Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:50517200-53067203

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sorcs1 19 50143299 to 50678646 535347 - protein coding gene sortilin-related VPS10 domain containing receptor 1
Tssr159787 19 50573174 to 50573178 4 - TSS region transcription start site region 159787
D19Mit1001 19 50603245 to 50603362 117 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 1001
Tssr159788 19 50620216 to 50620222 6 - TSS region transcription start site region 159788
Gm26629 19 50677406 to 50778662 101256 + lincRNA gene predicted gene, 26629
Cpgi11048 19 50677882 to 50679161 1279 CpG island CpG island 11048
Tssr159789 19 50678577 to 50678586 9 - TSS region transcription start site region 159789
Tssr159790 19 50678642 to 50678702 60 - TSS region transcription start site region 159790
Tssr159791 19 50678712 to 50678733 21 - TSS region transcription start site region 159791
Tssr156928 19 50678929 to 50678936 7 + TSS region transcription start site region 156928
Tssr159792 19 50713635 to 50713649 14 - TSS region transcription start site region 159792
D19Mit70 19 50717374 to 50717567 193 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 70
D19Dcr15 19 50730164 to 50730259 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 15
Gm25659 19 50812324 to 50812360 36 + rRNA gene predicted gene, 25659
D19Mit123 19 50963514 to 50963662 148 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 123
Stnn 19 50963514 to 50963662 148 QTL striatal neuron number
Led3 19 51099940 to 59135440 8035500 QTL late embryonic death 3
D19Mit49 19 51099940 to 51100073 133 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 49
Tssr159793 19 51142678 to 51142695 17 - TSS region transcription start site region 159793
D19Dcr16 19 51229976 to 51230084 108 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 16
Gm25644 19 51239690 to 51239796 106 - snRNA gene predicted gene, 25644
D19Dcr17 19 51485500 to 51485595 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 17
Tgq29 19 51608348 to 51608348 0 QTL triglyceride QTL 29
D19Dcr18 19 51771411 to 51771506 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 18
D19Dcr19 19 51788772 to 51788875 103 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 19
Tssr156929 19 51792200 to 51792203 3 + TSS region transcription start site region 156929
Rpl31-ps18 19 51792226 to 51792602 376 + pseudogene ribosomal protein L31, pseudogene 18
Gm4115 19 51972994 to 51974073 1079 - pseudogene predicted gene 4115
D19Dcr20 19 52069459 to 52069563 104 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 20
Ins1 19 52264297 to 52265015 718 + protein coding gene insulin I
Tssr156930 19 52264444 to 52264455 11 + TSS region transcription start site region 156930
Tssr5548 19 52264633 to 52264644 11 + TSS region transcription start site region 5548
Tssr156931 19 52264945 to 52264970 25 + TSS region transcription start site region 156931
Tssr159794 19 52264950 to 52264956 6 - TSS region transcription start site region 159794
D19Dcr21 19 52339619 to 52339716 97 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 21
Gm41860 19 52372948 to 52389660 16712 - lncRNA gene predicted gene, 41860
Cpgi11049 19 52563941 to 52564363 422 CpG island CpG island 11049
Tssr156932 19 52613602 to 52613605 3 + TSS region transcription start site region 156932
AA387883 19 52923181 to 52926931 3750 + lncRNA gene expressed sequence AA387883
Gm41861 19 52943109 to 52945972 2863 - lncRNA gene predicted gene, 41861
Xpnpep1 19 52943417 to 53040214 96797 - protein coding gene X-prolyl aminopeptidase (aminopeptidase P) 1, soluble
Tssr159795 19 52953098 to 52953127 29 - TSS region transcription start site region 159795
Mir6407 19 53010656 to 53010756 100 - miRNA gene microRNA 6407
Tssr159796 19 53013449 to 53013461 12 - TSS region transcription start site region 159796
D19Mit7 19 53024074 to 53024188 114 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 7
Tssr159797 19 53028368 to 53028379 11 - TSS region transcription start site region 159797
Tssr159798 19 53032102 to 53032160 58 - TSS region transcription start site region 159798
Cpgi11050 19 53038098 to 53038859 761 CpG island CpG island 11050
Tssr159799 19 53038534 to 53038646 112 - TSS region transcription start site region 159799
Tssr159800 19 53038656 to 53038666 10 - TSS region transcription start site region 159800
Tssr156933 19 53038841 to 53038849 8 + TSS region transcription start site region 156933
Tssr159801 19 53039224 to 53039227 3 - TSS region transcription start site region 159801
Tssr159802 19 53039231 to 53039252 21 - TSS region transcription start site region 159802
Gm30234 19 53050716 to 53105907 55191 - lncRNA gene predicted gene, 30234
Tssr156934 19 53051409 to 53051423 14 + TSS region transcription start site region 156934
Cpgi11051 19 53052144 to 53052314 170 CpG island CpG island 11051
D19Mit26 19 53057422 to 53057555 133 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 26
Tssr159803 19 53058080 to 53058099 19 - TSS region transcription start site region 159803
Tssr156935 19 53062315 to 53062326 11 + TSS region transcription start site region 156935
Tssr159804 19 53064477 to 53064482 5 - TSS region transcription start site region 159804