Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:8852382-9004356

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrn4cl 19 8850785 to 8853909 3124 + protein coding gene LRRN4 C-terminal like
D19Mit125 19 8853007 to 8853116 109 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 125
Cpgi10580 19 8871385 to 8872126 741 CpG island CpG island 10580
Tssr154863 19 8871512 to 8871559 47 + TSS region transcription start site region 154863
Ubxn1 19 8871559 to 8875663 4104 + protein coding gene UBX domain protein 1
Tssr154864 19 8871560 to 8871598 38 + TSS region transcription start site region 154864
Tssr154865 19 8871605 to 8871616 11 + TSS region transcription start site region 154865
Tssr154866 19 8871617 to 8871628 11 + TSS region transcription start site region 154866
Tssr154867 19 8871636 to 8871686 50 + TSS region transcription start site region 154867
Tssr154868 19 8873559 to 8873584 25 + TSS region transcription start site region 154868
Uqcc3 19 8880016 to 8880933 917 - protein coding gene ubiquinol-cytochrome c reductase complex assembly factor 3
Cpgi10581 19 8880189 to 8880957 768 CpG island CpG island 10581
Tssr158075 19 8880832 to 8880854 22 - TSS region transcription start site region 158075
Tssr158076 19 8880883 to 8880928 45 - TSS region transcription start site region 158076
Tssr154869 19 8883848 to 8883861 13 + TSS region transcription start site region 154869
Tssr154870 19 8883865 to 8883909 44 + TSS region transcription start site region 154870
Lbhd1 19 8883878 to 8890759 6881 + protein coding gene LBH domain containing 1
Tssr154871 19 8883910 to 8883928 18 + TSS region transcription start site region 154871
Gm49403 19 8883930 to 8887258 3328 + protein coding gene predicted gene, 49403
5730408K05Rik 19 8888387 to 8888770 383 - lncRNA gene RIKEN cDNA 5730408K05 gene
Cpgi10582 19 8888388 to 8889343 955 CpG island CpG island 10582
Snora57 19 8888538 to 8888685 147 - snoRNA gene small nucleolar RNA, H/ACA box 57
Mir5136 19 8888699 to 8888774 75 - miRNA gene microRNA 5136
Tssr158077 19 8888769 to 8888770 1 - TSS region transcription start site region 158077
Tssr154872 19 8888880 to 8888925 45 + TSS region transcription start site region 154872
1810009A15Rik 19 8888883 to 8890759 1876 + protein coding gene RIKEN cDNA 1810009A15 gene
Gm49416 19 8888926 to 8895227 6301 + protein coding gene predicted gene, 49416
Tssr154873 19 8888946 to 8888953 7 + TSS region transcription start site region 154873
Cpgi10583 19 8892708 to 8893417 709 CpG island CpG island 10583
Ints5 19 8892987 to 8897890 4903 + protein coding gene integrator complex subunit 5
Tssr154874 19 8892998 to 8893052 54 + TSS region transcription start site region 154874
Cpgi10584 19 8897649 to 8898630 981 CpG island CpG island 10584
Ganab 19 8898090 to 8916663 18573 + protein coding gene alpha glucosidase 2 alpha neutral subunit
Tssr154875 19 8898095 to 8898122 27 + TSS region transcription start site region 154875
Tssr154876 19 8904986 to 8905015 29 + TSS region transcription start site region 154876
Tssr154877 19 8915756 to 8915783 27 + TSS region transcription start site region 154877
Gm36629 19 8918937 to 8921842 2905 - lncRNA gene predicted gene, 36629
Cpgi10585 19 8920085 to 8920941 856 CpG island CpG island 10585
Tssr154878 19 8920358 to 8920426 68 + TSS region transcription start site region 154878
B3gat3 19 8920393 to 8927236 6843 + protein coding gene beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)
Tssr154879 19 8920432 to 8920446 14 + TSS region transcription start site region 154879
Tssr154880 19 8920461 to 8920473 12 + TSS region transcription start site region 154880
Tssr154881 19 8920496 to 8920575 79 + TSS region transcription start site region 154881
Tssr158078 19 8921843 to 8921851 8 - TSS region transcription start site region 158078
Tssr154882 19 8922057 to 8922074 17 + TSS region transcription start site region 154882
Tssr154883 19 8922124 to 8922136 12 + TSS region transcription start site region 154883
Tssr154884 19 8926923 to 8926926 3 + TSS region transcription start site region 154884
Rom1 19 8927382 to 8929356 1974 - protein coding gene rod outer segment membrane protein 1
Cpgi10586 19 8928924 to 8930455 1531 CpG island CpG island 10586
Tssr158079 19 8929181 to 8929204 23 - TSS region transcription start site region 158079
Tssr158080 19 8929323 to 8929337 14 - TSS region transcription start site region 158080
Tssr154885 19 8929413 to 8929448 35 + TSS region transcription start site region 154885
Tssr154886 19 8929450 to 8929477 27 + TSS region transcription start site region 154886
Tssr154887 19 8929554 to 8929581 27 + TSS region transcription start site region 154887
Tssr154888 19 8929628 to 8929694 66 + TSS region transcription start site region 154888
Eml3 19 8929694 to 8941582 11888 + protein coding gene echinoderm microtubule associated protein like 3
Tssr154889 19 8929841 to 8929866 25 + TSS region transcription start site region 154889
Tssr154890 19 8932449 to 8932487 38 + TSS region transcription start site region 154890
Gm10353 19 8936975 to 8940864 3889 - antisense lncRNA gene predicted gene 10353
Tssr154891 19 8939556 to 8939559 3 + TSS region transcription start site region 154891
Cpgi10587 19 8941592 to 8942754 1162 CpG island CpG island 10587
Tssr154892 19 8941845 to 8941852 7 + TSS region transcription start site region 154892
Tssr154893 19 8941865 to 8942050 185 + TSS region transcription start site region 154893
Mta2 19 8941920 to 8952300 10380 + protein coding gene metastasis-associated gene family, member 2
Tssr154894 19 8942161 to 8942172 11 + TSS region transcription start site region 154894
Tssr154895 19 8942239 to 8942250 11 + TSS region transcription start site region 154895
Tssr158081 19 8942366 to 8942411 45 - TSS region transcription start site region 158081
Tssr154896 19 8942485 to 8942514 29 + TSS region transcription start site region 154896
Tssr154897 19 8942521 to 8942542 21 + TSS region transcription start site region 154897
Tssr154898 19 8943117 to 8943120 3 + TSS region transcription start site region 154898
Tssr154899 19 8943559 to 8943564 5 + TSS region transcription start site region 154899
Tssr154900 19 8952070 to 8952085 15 + TSS region transcription start site region 154900
Cpgi10588 19 8953460 to 8954102 642 CpG island CpG island 10588
Tssr154901 19 8953826 to 8953856 30 + TSS region transcription start site region 154901
Tut1 19 8953850 to 8966207 12357 + protein coding gene terminal uridylyl transferase 1, U6 snRNA-specific
Tssr154902 19 8953861 to 8953884 23 + TSS region transcription start site region 154902
Tssr154903 19 8953886 to 8953938 52 + TSS region transcription start site region 154903
Tssr154904 19 8953977 to 8953991 14 + TSS region transcription start site region 154904
Cpgi10589 19 8966613 to 8967437 824 CpG island CpG island 10589
Tssr154905 19 8966721 to 8966735 14 + TSS region transcription start site region 154905
Tssr154906 19 8966999 to 8967019 20 + TSS region transcription start site region 154906
Tssr154907 19 8967031 to 8967050 19 + TSS region transcription start site region 154907
Eef1g 19 8967041 to 8978180 11139 + protein coding gene eukaryotic translation elongation factor 1 gamma
Tssr154908 19 8967064 to 8967077 13 + TSS region transcription start site region 154908
Tssr154909 19 8967079 to 8967102 23 + TSS region transcription start site region 154909
Tssr154910 19 8967109 to 8967171 62 + TSS region transcription start site region 154910
Tssr154911 19 8967175 to 8967208 33 + TSS region transcription start site region 154911
Tssr154912 19 8970560 to 8970565 5 + TSS region transcription start site region 154912
Tssr158082 19 8984425 to 8984437 12 - TSS region transcription start site region 158082
Tssr154913 19 8984836 to 8984882 46 + TSS region transcription start site region 154913
Cpgi10590 19 8988873 to 8990000 1127 CpG island CpG island 10590
Tssr154914 19 8989021 to 8989064 43 + TSS region transcription start site region 154914
Tssr154915 19 8989277 to 8989295 18 + TSS region transcription start site region 154915
Ahnak 19 8989284 to 9076919 87635 + protein coding gene AHNAK nucleoprotein (desmoyokin)
Tssr154916 19 8989327 to 8989338 11 + TSS region transcription start site region 154916
Tssr154917 19 8990238 to 8990261 23 + TSS region transcription start site region 154917
Tssr154918 19 8990268 to 8990313 45 + TSS region transcription start site region 154918
Tssr154919 19 8990600 to 8990616 16 + TSS region transcription start site region 154919
Tssr154920 19 8990644 to 8990658 14 + TSS region transcription start site region 154920
Tssr154921 19 8993348 to 8993368 20 + TSS region transcription start site region 154921
Tssr154922 19 8997885 to 8997905 20 + TSS region transcription start site region 154922
Tssr158083 19 8999691 to 8999737 46 - TSS region transcription start site region 158083
Tssr158084 19 9000122 to 9000148 26 - TSS region transcription start site region 158084
Tssr154923 19 9000685 to 9000699 14 + TSS region transcription start site region 154923
Tssr154924 19 9001775 to 9001806 31 + TSS region transcription start site region 154924
Tssr158085 19 9001780 to 9001802 22 - TSS region transcription start site region 158085
Tssr154925 19 9002405 to 9002417 12 + TSS region transcription start site region 154925
Tssr154926 19 9002463 to 9002509 46 + TSS region transcription start site region 154926
Tssr154927 19 9002644 to 9002657 13 + TSS region transcription start site region 154927
Tssr154928 19 9002708 to 9002732 24 + TSS region transcription start site region 154928
Tssr154929 19 9002760 to 9002791 31 + TSS region transcription start site region 154929
Tssr154930 19 9002801 to 9002837 36 + TSS region transcription start site region 154930
Tssr158086 19 9002947 to 9002967 20 - TSS region transcription start site region 158086
Tssr154931 19 9003061 to 9003101 40 + TSS region transcription start site region 154931
Tssr154932 19 9003125 to 9003136 11 + TSS region transcription start site region 154932
Tssr158087 19 9003496 to 9003539 43 - TSS region transcription start site region 158087
Tssr154933 19 9003754 to 9003766 12 + TSS region transcription start site region 154933
Tssr154934 19 9003814 to 9003829 15 + TSS region transcription start site region 154934
Tssr154935 19 9003873 to 9003884 11 + TSS region transcription start site region 154935
Tssr154936 19 9004039 to 9004052 13 + TSS region transcription start site region 154936
Tssr154937 19 9004135 to 9004150 15 + TSS region transcription start site region 154937