Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:116798039-117138173

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D2Mit189.2 2 116812833 to 116812957 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 189.2
D2Mit189 2 116812962 to 116813081 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 189
Gm13990 2 116848099 to 116877168 29069 - antisense lncRNA gene predicted gene 13990
Tssr19470 2 116878672 to 116878682 10 + TSS region transcription start site region 19470
Tssr19471 2 116878686 to 116878696 10 + TSS region transcription start site region 19471
Tmco5 2 116878691 to 116892494 13803 + protein coding gene transmembrane and coiled-coil domains 5
Tssr19472 2 116878698 to 116878743 45 + TSS region transcription start site region 19472
Gm46758 2 116893984 to 116905886 11902 - lncRNA gene predicted gene, 46758
Tssr19473 2 116899744 to 116899751 7 + TSS region transcription start site region 19473
D330050G23Rik 2 116900152 to 116912791 12639 + lincRNA gene RIKEN cDNA D330050G23 gene
Tssr19474 2 116900200 to 116900216 16 + TSS region transcription start site region 19474
Tssr19475 2 116914271 to 116914277 6 + TSS region transcription start site region 19475
Gm31906 2 116914702 to 116917648 2946 - lncRNA gene predicted gene, 31906
Tssr604 2 116925469 to 116925471 2 + TSS region transcription start site region 604
Gm24914 2 116963237 to 116963549 312 + unclassified non-coding RNA gene predicted gene, 24914
Gm25514 2 116968039 to 116968173 134 - snRNA gene predicted gene, 25514
Tssr19476 2 116972377 to 116972399 22 + TSS region transcription start site region 19476
Tssr19477 2 116972405 to 116972420 15 + TSS region transcription start site region 19477
Gm29340 2 116972575 to 116976428 3853 - lincRNA gene predicted gene 29340
Tssr19478 2 116972832 to 116972847 15 + TSS region transcription start site region 19478
Cpgi12071 2 116975516 to 116976188 672 CpG island CpG island 12071
D2Mit103 2 116978791 to 116978935 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 103
Tssr605 2 116989569 to 116989584 15 + TSS region transcription start site region 605
Tssr25739 2 116999653 to 116999657 4 - TSS region transcription start site region 25739
Gm13981 2 117055566 to 117056012 446 + pseudogene predicted gene 13981
Gm39912 2 117059609 to 117061181 1572 - lncRNA gene predicted gene, 39912
D2Mit393 2 117072514 to 117072637 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 393
Cpgi12072 2 117120009 to 117122101 2092 CpG island CpG island 12072
Tssr19479 2 117120434 to 117120441 7 + TSS region transcription start site region 19479
Tssr19480 2 117120728 to 117120754 26 + TSS region transcription start site region 19480
Tssr19481 2 117120757 to 117120794 37 + TSS region transcription start site region 19481
Tssr19482 2 117120827 to 117120855 28 + TSS region transcription start site region 19482
Tssr19483 2 117120860 to 117120882 22 + TSS region transcription start site region 19483
Tssr19484 2 117120899 to 117120905 6 + TSS region transcription start site region 19484
Tssr19485 2 117120921 to 117120933 12 + TSS region transcription start site region 19485
Tssr19486 2 117120993 to 117120998 5 + TSS region transcription start site region 19486
Tssr19487 2 117121040 to 117121045 5 + TSS region transcription start site region 19487
Tssr19488 2 117121051 to 117121149 98 + TSS region transcription start site region 19488
Tssr19489 2 117121165 to 117121177 12 + TSS region transcription start site region 19489
Spred1 2 117121374 to 117182279 60905 + protein coding gene sprouty protein with EVH-1 domain 1, related sequence
Tssr19490 2 117121388 to 117121399 11 + TSS region transcription start site region 19490
Tssr19491 2 117121460 to 117121473 13 + TSS region transcription start site region 19491
Tssr25740 2 117122873 to 117122890 17 - TSS region transcription start site region 25740
Tssr19492 2 117123222 to 117123227 5 + TSS region transcription start site region 19492
Tssr19493 2 117123538 to 117123542 4 + TSS region transcription start site region 19493
Tssr19494 2 117126205 to 117126223 18 + TSS region transcription start site region 19494
Tssr19495 2 117128194 to 117128228 34 + TSS region transcription start site region 19495