Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:53908529-55118534

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q14 19 22335962 to 53923073 31587111 QTL weight 3 weeks QTL 14
Acsns1 19 47909441 to 55038113 7128672 QTL Angiostrongylus costaricensis nematode susceptibility 1
Pdcd4 19 53892231 to 53929861 37630 + protein coding gene programmed cell death 4
D19Mit36 19 53922910 to 53923073 163 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 36
Tssr157046 19 53929260 to 53929276 16 + TSS region transcription start site region 157046
Tssr157047 19 53929280 to 53929291 11 + TSS region transcription start site region 157047
Tssr157048 19 53929371 to 53929385 14 + TSS region transcription start site region 157048
Bbip1 19 53929677 to 53944627 14950 - protein coding gene BBSome interacting protein 1
Cpgi11070 19 53943854 to 53945848 1994 CpG island CpG island 11070
Tssr157049 19 53944063 to 53944096 33 + TSS region transcription start site region 157049
Tssr159836 19 53944165 to 53944226 61 - TSS region transcription start site region 159836
Tssr159837 19 53944233 to 53944255 22 - TSS region transcription start site region 159837
Tssr5553 19 53944259 to 53944264 5 - TSS region transcription start site region 5553
Shoc2 19 53944306 to 54033268 88962 + protein coding gene Shoc2, leucine rich repeat scaffold protein
Tssr159838 19 53944436 to 53944487 51 - TSS region transcription start site region 159838
Tssr159839 19 53944621 to 53944632 11 - TSS region transcription start site region 159839
Tssr157050 19 53944840 to 53944867 27 + TSS region transcription start site region 157050
Tssr157051 19 53944870 to 53944907 37 + TSS region transcription start site region 157051
Tssr157052 19 53945916 to 53945918 2 + TSS region transcription start site region 157052
Tssr157053 19 53950035 to 53950052 17 + TSS region transcription start site region 157053
Tssr157054 19 53950390 to 53950435 45 + TSS region transcription start site region 157054
4930484I04Rik 19 53976461 to 54001441 24980 unclassified non-coding RNA gene RIKEN cDNA 4930484I04 gene
Tssr157055 19 54020381 to 54020386 5 + TSS region transcription start site region 157055
Cpgi11071 19 54044508 to 54047844 3336 CpG island CpG island 11071
Tssr157056 19 54045065 to 54045082 17 + TSS region transcription start site region 157056
Adra2a 19 54045182 to 54048982 3800 + protein coding gene adrenergic receptor, alpha 2a
Tssr157057 19 54045233 to 54045244 11 + TSS region transcription start site region 157057
Tssr157058 19 54045245 to 54045248 3 + TSS region transcription start site region 157058
Tssr157059 19 54045251 to 54045267 16 + TSS region transcription start site region 157059
Tssr157060 19 54045588 to 54045603 15 + TSS region transcription start site region 157060
Tssr157061 19 54045743 to 54045753 10 + TSS region transcription start site region 157061
Cpgi11072 19 54114953 to 54115202 249 CpG island CpG island 11072
Gm41865 19 54154877 to 54175117 20240 + lncRNA gene predicted gene, 41865
Cpgi11073 19 54192551 to 54193045 494 CpG island CpG island 11073
Gm41866 19 54198385 to 54201323 2938 - lncRNA gene predicted gene, 41866
D19Mit124 19 54393005 to 54393128 123 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 124
Gm31301 19 54465865 to 54586424 120559 + lncRNA gene predicted gene, 31301
Tssr157062 19 54513529 to 54513534 5 + TSS region transcription start site region 157062
Tssr5554 19 54728346 to 54728351 5 + TSS region transcription start site region 5554
Gm41867 19 54758648 to 54760955 2307 - lncRNA gene predicted gene, 41867
Chldq9 19 54894550 to 54894671 121 QTL cholesterol and HDL QTL 9
D19Mit1 19 54894550 to 54894671 121 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 1
D19Mit34 19 55037939 to 55038113 174 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 34
Gpam 19 55069734 to 55099451 29717 - protein coding gene glycerol-3-phosphate acyltransferase, mitochondrial
Tssr159840 19 55076211 to 55076215 4 - TSS region transcription start site region 159840
Tssr159841 19 55095724 to 55095764 40 - TSS region transcription start site region 159841
Tssr159842 19 55096741 to 55096754 13 - TSS region transcription start site region 159842
Tssr159843 19 55096884 to 55096888 4 - TSS region transcription start site region 159843
Cpgi11074 19 55098850 to 55100086 1236 CpG island CpG island 11074
Tssr159844 19 55099417 to 55099492 75 - TSS region transcription start site region 159844
Gm31356 19 55099543 to 55118931 19388 + lncRNA gene predicted gene, 31356
Tssr159845 19 55103030 to 55103064 34 - TSS region transcription start site region 159845
Tssr159846 19 55103070 to 55103089 19 - TSS region transcription start site region 159846
Tssr159847 19 55103092 to 55103099 7 - TSS region transcription start site region 159847
Tssr159848 19 55103125 to 55103146 21 - TSS region transcription start site region 159848
Tssr159849 19 55103341 to 55103349 8 - TSS region transcription start site region 159849
Tssr159850 19 55114631 to 55114651 20 - TSS region transcription start site region 159850
Tssr159851 19 55117001 to 55117014 13 - TSS region transcription start site region 159851