Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:6115665-6355679

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr154582 19 6115717 to 6115726 9 + TSS region transcription start site region 154582
Sac3d1 19 6116004 to 6118586 2582 - protein coding gene SAC3 domain containing 1
Cpgi10499 19 6117599 to 6118723 1124 CpG island CpG island 10499
Tssr157828 19 6117843 to 6117860 17 - TSS region transcription start site region 157828
Tssr157829 19 6118215 to 6118233 18 - TSS region transcription start site region 157829
Tssr157830 19 6118234 to 6118268 34 - TSS region transcription start site region 157830
Tssr157831 19 6118468 to 6118479 11 - TSS region transcription start site region 157831
Tssr157832 19 6118491 to 6118554 63 - TSS region transcription start site region 157832
Snx15 19 6119399 to 6128304 8905 - protein coding gene sorting nexin 15
Tssr157833 19 6121857 to 6121892 35 - TSS region transcription start site region 157833
Tssr157834 19 6127825 to 6127842 17 - TSS region transcription start site region 157834
Cpgi10500 19 6127931 to 6128359 428 CpG island CpG island 10500
Tssr157835 19 6128144 to 6128191 47 - TSS region transcription start site region 157835
Tssr157836 19 6128208 to 6128289 81 - TSS region transcription start site region 157836
Arl2 19 6134389 to 6141137 6748 - protein coding gene ADP-ribosylation factor-like 2
Cpgi10501 19 6140389 to 6141576 1187 CpG island CpG island 10501
Tssr157837 19 6141075 to 6141122 47 - TSS region transcription start site region 157837
Tssr157838 19 6141128 to 6141168 40 - TSS region transcription start site region 157838
Tssr157839 19 6141178 to 6141190 12 - TSS region transcription start site region 157839
Tssr157840 19 6141199 to 6141209 10 - TSS region transcription start site region 157840
Tssr157841 19 6141402 to 6141424 22 - TSS region transcription start site region 157841
n-R5s19 19 6144732 to 6144851 119 + rRNA gene nuclear encoded rRNA 5S 19
Gm5510 19 6152715 to 6153200 485 + pseudogene predicted pseudogene 5510
Batf2 19 6164391 to 6172476 8085 + protein coding gene basic leucine zipper transcription factor, ATF-like 2
Tssr154583 19 6164433 to 6164446 13 + TSS region transcription start site region 154583
Tssr154584 19 6164450 to 6164461 11 + TSS region transcription start site region 154584
Tssr154585 19 6164478 to 6164511 33 + TSS region transcription start site region 154585
Tssr154586 19 6165738 to 6165751 13 + TSS region transcription start site region 154586
Tssr154587 19 6165766 to 6165777 11 + TSS region transcription start site region 154587
Tssr154588 19 6171957 to 6171964 7 + TSS region transcription start site region 154588
Tssr154589 19 6174863 to 6174908 45 + TSS region transcription start site region 154589
Cpgi10502 19 6184186 to 6184682 496 CpG island CpG island 10502
Tssr154590 19 6184339 to 6184352 13 + TSS region transcription start site region 154590
Tssr154591 19 6184363 to 6184375 12 + TSS region transcription start site region 154591
Majin 19 6184388 to 6224225 39837 + protein coding gene membrane anchored junction protein
D19Mit109 19 6207607 to 6207730 123 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 109
Tssr154592 19 6226378 to 6226381 3 + TSS region transcription start site region 154592
Gpha2 19 6226401 to 6227768 1367 + protein coding gene glycoprotein hormone alpha 2
Ppp2r5b 19 6227767 to 6235840 8073 - protein coding gene protein phosphatase 2, regulatory subunit B', beta
Tssr157842 19 6232302 to 6232306 4 - TSS region transcription start site region 157842
Tssr157843 19 6234953 to 6234981 28 - TSS region transcription start site region 157843
Cpgi10503 19 6235342 to 6236284 942 CpG island CpG island 10503
Tssr157844 19 6235665 to 6235679 14 - TSS region transcription start site region 157844
Tssr157845 19 6235804 to 6235860 56 - TSS region transcription start site region 157845
Cpgi10504 19 6241413 to 6242256 843 CpG island CpG island 10504
Atg2a 19 6241664 to 6262304 20640 + protein coding gene autophagy related 2A
Tssr154593 19 6241682 to 6241694 12 + TSS region transcription start site region 154593
Tssr154594 19 6241699 to 6241734 35 + TSS region transcription start site region 154594
Tssr5422 19 6242373 to 6242396 23 - TSS region transcription start site region 5422
Tssr154595 19 6244836 to 6244843 7 + TSS region transcription start site region 154595
Tssr154596 19 6263261 to 6263283 22 + TSS region transcription start site region 154596
Tssr154597 19 6263605 to 6263632 27 + TSS region transcription start site region 154597
Tssr157846 19 6264408 to 6264418 10 - TSS region transcription start site region 157846
Mirc17 19 6264643 to 6264932 289 complex/cluster/region microRNA cluster 17, including Mir194-2 through Mir192
Mir194-2 19 6264643 to 6264728 85 + miRNA gene microRNA 194-2
Mir192 19 6264844 to 6264932 88 + miRNA gene microRNA 192
Gm14963 19 6268795 to 6276605 7810 - lncRNA gene predicted gene 14963
Tssr154598 19 6269040 to 6269073 33 + TSS region transcription start site region 154598
Tssr154599 19 6275921 to 6275928 7 + TSS region transcription start site region 154599
Cpgi10505 19 6276131 to 6277739 1608 CpG island CpG island 10505
Tssr154600 19 6276168 to 6276172 4 + TSS region transcription start site region 154600
Tssr154601 19 6276780 to 6276792 12 + TSS region transcription start site region 154601
Tssr154602 19 6276850 to 6276891 41 + TSS region transcription start site region 154602
Ehd1 19 6276896 to 6300096 23200 + protein coding gene EH-domain containing 1
Tssr154603 19 6276899 to 6276936 37 + TSS region transcription start site region 154603
Tssr157847 19 6277724 to 6277766 42 - TSS region transcription start site region 157847
Tssr157848 19 6278195 to 6278220 25 - TSS region transcription start site region 157848
Tssr154604 19 6282063 to 6282067 4 + TSS region transcription start site region 154604
Tssr154605 19 6282745 to 6282761 16 + TSS region transcription start site region 154605
Tssr154606 19 6294427 to 6294445 18 + TSS region transcription start site region 154606
Tssr157849 19 6296658 to 6296665 7 - TSS region transcription start site region 157849
Tssr154607 19 6296822 to 6296847 25 + TSS region transcription start site region 154607
Tssr154608 19 6297902 to 6297924 22 + TSS region transcription start site region 154608
Tssr154609 19 6297943 to 6297969 26 + TSS region transcription start site region 154609
Tssr154610 19 6297986 to 6297995 9 + TSS region transcription start site region 154610
Tssr154611 19 6298289 to 6298294 5 + TSS region transcription start site region 154611
Tssr154612 19 6298700 to 6298738 38 + TSS region transcription start site region 154612
Tssr154613 19 6298845 to 6298863 18 + TSS region transcription start site region 154613
Tssr157850 19 6298891 to 6298902 11 - TSS region transcription start site region 157850
Tssr154614 19 6299124 to 6299154 30 + TSS region transcription start site region 154614
Tssr157851 19 6299579 to 6299619 40 - TSS region transcription start site region 157851
Tssr154615 19 6299726 to 6299748 22 + TSS region transcription start site region 154615
Tssr154616 19 6299771 to 6299782 11 + TSS region transcription start site region 154616
Cpgi10506 19 6305962 to 6307045 1083 CpG island CpG island 10506
Cdc42bpg 19 6306457 to 6325653 19196 + protein coding gene CDC42 binding protein kinase gamma (DMPK-like)
Tssr154617 19 6306538 to 6306553 15 + TSS region transcription start site region 154617
Tssr154618 19 6306626 to 6306638 12 + TSS region transcription start site region 154618
Tssr154619 19 6306872 to 6306896 24 + TSS region transcription start site region 154619
Tssr157852 19 6307836 to 6307845 9 - TSS region transcription start site region 157852
Cpgi10507 19 6334954 to 6335900 946 CpG island CpG island 10507
Men1 19 6334979 to 6340891 5912 + protein coding gene multiple endocrine neoplasia 1
Tssr154620 19 6335015 to 6335070 55 + TSS region transcription start site region 154620
Tssr154621 19 6335093 to 6335113 20 + TSS region transcription start site region 154621
Cpgi10508 19 6339909 to 6340105 196 CpG island CpG island 10508
Cpgi10509 19 6340724 to 6341998 1274 CpG island CpG island 10509
Tssr154622 19 6341121 to 6341247 126 + TSS region transcription start site region 154622
Map4k2 19 6341135 to 6355615 14480 + protein coding gene mitogen-activated protein kinase kinase kinase kinase 2
Tssr154623 19 6341423 to 6341486 63 + TSS region transcription start site region 154623
Tssr154624 19 6341746 to 6341793 47 + TSS region transcription start site region 154624
Tssr154625 19 6342534 to 6342542 8 + TSS region transcription start site region 154625
Tssr154626 19 6342549 to 6342560 11 + TSS region transcription start site region 154626
Tssr154627 19 6342562 to 6342573 11 + TSS region transcription start site region 154627
Tssr154628 19 6343782 to 6343793 11 + TSS region transcription start site region 154628
Tssr154629 19 6346411 to 6346425 14 + TSS region transcription start site region 154629
Mir6989 19 6346480 to 6346544 64 + miRNA gene microRNA 6989
Gm14966 19 6355522 to 6363759 8237 - antisense lncRNA gene predicted gene 14966