Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:8857382-8999356

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi10580 19 8871385 to 8872126 741 CpG island CpG island 10580
Tssr154863 19 8871512 to 8871559 47 + TSS region transcription start site region 154863
Ubxn1 19 8871559 to 8875663 4104 + protein coding gene UBX domain protein 1
Tssr154864 19 8871560 to 8871598 38 + TSS region transcription start site region 154864
Tssr154865 19 8871605 to 8871616 11 + TSS region transcription start site region 154865
Tssr154866 19 8871617 to 8871628 11 + TSS region transcription start site region 154866
Tssr154867 19 8871636 to 8871686 50 + TSS region transcription start site region 154867
Tssr154868 19 8873559 to 8873584 25 + TSS region transcription start site region 154868
Uqcc3 19 8880016 to 8880933 917 - protein coding gene ubiquinol-cytochrome c reductase complex assembly factor 3
Cpgi10581 19 8880189 to 8880957 768 CpG island CpG island 10581
Tssr158075 19 8880832 to 8880854 22 - TSS region transcription start site region 158075
Tssr158076 19 8880883 to 8880928 45 - TSS region transcription start site region 158076
Tssr154869 19 8883848 to 8883861 13 + TSS region transcription start site region 154869
Tssr154870 19 8883865 to 8883909 44 + TSS region transcription start site region 154870
Lbhd1 19 8883878 to 8890759 6881 + protein coding gene LBH domain containing 1
Tssr154871 19 8883910 to 8883928 18 + TSS region transcription start site region 154871
Gm49403 19 8883930 to 8887258 3328 + protein coding gene predicted gene, 49403
5730408K05Rik 19 8888387 to 8888770 383 - lncRNA gene RIKEN cDNA 5730408K05 gene
Cpgi10582 19 8888388 to 8889343 955 CpG island CpG island 10582
Snora57 19 8888538 to 8888685 147 - snoRNA gene small nucleolar RNA, H/ACA box 57
Mir5136 19 8888699 to 8888774 75 - miRNA gene microRNA 5136
Tssr158077 19 8888769 to 8888770 1 - TSS region transcription start site region 158077
Tssr154872 19 8888880 to 8888925 45 + TSS region transcription start site region 154872
1810009A15Rik 19 8888883 to 8890759 1876 + protein coding gene RIKEN cDNA 1810009A15 gene
Gm49416 19 8888926 to 8895227 6301 + protein coding gene predicted gene, 49416
Tssr154873 19 8888946 to 8888953 7 + TSS region transcription start site region 154873
Cpgi10583 19 8892708 to 8893417 709 CpG island CpG island 10583
Ints5 19 8892987 to 8897890 4903 + protein coding gene integrator complex subunit 5
Tssr154874 19 8892998 to 8893052 54 + TSS region transcription start site region 154874
Cpgi10584 19 8897649 to 8898630 981 CpG island CpG island 10584
Ganab 19 8898090 to 8916663 18573 + protein coding gene alpha glucosidase 2 alpha neutral subunit
Tssr154875 19 8898095 to 8898122 27 + TSS region transcription start site region 154875
Tssr154876 19 8904986 to 8905015 29 + TSS region transcription start site region 154876
Tssr154877 19 8915756 to 8915783 27 + TSS region transcription start site region 154877
Gm36629 19 8918937 to 8921842 2905 - lncRNA gene predicted gene, 36629
Cpgi10585 19 8920085 to 8920941 856 CpG island CpG island 10585
Tssr154878 19 8920358 to 8920426 68 + TSS region transcription start site region 154878
B3gat3 19 8920393 to 8927236 6843 + protein coding gene beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)
Tssr154879 19 8920432 to 8920446 14 + TSS region transcription start site region 154879
Tssr154880 19 8920461 to 8920473 12 + TSS region transcription start site region 154880
Tssr154881 19 8920496 to 8920575 79 + TSS region transcription start site region 154881
Tssr158078 19 8921843 to 8921851 8 - TSS region transcription start site region 158078
Tssr154882 19 8922057 to 8922074 17 + TSS region transcription start site region 154882
Tssr154883 19 8922124 to 8922136 12 + TSS region transcription start site region 154883
Tssr154884 19 8926923 to 8926926 3 + TSS region transcription start site region 154884
Rom1 19 8927382 to 8929356 1974 - protein coding gene rod outer segment membrane protein 1
Cpgi10586 19 8928924 to 8930455 1531 CpG island CpG island 10586
Tssr158079 19 8929181 to 8929204 23 - TSS region transcription start site region 158079
Tssr158080 19 8929323 to 8929337 14 - TSS region transcription start site region 158080
Tssr154885 19 8929413 to 8929448 35 + TSS region transcription start site region 154885
Tssr154886 19 8929450 to 8929477 27 + TSS region transcription start site region 154886
Tssr154887 19 8929554 to 8929581 27 + TSS region transcription start site region 154887
Tssr154888 19 8929628 to 8929694 66 + TSS region transcription start site region 154888
Eml3 19 8929694 to 8941582 11888 + protein coding gene echinoderm microtubule associated protein like 3
Tssr154889 19 8929841 to 8929866 25 + TSS region transcription start site region 154889
Tssr154890 19 8932449 to 8932487 38 + TSS region transcription start site region 154890
Gm10353 19 8936975 to 8940864 3889 - antisense lncRNA gene predicted gene 10353
Tssr154891 19 8939556 to 8939559 3 + TSS region transcription start site region 154891
Cpgi10587 19 8941592 to 8942754 1162 CpG island CpG island 10587
Tssr154892 19 8941845 to 8941852 7 + TSS region transcription start site region 154892
Tssr154893 19 8941865 to 8942050 185 + TSS region transcription start site region 154893
Mta2 19 8941920 to 8952300 10380 + protein coding gene metastasis-associated gene family, member 2
Tssr154894 19 8942161 to 8942172 11 + TSS region transcription start site region 154894
Tssr154895 19 8942239 to 8942250 11 + TSS region transcription start site region 154895
Tssr158081 19 8942366 to 8942411 45 - TSS region transcription start site region 158081
Tssr154896 19 8942485 to 8942514 29 + TSS region transcription start site region 154896
Tssr154897 19 8942521 to 8942542 21 + TSS region transcription start site region 154897
Tssr154898 19 8943117 to 8943120 3 + TSS region transcription start site region 154898
Tssr154899 19 8943559 to 8943564 5 + TSS region transcription start site region 154899
Tssr154900 19 8952070 to 8952085 15 + TSS region transcription start site region 154900
Cpgi10588 19 8953460 to 8954102 642 CpG island CpG island 10588
Tssr154901 19 8953826 to 8953856 30 + TSS region transcription start site region 154901
Tut1 19 8953850 to 8966207 12357 + protein coding gene terminal uridylyl transferase 1, U6 snRNA-specific
Tssr154902 19 8953861 to 8953884 23 + TSS region transcription start site region 154902
Tssr154903 19 8953886 to 8953938 52 + TSS region transcription start site region 154903
Tssr154904 19 8953977 to 8953991 14 + TSS region transcription start site region 154904
Cpgi10589 19 8966613 to 8967437 824 CpG island CpG island 10589
Tssr154905 19 8966721 to 8966735 14 + TSS region transcription start site region 154905
Tssr154906 19 8966999 to 8967019 20 + TSS region transcription start site region 154906
Tssr154907 19 8967031 to 8967050 19 + TSS region transcription start site region 154907
Eef1g 19 8967041 to 8978180 11139 + protein coding gene eukaryotic translation elongation factor 1 gamma
Tssr154908 19 8967064 to 8967077 13 + TSS region transcription start site region 154908
Tssr154909 19 8967079 to 8967102 23 + TSS region transcription start site region 154909
Tssr154910 19 8967109 to 8967171 62 + TSS region transcription start site region 154910
Tssr154911 19 8967175 to 8967208 33 + TSS region transcription start site region 154911
Tssr154912 19 8970560 to 8970565 5 + TSS region transcription start site region 154912
Tssr158082 19 8984425 to 8984437 12 - TSS region transcription start site region 158082
Tssr154913 19 8984836 to 8984882 46 + TSS region transcription start site region 154913
Cpgi10590 19 8988873 to 8990000 1127 CpG island CpG island 10590
Tssr154914 19 8989021 to 8989064 43 + TSS region transcription start site region 154914
Tssr154915 19 8989277 to 8989295 18 + TSS region transcription start site region 154915
Ahnak 19 8989284 to 9076919 87635 + protein coding gene AHNAK nucleoprotein (desmoyokin)
Tssr154916 19 8989327 to 8989338 11 + TSS region transcription start site region 154916
Tssr154917 19 8990238 to 8990261 23 + TSS region transcription start site region 154917
Tssr154918 19 8990268 to 8990313 45 + TSS region transcription start site region 154918
Tssr154919 19 8990600 to 8990616 16 + TSS region transcription start site region 154919
Tssr154920 19 8990644 to 8990658 14 + TSS region transcription start site region 154920
Tssr154921 19 8993348 to 8993368 20 + TSS region transcription start site region 154921
Tssr154922 19 8997885 to 8997905 20 + TSS region transcription start site region 154922