Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:6084186-6284682

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfpl1 19 6080757 to 6084939 4182 - protein coding gene zinc finger like protein 1
Cpgi10497 19 6084327 to 6085594 1267 CpG island CpG island 10497
Tssr157824 19 6084679 to 6084690 11 - TSS region transcription start site region 157824
Tssr157825 19 6084698 to 6084731 33 - TSS region transcription start site region 157825
Tssr157826 19 6084873 to 6084940 67 - TSS region transcription start site region 157826
Tssr157827 19 6084941 to 6084957 16 - TSS region transcription start site region 157827
Tssr154562 19 6085039 to 6085051 12 + TSS region transcription start site region 154562
Tssr154563 19 6085053 to 6085146 93 + TSS region transcription start site region 154563
Cdca5 19 6085097 to 6091773 6676 + protein coding gene cell division cycle associated 5
Gm550 19 6093724 to 6098236 4512 + protein coding gene predicted gene 550
Tssr154564 19 6095773 to 6095777 4 + TSS region transcription start site region 154564
Tssr154565 19 6095798 to 6095843 45 + TSS region transcription start site region 154565
Tssr154566 19 6095857 to 6095875 18 + TSS region transcription start site region 154566
Tssr154567 19 6105774 to 6105789 15 + TSS region transcription start site region 154567
Naaladl1 19 6105798 to 6115555 9757 + protein coding gene N-acetylated alpha-linked acidic dipeptidase-like 1
Tssr154568 19 6106122 to 6106133 11 + TSS region transcription start site region 154568
Cpgi10498 19 6106138 to 6106364 226 CpG island CpG island 10498
Tssr154569 19 6106404 to 6106428 24 + TSS region transcription start site region 154569
Tssr154570 19 6106879 to 6106904 25 + TSS region transcription start site region 154570
Tssr154571 19 6108448 to 6108458 10 + TSS region transcription start site region 154571
Tssr154572 19 6108614 to 6108624 10 + TSS region transcription start site region 154572
Tssr154573 19 6108680 to 6108697 17 + TSS region transcription start site region 154573
Tssr154574 19 6112886 to 6112902 16 + TSS region transcription start site region 154574
Tssr154575 19 6112906 to 6112914 8 + TSS region transcription start site region 154575
Tssr154576 19 6112924 to 6112937 13 + TSS region transcription start site region 154576
Tssr154577 19 6112940 to 6112946 6 + TSS region transcription start site region 154577
Tssr154578 19 6114448 to 6114456 8 + TSS region transcription start site region 154578
Tssr154579 19 6114458 to 6114471 13 + TSS region transcription start site region 154579
Tssr154580 19 6114850 to 6114862 12 + TSS region transcription start site region 154580
Tssr154581 19 6115570 to 6115587 17 + TSS region transcription start site region 154581
Tssr154582 19 6115717 to 6115726 9 + TSS region transcription start site region 154582
Sac3d1 19 6116004 to 6118586 2582 - protein coding gene SAC3 domain containing 1
Cpgi10499 19 6117599 to 6118723 1124 CpG island CpG island 10499
Tssr157828 19 6117843 to 6117860 17 - TSS region transcription start site region 157828
Tssr157829 19 6118215 to 6118233 18 - TSS region transcription start site region 157829
Tssr157830 19 6118234 to 6118268 34 - TSS region transcription start site region 157830
Tssr157831 19 6118468 to 6118479 11 - TSS region transcription start site region 157831
Tssr157832 19 6118491 to 6118554 63 - TSS region transcription start site region 157832
Snx15 19 6119399 to 6128304 8905 - protein coding gene sorting nexin 15
Tssr157833 19 6121857 to 6121892 35 - TSS region transcription start site region 157833
Tssr157834 19 6127825 to 6127842 17 - TSS region transcription start site region 157834
Cpgi10500 19 6127931 to 6128359 428 CpG island CpG island 10500
Tssr157835 19 6128144 to 6128191 47 - TSS region transcription start site region 157835
Tssr157836 19 6128208 to 6128289 81 - TSS region transcription start site region 157836
Arl2 19 6134389 to 6141137 6748 - protein coding gene ADP-ribosylation factor-like 2
Cpgi10501 19 6140389 to 6141576 1187 CpG island CpG island 10501
Tssr157837 19 6141075 to 6141122 47 - TSS region transcription start site region 157837
Tssr157838 19 6141128 to 6141168 40 - TSS region transcription start site region 157838
Tssr157839 19 6141178 to 6141190 12 - TSS region transcription start site region 157839
Tssr157840 19 6141199 to 6141209 10 - TSS region transcription start site region 157840
Tssr157841 19 6141402 to 6141424 22 - TSS region transcription start site region 157841
n-R5s19 19 6144732 to 6144851 119 + rRNA gene nuclear encoded rRNA 5S 19
Gm5510 19 6152715 to 6153200 485 + pseudogene predicted pseudogene 5510
Batf2 19 6164391 to 6172476 8085 + protein coding gene basic leucine zipper transcription factor, ATF-like 2
Tssr154583 19 6164433 to 6164446 13 + TSS region transcription start site region 154583
Tssr154584 19 6164450 to 6164461 11 + TSS region transcription start site region 154584
Tssr154585 19 6164478 to 6164511 33 + TSS region transcription start site region 154585
Tssr154586 19 6165738 to 6165751 13 + TSS region transcription start site region 154586
Tssr154587 19 6165766 to 6165777 11 + TSS region transcription start site region 154587
Tssr154588 19 6171957 to 6171964 7 + TSS region transcription start site region 154588
Tssr154589 19 6174863 to 6174908 45 + TSS region transcription start site region 154589
Cpgi10502 19 6184186 to 6184682 496 CpG island CpG island 10502
Tssr154590 19 6184339 to 6184352 13 + TSS region transcription start site region 154590
Tssr154591 19 6184363 to 6184375 12 + TSS region transcription start site region 154591
Majin 19 6184388 to 6224225 39837 + protein coding gene membrane anchored junction protein
D19Mit109 19 6207607 to 6207730 123 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 109
Tssr154592 19 6226378 to 6226381 3 + TSS region transcription start site region 154592
Gpha2 19 6226401 to 6227768 1367 + protein coding gene glycoprotein hormone alpha 2
Ppp2r5b 19 6227767 to 6235840 8073 - protein coding gene protein phosphatase 2, regulatory subunit B', beta
Tssr157842 19 6232302 to 6232306 4 - TSS region transcription start site region 157842
Tssr157843 19 6234953 to 6234981 28 - TSS region transcription start site region 157843
Cpgi10503 19 6235342 to 6236284 942 CpG island CpG island 10503
Tssr157844 19 6235665 to 6235679 14 - TSS region transcription start site region 157844
Tssr157845 19 6235804 to 6235860 56 - TSS region transcription start site region 157845
Cpgi10504 19 6241413 to 6242256 843 CpG island CpG island 10504
Atg2a 19 6241664 to 6262304 20640 + protein coding gene autophagy related 2A
Tssr154593 19 6241682 to 6241694 12 + TSS region transcription start site region 154593
Tssr154594 19 6241699 to 6241734 35 + TSS region transcription start site region 154594
Tssr5422 19 6242373 to 6242396 23 - TSS region transcription start site region 5422
Tssr154595 19 6244836 to 6244843 7 + TSS region transcription start site region 154595
Tssr154596 19 6263261 to 6263283 22 + TSS region transcription start site region 154596
Tssr154597 19 6263605 to 6263632 27 + TSS region transcription start site region 154597
Tssr157846 19 6264408 to 6264418 10 - TSS region transcription start site region 157846
Mirc17 19 6264643 to 6264932 289 complex/cluster/region microRNA cluster 17, including Mir194-2 through Mir192
Mir194-2 19 6264643 to 6264728 85 + miRNA gene microRNA 194-2
Mir192 19 6264844 to 6264932 88 + miRNA gene microRNA 192
Gm14963 19 6268795 to 6276605 7810 - lncRNA gene predicted gene 14963
Tssr154598 19 6269040 to 6269073 33 + TSS region transcription start site region 154598
Tssr154599 19 6275921 to 6275928 7 + TSS region transcription start site region 154599
Cpgi10505 19 6276131 to 6277739 1608 CpG island CpG island 10505
Tssr154600 19 6276168 to 6276172 4 + TSS region transcription start site region 154600
Tssr154601 19 6276780 to 6276792 12 + TSS region transcription start site region 154601
Tssr154602 19 6276850 to 6276891 41 + TSS region transcription start site region 154602
Ehd1 19 6276896 to 6300096 23200 + protein coding gene EH-domain containing 1
Tssr154603 19 6276899 to 6276936 37 + TSS region transcription start site region 154603
Tssr157847 19 6277724 to 6277766 42 - TSS region transcription start site region 157847
Tssr157848 19 6278195 to 6278220 25 - TSS region transcription start site region 157848
Tssr154604 19 6282063 to 6282067 4 + TSS region transcription start site region 154604
Tssr154605 19 6282745 to 6282761 16 + TSS region transcription start site region 154605