to 118388669 18 + TSS region transcription start site region 19556
Tssr19557 2 118388674 to 118388683 9 + TSS region transcription start site region 19557
Cpgi12079 2 118430792 to 118431249 457 CpG island CpG island 12079
D2Mit276 2 118442067 to 118442203 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 276
Tssr19558 2 118462597 to 118462600 3 + TSS region transcription start site region 19558
Srp14 2 118475843 to 118479696 3853 - protein coding gene signal recognition particle 14
Tssr25774 2 118479019 to 118479045 26 - TSS region transcription start site region 25774
Cpgi12080 2 118479073 to 118479910 837 CpG island CpG island 12080
Tssr25775 2 118479637 to 118479687 50 - TSS region transcription start site region 25775
Gm13983 2 118483313 to 118484177 864 - pseudogene predicted gene 13983
Gm32684 2 118498877 to 118501404 2527 + lncRNA gene predicted gene, 32684
Cpgi12081 2 118510447 to 118510739 292 CpG island CpG island 12081
Cfq7 2 118526291 to 125206952 6680661 QTL conditioned fear QTL 7
Bmf 2 118528757 to 118549678 20921 - protein coding gene BCL2 modifying factor
Tssr25776 2 118538990 to 118538995 5 - TSS region transcription start site region 25776
Cpgi12082 2 118544384 to 118544685 301 CpG island CpG island 12082
Tssr25777 2 118545162 to 118545169 7 - TSS region transcription start site region 25777
Tssr25778 2 118545310 to 118545344 34 - TSS region transcription start site region 25778
Tssr19559 2 118546743 to 118546752 9 + TSS region transcription start site region 19559
Tssr25779 2 118547018 to 118547042 24 - TSS region transcription start site region 25779
Tssr25780 2 118547541 to 118547567 26 - TSS region transcription start site region 25780
Cpgi12083 2 118548896 to 118549899 1003 CpG island CpG island 12083
Tssr25781 2 118549625 to 118549655 30 - TSS region transcription start site region 25781
Tssr25782 2 118549668 to 118549683 15 - TSS region transcription start site region 25782
Tssr19560 2 118559551 to 118559556 5 + TSS region transcription start site region 19560
Tssr19561 2 118560439 to 118560442 3 + TSS region transcription start site region 19561
D2Dcr62 2 118573426 to 118573540 114 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 62
D2Mit484 2 118573430 to 118573541 111 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 484
Gm14016 2 118594079 to 118594564 485 + pseudogene predicted gene 14016
Cpgi12084 2 118598025 to 118598630 605 CpG island CpG island 12084
Tssr19562 2 118598209 to 118598226 17 + TSS region transcription start site region 19562
Bub1b 2 118598211 to 118641591 43380 + protein coding gene BUB1B, mitotic checkpoint serine/threonine kinase
Tssr19563 2 118598232 to 118598267 35 + TSS region transcription start site region 19563
Tssr19564 2 118598271 to 118598300 29 + TSS region transcription start site region 19564
Tssr25783 2 118637526 to 118637564 38 - TSS region transcription start site region 25783
1700008N17Rik 2 118658819 to 118660069 1250 unclassified gene RIKEN cDNA 1700008N17 gene
Cpgi12085 2 118663220 to 118663553 333 CpG island CpG island 12085
Tssr19565 2 118663235 to 118663309 74 + TSS region transcription start site region 19565
Pak6 2 118663303 to 118698020 34717 + protein coding gene p21 (RAC1) activated kinase 6
Tssr19566 2 118663311 to 118663328 17 + TSS region transcription start site region 19566
Tssr19567 2 118663722 to 118663762 40 + TSS region transcription start site region 19567
Cpgi12086 2 118676655 to 118678047 1392 CpG island CpG island 12086
Tssr613 2 118677228 to 118677283 55 + TSS region transcription start site region 613
Cpgi12087 2 118696421 to 118696708 287 CpG island CpG island 12087
Ankrd63 2 118699103 to 118703963 4860 - protein coding gene ankyrin repeat domain 63
Cpgi12088 2 118700234 to 118700565 331 CpG island CpG island 12088
Cpgi12089 2 118702202 to 118704696 2494 CpG island CpG island 12089
Plcb2 2 118707517 to 118728438 20921 - protein coding gene phospholipase C, beta 2
Tssr25784 2 118709717 to 118709728 11 - TSS region transcription start site region 25784
Tssr19568 2 118709867 to 118709884 17 + TSS region transcription start site region 19568
Cpgi12090 2 118710847 to 118711673 826 CpG island CpG island 12090
Tssr25785 2 118715450 to 118715458 8 - TSS region transcription start site region 25785
Tssr25786 2 118715467 to 118715478 11 - TSS region transcription start site region 25786
Tssr25787 2 118723516 to 118723534 18 - TSS region transcription start site region 25787
Tssr614 2 118728325 to 118728336 11 - TSS region transcription start site region 614
Tssr25788 2 118728345 to 118728367 22 - TSS region transcription start site region 25788
Tssr25789 2 118728372 to 118728428 56 - TSS region transcription start site region 25789
Tssr25790 2 118728430 to 118728446 16 - TSS region transcription start site region 25790
Tssr25791 2 118728526 to 118728544 18 - TSS region transcription start site region 25791
Tssr25792 2 118728578 to 118728630 52 - TSS region transcription start site region 25792
Cpgi12091 2 118745084 to 118746956 1872 CpG island CpG island 12091
Tssr19569 2 118745738 to 118745773 35 + TSS region transcription start site region 19569
Inafm2 2 118745758 to 118748810 3052 + protein coding gene InaF motif containing 2
Tssr19570 2 118745777 to 118745799 22 + TSS region transcription start site region 19570
Tssr19571 2 118746985 to 118746989 4 + TSS region transcription start site region 19571
Tssr19572 2 118747263 to 118747265 2 + TSS region transcription start site region 19572
Ccdc9b 2 118754158 to 118762661 8503 - protein coding gene coiled-coil domain containing 9B
Pwbwq1 2 118758772 to 160769245 42010473 QTL pre-weaning body weight QTL 1
Pwgrq1 2 118758772 to 160769245 42010473 QTL pre-weaning growth rate QTL 1
Pwgrq2 2 118758772 to 160769245 42010473 QTL pre-weaning growth rate QTL 2
Pwbwq5 2 118758772 to 160769245 42010473 QTL post-weaning body weight QTL 5
Tssr25793 2 118762607 to 118762666 59 - TSS region transcription start site region 25793
Tssr19573 2 118772766 to 118772780 14 + TSS region transcription start site region 19573
Phgr1 2 118772769 to 118778164 5395 + protein coding gene proline/histidine/glycine-rich 1
D2Mit444 2 118774692 to 118774866 174 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 444
Cpgi12092 2 118779501 to 118780152 651 CpG island CpG island 12092
Tssr19574 2 118779690 to 118779701 11 + TSS region transcription start site region 19574
Disp2 2 118779702 to 118795175 15473 + protein coding gene dispatched RND tramsporter family member 2
Tssr19575 2 118779703 to 118779777 74 + TSS region transcription start site region 19575
Tssr19576 2 118779814 to 118779819 5 + TSS region transcription start site region 19576
Tssr19577 2 118779897 to 118779900 3 + TSS region transcription start site region 19577
Tssr19578 2 118786090 to 118786097 7 + TSS region transcription start site region 19578
Cpgi12093 2 118790290 to 118791033 743 CpG island CpG island 12093
Gm38629 2 118799999 to 118811178 11179 + lncRNA gene predicted gene, 38629
Cpgi12094 2 118813930 to 118814712 782 CpG island CpG island 12094
Knstrn 2 118813988 to 118837210 23222 + protein coding gene kinetochore-localized astrin/SPAG5 binding
Tssr19579 2 118813995 to 118814027 32 + TSS region transcription start site region 19579
Tssr19580 2 118814029 to 118814040 11 + TSS region transcription start site region 19580
Tssr19581 2 118814195 to 118814235 40 + TSS region transcription start site region 19581
Tssr19582 2 118814237 to 118814261 24 + TSS region transcription start site region 19582
Gm14091 2 118829874 to 118834122 4248 - antisense lncRNA gene predicted gene 14091
Tssr19583 2 118830022 to 118830027 5 + TSS region transcription start site region 19583
Tssr25794 2 118834157 to 118834196 39 - TSS region transcription start site region 25794
Gm39913 2 118837390 to 118861882 24492 - lncRNA gene predicted gene, 39913
Cpgi12095 2 118861837 to 118862276 439 CpG island CpG island 12095
Ivd 2 118861959 to 118882907 20948 + protein coding gene isovaleryl coenzyme A dehydrogenase
Tssr19584 2 118861986 to 118862008 22 + TSS region transcription start site region 19584
Tssr19585 2 118862009 to 118862022 13 + TSS region transcription start site region 19585
Tssr19586 2 118870375 to 118870402 27 + TSS region transcription start site region 19586
Cpgi12096 2 118883274 to 118883794 520 CpG island CpG island 12096
Gm32798 2 118887481 to 118894929 7448 + lncRNA gene predicted gene, 32798
Gm32957 2 118895347 to 118900288 4941 - lncRNA gene predicted gene, 32957
Cpgi12097 2 118896220 to 118897157 937 CpG island CpG island 12097