Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:47914734-50374738

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itprip 19 47894593 to 47919519 24926 - protein coding gene inositol 1,4,5-triphosphate receptor interacting protein
Tssr156919 19 47915557 to 47915564 7 + TSS region transcription start site region 156919
Cpgi11042 19 47918689 to 47919470 781 CpG island CpG island 11042
Tssr156920 19 47918706 to 47918741 35 + TSS region transcription start site region 156920
Tssr159778 19 47918921 to 47918930 9 - TSS region transcription start site region 159778
Gm22240 19 47919192 to 47919273 81 - miRNA gene predicted gene, 22240
Tssr159779 19 47919193 to 47919235 42 - TSS region transcription start site region 159779
Tssr159780 19 47919237 to 47919260 23 - TSS region transcription start site region 159780
Tssr159781 19 47919269 to 47919305 36 - TSS region transcription start site region 159781
Cpgi11043 19 47937436 to 47938232 796 CpG island CpG island 11043
Tssr156921 19 47937648 to 47937696 48 + TSS region transcription start site region 156921
Cfap58 19 47937712 to 48035379 97667 + protein coding gene cilia and flagella associated protein 58
Cpgi11044 19 47947148 to 47947384 236 CpG island CpG island 11044
Cpgi11045 19 47962320 to 47962601 281 CpG island CpG island 11045
D19Dcr57 19 47981204 to 47981299 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 57
D19Mit4 19 48032464 to 48032661 197 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 4
Tssr5545 19 48063563 to 48063566 3 + TSS region transcription start site region 5545
Tssr159782 19 48127390 to 48127393 3 - TSS region transcription start site region 159782
D19Dcr58 19 48180641 to 48180752 111 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 58
Cpgi11046 19 48204015 to 48204417 402 CpG island CpG island 11046
Cpgi11047 19 48204707 to 48206855 2148 CpG island CpG island 11047
Tssr156922 19 48205477 to 48205511 34 + TSS region transcription start site region 156922
Tssr156923 19 48205513 to 48205525 12 + TSS region transcription start site region 156923
Sorcs3 19 48206025 to 48805505 599480 + protein coding gene sortilin-related VPS10 domain containing receptor 3
Tssr156924 19 48206133 to 48206163 30 + TSS region transcription start site region 156924
D19Dcr59 19 48239596 to 48239705 109 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 59
Gm23857 19 48240535 to 48240645 110 - rRNA gene predicted gene, 23857
1700021N20Rik 19 48240773 to 48241113 340 unclassified gene RIKEN cDNA 1700021N20 gene
D19Dcr60 19 48246306 to 48246408 102 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 60
D19Dcr61 19 48297452 to 48297547 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 61
Tssr156925 19 48313346 to 48313351 5 + TSS region transcription start site region 156925
Tssr156926 19 48332176 to 48332184 8 + TSS region transcription start site region 156926
D19Dcr62 19 48394463 to 48394561 98 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 62
D19Dcr63 19 48417106 to 48417207 101 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 63
D19Mit74 19 48534172 to 48534264 92 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 74
Tssr5546 19 48769499 to 48769502 3 + TSS region transcription start site region 5546
4930535F04Rik 19 48990468 to 48991980 1512 unclassified gene RIKEN cDNA 4930535F04 gene
D19Dcr64 19 49142478 to 49142573 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 64
Tssr5547 19 49144734 to 49144738 4 - TSS region transcription start site region 5547
Tssr159783 19 49368310 to 49368316 6 - TSS region transcription start site region 159783
Gm6975 19 49709521 to 49710153 632 - pseudogene predicted gene 6975
Gm27935 19 49709794 to 49709872 78 - miRNA gene predicted gene, 27935
Siah1-ps1 19 49868272 to 49870143 1871 + pseudogene siah E3 ubiquitin protein ligase 1, pseudogene 1
D19Mit3 19 49953729 to 49953927 198 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 3
Lith2 19 50003719 to 50003859 140 QTL lithogenic gene 2
D19Mit58 19 50003719 to 50003859 140 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 58
Rpl13a-ps1 19 50030124 to 50030735 611 - pseudogene ribosomal protein 13A, pseudogene 1
Tssr159784 19 50030519 to 50030529 10 - TSS region transcription start site region 159784
Tssr159785 19 50030751 to 50030767 16 - TSS region transcription start site region 159785
D19Mit122 19 50128109 to 50128231 122 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 122
Sorcs1 19 50143299 to 50678646 535347 - protein coding gene sortilin-related VPS10 domain containing receptor 1
Gm27749 19 50144491 to 50144615 124 + miRNA gene predicted gene, 27749
Gm45352 19 50147014 to 50169777 22763 + antisense lncRNA gene predicted gene 45352
D19Dcr14 19 50249163 to 50249260 97 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 14
Tssr156927 19 50252575 to 50252608 33 + TSS region transcription start site region 156927