Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:5057071-5557114

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230 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rin1 19 5050481 to 5057071 6590 + protein coding gene Ras and Rab interactor 1
Cpgi10428 19 5067751 to 5069061 1310 CpG island CpG island 10428
Tssr154380 19 5068077 to 5068085 8 + TSS region transcription start site region 154380
Cd248 19 5068078 to 5070637 2559 + protein coding gene CD248 antigen, endosialin
Tssr154381 19 5068087 to 5068098 11 + TSS region transcription start site region 154381
Tssr154382 19 5068101 to 5068115 14 + TSS region transcription start site region 154382
Tssr154383 19 5068117 to 5068122 5 + TSS region transcription start site region 154383
Tssr154384 19 5069264 to 5069286 22 + TSS region transcription start site region 154384
Tssr154385 19 5069431 to 5069446 15 + TSS region transcription start site region 154385
Tssr154386 19 5069690 to 5069705 15 + TSS region transcription start site region 154386
Tssr154387 19 5069737 to 5069753 16 + TSS region transcription start site region 154387
Tssr154388 19 5069824 to 5069835 11 + TSS region transcription start site region 154388
Gm30627 19 5070830 to 5072120 1290 - lncRNA gene predicted gene, 30627
Cpgi10429 19 5071527 to 5071768 241 CpG island CpG island 10429
Cpgi10430 19 5071918 to 5072417 499 CpG island CpG island 10430
Tssr157540 19 5072074 to 5072090 16 - TSS region transcription start site region 157540
Tssr157541 19 5072109 to 5072129 20 - TSS region transcription start site region 157541
Gm46658 19 5072130 to 5075259 3129 + lncRNA gene predicted gene, 46658
Tssr157542 19 5072497 to 5072523 26 - TSS region transcription start site region 157542
Tmem151a 19 5079337 to 5085477 6140 - protein coding gene transmembrane protein 151A
Cpgi10431 19 5081726 to 5083002 1276 CpG island CpG island 10431
D19Dcr2 19 5084596 to 5084699 103 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 2
Cpgi10432 19 5084832 to 5085981 1149 CpG island CpG island 10432
Tssr157543 19 5085483 to 5085501 18 - TSS region transcription start site region 157543
Cpgi10433 19 5087728 to 5089033 1305 CpG island CpG island 10433
Tssr154389 19 5088534 to 5088575 41 + TSS region transcription start site region 154389
Yif1a 19 5088538 to 5092879 4341 + protein coding gene Yip1 interacting factor homolog A (S. cerevisiae)
Tssr154390 19 5088580 to 5088591 11 + TSS region transcription start site region 154390
Tssr154391 19 5088648 to 5088655 7 + TSS region transcription start site region 154391
Cnih2 19 5092871 to 5098418 5547 - protein coding gene cornichon family AMPA receptor auxiliary protein 2
Tssr157544 19 5093003 to 5093016 13 - TSS region transcription start site region 157544
Tssr157545 19 5093248 to 5093266 18 - TSS region transcription start site region 157545
Cpgi10434 19 5094209 to 5094751 542 CpG island CpG island 10434
Tssr157546 19 5094597 to 5094624 27 - TSS region transcription start site region 157546
Cpgi10435 19 5097951 to 5099066 1115 CpG island CpG island 10435
Tssr157547 19 5098251 to 5098275 24 - TSS region transcription start site region 157547
Tssr157548 19 5098460 to 5098559 99 - TSS region transcription start site region 157548
Rab1b 19 5099207 to 5106996 7789 - protein coding gene RAB1B, member RAS oncogene family
Tssr157549 19 5099505 to 5099525 20 - TSS region transcription start site region 157549
Tssr157550 19 5099676 to 5099701 25 - TSS region transcription start site region 157550
Cpgi10436 19 5106570 to 5107226 656 CpG island CpG island 10436
Tssr157551 19 5106967 to 5107023 56 - TSS region transcription start site region 157551
Tssr157552 19 5107027 to 5107038 11 - TSS region transcription start site region 157552
Klc2 19 5107746 to 5118560 10814 - protein coding gene kinesin light chain 2
Tssr154392 19 5111320 to 5111334 14 + TSS region transcription start site region 154392
Cpgi10437 19 5117082 to 5118710 1628 CpG island CpG island 10437
Gm10817 19 5118037 to 5119299 1262 unclassified gene predicted gene 10817
Tssr157553 19 5118224 to 5118322 98 - TSS region transcription start site region 157553
Tssr157554 19 5118345 to 5118358 13 - TSS region transcription start site region 157554
Tssr157555 19 5118372 to 5118390 18 - TSS region transcription start site region 157555
Gm30840 19 5118844 to 5126127 7283 + lncRNA gene predicted gene, 30840
Gm5242 19 5131740 to 5132972 1232 - pseudogene predicted gene 5242
Pacs1 19 5133688 to 5273119 139431 - protein coding gene phosphofurin acidic cluster sorting protein 1
Tssr157556 19 5134361 to 5134366 5 - TSS region transcription start site region 157556
Tssr157557 19 5158599 to 5158603 4 - TSS region transcription start site region 157557
Gm27468 19 5201198 to 5201303 105 - miRNA gene predicted gene, 27468
Tssr157558 19 5205804 to 5205813 9 - TSS region transcription start site region 157558
D430030G11Rik 19 5212479 to 5215044 2565 unclassified non-coding RNA gene RIKEN cDNA D430030G11 gene
D19Dcr3 19 5222811 to 5222908 97 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 3
Cpgi10438 19 5272247 to 5273585 1338 CpG island CpG island 10438
Tssr157559 19 5272892 to 5272901 9 - TSS region transcription start site region 157559
Tssr157560 19 5272982 to 5273000 18 - TSS region transcription start site region 157560
Tssr157561 19 5273007 to 5273037 30 - TSS region transcription start site region 157561
Tssr157562 19 5273068 to 5273079 11 - TSS region transcription start site region 157562
Tssr157563 19 5273080 to 5273129 49 - TSS region transcription start site region 157563
Tssr157564 19 5273265 to 5273290 25 - TSS region transcription start site region 157564
Sf3b2 19 5273923 to 5295455 21532 - protein coding gene splicing factor 3b, subunit 2
Tssr154393 19 5286803 to 5286822 19 + TSS region transcription start site region 154393
Tssr154394 19 5286880 to 5286924 44 + TSS region transcription start site region 154394
Tssr157565 19 5293188 to 5293198 10 - TSS region transcription start site region 157565
Tssr157566 19 5293275 to 5293289 14 - TSS region transcription start site region 157566
Cpgi10439 19 5295030 to 5295853 823 CpG island CpG island 10439
Tssr157567 19 5295397 to 5295430 33 - TSS region transcription start site region 157567
Tssr154395 19 5298276 to 5298287 11 + TSS region transcription start site region 154395
Tssr154396 19 5298302 to 5298357 55 + TSS region transcription start site region 154396
Cpgi10440 19 5298303 to 5298516 213 CpG island CpG island 10440
Gal3st3 19 5298331 to 5308738 10407 + protein coding gene galactose-3-O-sulfotransferase 3
Tssr154397 19 5298364 to 5298367 3 + TSS region transcription start site region 154397
Tssr157568 19 5302500 to 5302502 2 - TSS region transcription start site region 157568
Gm42064 19 5305873 to 5306997 1124 - lncRNA gene predicted gene, 42064
Cpgi10441 19 5306679 to 5308221 1542 CpG island CpG island 10441
Tssr157569 19 5307071 to 5307114 43 - TSS region transcription start site region 157569
Tssr157570 19 5307508 to 5307528 20 - TSS region transcription start site region 157570
Tssr154398 19 5308252 to 5308272 20 + TSS region transcription start site region 154398
Tssr154399 19 5308302 to 5308313 11 + TSS region transcription start site region 154399
Tssr154400 19 5308367 to 5308371 4 + TSS region transcription start site region 154400
Nstr1 19 5321112 to 5321310 198 QTL nerve sheath tumor resistance QTL 1
D19Mit59 19 5321112 to 5321310 198 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 59
Cpgi10442 19 5323944 to 5324095 151 CpG island CpG island 10442
Gm7074 19 5324333 to 5325253 920 + pseudogene predicted gene 7074
Tssr154401 19 5328000 to 5328017 17 + TSS region transcription start site region 154401
Tssr154402 19 5328049 to 5328061 12 + TSS region transcription start site region 154402
Tssr154403 19 5335619 to 5335630 11 + TSS region transcription start site region 154403
Tssr154404 19 5335644 to 5335651 7 + TSS region transcription start site region 154404
Catsper1 19 5335741 to 5344153 8412 + protein coding gene cation channel, sperm associated 1
Cst6 19 5344705 to 5349574 4869 - protein coding gene cystatin E/M
Cpgi10443 19 5349104 to 5349507 403 CpG island CpG island 10443
Tssr157571 19 5349340 to 5349358 18 - TSS region transcription start site region 157571
Banf1 19 5364641 to 5366645 2004 - protein coding gene barrier to autointegration factor 1
Tssr157572 19 5364802 to 5364825 23 - TSS region transcription start site region 157572
Tssr157573 19 5364859 to 5364878 19 - TSS region transcription start site region 157573
Tssr157574 19 5364893 to 5364918 25 - TSS region transcription start site region 157574
Cpgi10444 19 5365701 to 5367695 1994 CpG island CpG island 10444
Tssr157575 19 5366253 to 5366264 11 - TSS region transcription start site region 157575
Tssr157576 19 5366269 to 5366280 11 - TSS region transcription start site region 157576
Tssr157577 19 5366285 to 5366378 93 - TSS region transcription start site region 157577
Tssr154405 19 5366387 to 5366421 34 + TSS region transcription start site region 154405
Tssr157578 19 5366598 to 5366611 13 - TSS region transcription start site region 157578
Tssr157579 19 5366626 to 5366663 37 - TSS region transcription start site region 157579
Tssr154406 19 5366764 to 5366851 87 + TSS region transcription start site region 154406
Eif1ad 19 5366813 to 5371511 4698 + protein coding gene eukaryotic translation initiation factor 1A domain containing
Tssr154407 19 5366948 to 5366962 14 + TSS region transcription start site region 154407
Tssr154408 19 5366965 to 5367037 72 + TSS region transcription start site region 154408
Sart1 19 5377523 to 5388703 11180 - protein coding gene squamous cell carcinoma antigen recognized by T cells 1
Cpgi10445 19 5387749 to 5389130 1381 CpG island CpG island 10445
D330050I16Rik 19 5388336 to 5390069 1733 + lncRNA gene RIKEN cDNA D330050I16 gene
Tssr157580 19 5388629 to 5388641 12 - TSS region transcription start site region 157580
Tssr157581 19 5388656 to 5388691 35 - TSS region transcription start site region 157581
Tssr157582 19 5388726 to 5388735 9 - TSS region transcription start site region 157582
Tssr154409 19 5388814 to 5388831 17 + TSS region transcription start site region 154409
Tssr154410 19 5388838 to 5388885 47 + TSS region transcription start site region 154410
Tssr157583 19 5389924 to 5389942 18 - TSS region transcription start site region 157583
Tsga10ip 19 5390049 to 5394401 4352 - protein coding gene testis specific 10 interacting protein
Tssr157584 19 5394335 to 5394383 48 - TSS region transcription start site region 157584
Tssr157585 19 5394385 to 5394402 17 - TSS region transcription start site region 157585
Tssr154411 19 5394632 to 5394637 5 + TSS region transcription start site region 154411
Tssr157586 19 5402460 to 5402484 24 - TSS region transcription start site region 157586
Tssr157587 19 5402493 to 5402528 35 - TSS region transcription start site region 157587
Tssr154412 19 5406089 to 5406093 4 + TSS region transcription start site region 154412
Tssr157588 19 5406601 to 5406606 5 - TSS region transcription start site region 157588
Tssr5410 19 5406796 to 5406836 40 + TSS region transcription start site region 5410
4930481A15Rik 19 5406815 to 5422847 16032 + antisense lncRNA gene RIKEN cDNA 4930481A15 gene
Tssr154413 19 5406864 to 5406880 16 + TSS region transcription start site region 154413
Tssr157589 19 5408432 to 5408468 36 - TSS region transcription start site region 157589
Tssr154414 19 5414888 to 5414912 24 + TSS region transcription start site region 154414
Tssr154415 19 5414974 to 5414978 4 + TSS region transcription start site region 154415
Gm6293 19 5415565 to 5415759 194 - pseudogene predicted pseudogene 6293
Cpgi10446 19 5415636 to 5415867 231 CpG island CpG island 10446
Tssr157590 19 5415789 to 5415793 4 - TSS region transcription start site region 157590
Drap1 19 5422805 to 5424979 2174 - protein coding gene Dr1 associated protein 1 (negative cofactor 2 alpha)
Tssr157591 19 5423800 to 5423821 21 - TSS region transcription start site region 157591
Tssr157592 19 5424089 to 5424106 17 - TSS region transcription start site region 157592
Cpgi10447 19 5424107 to 5425751 1644 CpG island CpG island 10447
Tssr157593 19 5424250 to 5424287 37 - TSS region transcription start site region 157593
Tssr157594 19 5424468 to 5424565 97 - TSS region transcription start site region 157594
Tssr157595 19 5424768 to 5424811 43 - TSS region transcription start site region 157595
Tssr157596 19 5424822 to 5424845 23 - TSS region transcription start site region 157596
Tssr157597 19 5424878 to 5424890 12 - TSS region transcription start site region 157597
Tssr157598 19 5424906 to 5425026 120 - TSS region transcription start site region 157598
Tssr154416 19 5425023 to 5425037 14 + TSS region transcription start site region 154416
Tssr157599 19 5425035 to 5425046 11 - TSS region transcription start site region 157599
Tssr154417 19 5425121 to 5425173 52 + TSS region transcription start site region 154417
AI837181 19 5425157 to 5427313 2156 + protein coding gene expressed sequence AI837181
Tssr154418 19 5425237 to 5425248 11 + TSS region transcription start site region 154418
Tssr157600 19 5425367 to 5425388 21 - TSS region transcription start site region 157600
Gm25432 19 5435900 to 5435965 65 + snoRNA gene predicted gene, 25432
Gm31070 19 5439246 to 5439521 275 - pseudogene predicted gene, 31070
Cpgi10448 19 5447302 to 5448973 1671 CpG island CpG island 10448
Tssr154419 19 5447692 to 5447711 19 + TSS region transcription start site region 154419
Fosl1 19 5447698 to 5455938 8240 + protein coding gene fos-like antigen 1
Tssr5411 19 5447724 to 5447729 5 + TSS region transcription start site region 5411
Tssr157601 19 5447770 to 5447773 3 - TSS region transcription start site region 157601
Tssr154420 19 5447859 to 5447866 7 + TSS region transcription start site region 154420
Tssr154421 19 5447886 to 5447905 19 + TSS region transcription start site region 154421
Tssr154422 19 5450233 to 5450282 49 + TSS region transcription start site region 154422
Tssr154423 19 5454423 to 5454429 6 + TSS region transcription start site region 154423
Tssr154424 19 5455049 to 5455068 19 + TSS region transcription start site region 154424
Tssr154425 19 5455590 to 5455612 22 + TSS region transcription start site region 154425
Cpgi10449 19 5456356 to 5457758 1402 CpG island CpG island 10449
Ccdc85b 19 5456789 to 5457397 608 - protein coding gene coiled-coil domain containing 85B
Tssr157602 19 5457488 to 5457494 6 - TSS region transcription start site region 157602
Tssr157603 19 5457504 to 5457573 69 - TSS region transcription start site region 157603
Cpgi10450 19 5460496 to 5461213 717 CpG island CpG island 10450
Tssr154426 19 5460608 to 5460638 30 + TSS region transcription start site region 154426
Fibp 19 5460616 to 5465051 4435 + protein coding gene fibroblast growth factor (acidic) intracellular binding protein
Tssr154427 19 5460648 to 5460655 7 + TSS region transcription start site region 154427
Tssr5412 19 5460659 to 5460666 7 + TSS region transcription start site region 5412
Tssr154428 19 5464057 to 5464108 51 + TSS region transcription start site region 154428
Ctsw 19 5465240 to 5468498 3258 - protein coding gene cathepsin W
Tssr157604 19 5468487 to 5468506 19 - TSS region transcription start site region 157604
Cpgi10451 19 5473728 to 5474018 290 CpG island CpG island 10451
Efemp2 19 5473973 to 5481853 7880 + protein coding gene epidermal growth factor-containing fibulin-like extracellular matrix protein 2
Cpgi10452 19 5474319 to 5475456 1137 CpG island CpG island 10452
Tssr154429 19 5474617 to 5474644 27 + TSS region transcription start site region 154429
Tssr154430 19 5474681 to 5474775 94 + TSS region transcription start site region 154430
Tssr154431 19 5474796 to 5474822 26 + TSS region transcription start site region 154431
Tssr154432 19 5474878 to 5474895 17 + TSS region transcription start site region 154432
Tssr154433 19 5474911 to 5474938 27 + TSS region transcription start site region 154433
Tssr154434 19 5476132 to 5476138 6 + TSS region transcription start site region 154434
Tssr154435 19 5480085 to 5480098 13 + TSS region transcription start site region 154435
Tssr154436 19 5480272 to 5480320 48 + TSS region transcription start site region 154436
Mus81 19 5482836 to 5488410 5574 - protein coding gene MUS81 structure-specific endonuclease subunit
Cpgi10453 19 5487664 to 5488370 706 CpG island CpG island 10453
Tssr157605 19 5488271 to 5488396 125 - TSS region transcription start site region 157605
1700061A03Rik 19 5488743 to 5489197 454 unclassified gene RIKEN cDNA 1700061A03 gene
Cpgi10454 19 5488914 to 5489479 565 CpG island CpG island 10454
Tssr157606 19 5488941 to 5488950 9 - TSS region transcription start site region 157606
Tssr157607 19 5488960 to 5488972 12 - TSS region transcription start site region 157607
Tssr157608 19 5489046 to 5489058 12 - TSS region transcription start site region 157608
Tssr157609 19 5489077 to 5489091 14 - TSS region transcription start site region 157609