Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:47452733-47852933

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149 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3pxd2a 19 47260174 to 47464411 204237 - protein coding gene SH3 and PX domains 2A
Tssr156860 19 47455617 to 47455655 38 + TSS region transcription start site region 156860
Tssr159729 19 47460608 to 47460623 15 - TSS region transcription start site region 159729
Tssr159730 19 47460758 to 47460767 9 - TSS region transcription start site region 159730
Cpgi11031 19 47463399 to 47464888 1489 CpG island CpG island 11031
Tssr159731 19 47464094 to 47464113 19 - TSS region transcription start site region 159731
Tssr159732 19 47464115 to 47464154 39 - TSS region transcription start site region 159732
Tssr159733 19 47464406 to 47464450 44 - TSS region transcription start site region 159733
Tssr159734 19 47464579 to 47464635 56 - TSS region transcription start site region 159734
Gm41858 19 47483840 to 47485344 1504 - lncRNA gene predicted gene, 41858
D19Dcr37 19 47491652 to 47491761 109 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 37
Stn1 19 47501048 to 47537121 36073 - protein coding gene STN1, CST complex subunit
Tssr159735 19 47507850 to 47507857 7 - TSS region transcription start site region 159735
Tssr159736 19 47507873 to 47507893 20 - TSS region transcription start site region 159736
Tssr159737 19 47507894 to 47507912 18 - TSS region transcription start site region 159737
Tssr159738 19 47508760 to 47508777 17 - TSS region transcription start site region 159738
Tssr5544 19 47508955 to 47508964 9 + TSS region transcription start site region 5544
Tssr156861 19 47509209 to 47509241 32 + TSS region transcription start site region 156861
Tssr156862 19 47510627 to 47510649 22 + TSS region transcription start site region 156862
Tssr156863 19 47511004 to 47511025 21 + TSS region transcription start site region 156863
Tssr156864 19 47511103 to 47511111 8 + TSS region transcription start site region 156864
Gm19557 19 47512982 to 47516578 3596 + antisense lncRNA gene predicted gene, 19557
Tssr156865 19 47513278 to 47513287 9 + TSS region transcription start site region 156865
Tssr156866 19 47513343 to 47513363 20 + TSS region transcription start site region 156866
D19Dcr38 19 47519401 to 47519496 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 38
D19Dcr39 19 47522601 to 47522696 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 39
Cpgi11032 19 47526674 to 47526846 172 CpG island CpG island 11032
Cpgi11033 19 47536843 to 47537295 452 CpG island CpG island 11033
Tssr159739 19 47536997 to 47537049 52 - TSS region transcription start site region 159739
Tssr156867 19 47537212 to 47537221 9 + TSS region transcription start site region 156867
Tssr159740 19 47545827 to 47545845 18 - TSS region transcription start site region 159740
D19Dcr40 19 47546695 to 47546790 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 40
D19Dcr41 19 47557688 to 47557783 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 41
Cpgi11034 19 47579175 to 47580610 1435 CpG island CpG island 11034
Tssr156868 19 47579411 to 47579425 14 + TSS region transcription start site region 156868
Tssr156869 19 47579602 to 47579681 79 + TSS region transcription start site region 156869
Tssr156870 19 47579688 to 47579714 26 + TSS region transcription start site region 156870
Tssr156871 19 47579732 to 47579743 11 + TSS region transcription start site region 156871
Slk 19 47580019 to 47645246 65227 + protein coding gene STE20-like kinase
Tssr159741 19 47580501 to 47580547 46 - TSS region transcription start site region 159741
Tssr159742 19 47580888 to 47580892 4 - TSS region transcription start site region 159742
Tssr156872 19 47585313 to 47585320 7 + TSS region transcription start site region 156872
D19Dcr42 19 47587483 to 47587578 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 42
Gm16068 19 47605899 to 47607226 1327 - antisense lncRNA gene predicted gene 16068
Tssr156873 19 47619724 to 47619737 13 + TSS region transcription start site region 156873
Tssr156874 19 47619751 to 47619816 65 + TSS region transcription start site region 156874
Tssr156875 19 47619822 to 47619837 15 + TSS region transcription start site region 156875
Tssr156876 19 47620376 to 47620391 15 + TSS region transcription start site region 156876
Tssr159743 19 47622299 to 47622316 17 - TSS region transcription start site region 159743
Tssr156877 19 47622628 to 47622646 18 + TSS region transcription start site region 156877
Tssr156878 19 47622652 to 47622664 12 + TSS region transcription start site region 156878
D19Dcr43 19 47623296 to 47623445 149 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 43
Tssr156879 19 47625368 to 47625389 21 + TSS region transcription start site region 156879
Tssr156880 19 47625428 to 47625449 21 + TSS region transcription start site region 156880
D19Dcr44 19 47628832 to 47628956 124 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 44
Tssr156881 19 47636429 to 47636442 13 + TSS region transcription start site region 156881
D19Dcr96 19 47640298 to 47640393 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 96
D19Dcr97 19 47643317 to 47643412 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 97
D19Dcr45 19 47645830 to 47645925 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 45
Col17a1 19 47646341 to 47692042 45701 - protein coding gene collagen, type XVII, alpha 1
D19Dcr98 19 47646663 to 47646764 101 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 98
D19Dcr99 19 47647851 to 47647946 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 99
D19Dcr100 19 47647880 to 47647988 108 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 100
D19Dcr101 19 47648378 to 47648473 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 101
D19Dcr141a 19 47648489 to 47648596 107 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 141a
D19Dcr102 19 47648583 to 47648679 96 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 102
D19Dcr46 19 47649571 to 47649666 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 46
D19Dcr103 19 47650706 to 47650806 100 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 103
D19Dcr104 19 47651732 to 47651827 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 104
D19Dcr48 19 47652733 to 47652933 200 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 48
D19Dcr47 19 47652812 to 47652908 96 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 47
D19Dcr105 19 47653520 to 47653615 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 105
D19Dcr106 19 47654746 to 47654841 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 106
D19Dcr107 19 47655599 to 47655694 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 107
D19Dcr108 19 47656623 to 47656718 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 108
D19Dcr109 19 47657599 to 47657695 96 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 109
D19Dcr110 19 47659133 to 47659228 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 110
D19Dcr111 19 47660039 to 47660143 104 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 111
D19Dcr112 19 47660989 to 47661084 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 112
D19Dcr113 19 47661799 to 47661894 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 113
D19Dcr114 19 47662953 to 47663048 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 114
D19Dcr115 19 47663527 to 47663622 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 115
D19Dcr116 19 47665201 to 47665296 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 116
D19Dcr117 19 47665555 to 47665676 121 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 117
D19Dcr118 19 47666615 to 47666710 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 118
D19Dcr119 19 47668116 to 47668253 137 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 119
D19Dcr120 19 47668561 to 47668656 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 120
Tssr159744 19 47669297 to 47669300 3 - TSS region transcription start site region 159744
D19Dcr121 19 47669781 to 47669876 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 121
D19Dcr50 19 47670550 to 47670757 207 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 50
D19Dcr49 19 47670618 to 47670720 102 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 49
D19Dcr52 19 47672145 to 47672345 200 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 52
D19Dcr51 19 47672219 to 47672314 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 51
D19Dcr122 19 47672840 to 47672937 97 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 122
D19Dcr123 19 47673607 to 47673702 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 123
D19Dcr124 19 47674572 to 47674667 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 124
D19Dcr125 19 47675632 to 47675727 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 125
D19Dcr126 19 47677242 to 47677337 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 126
D19Dcr127 19 47677952 to 47678047 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 127
D19Dcr128 19 47678736 to 47678831 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 128
D19Dcr129 19 47680208 to 47680303 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 129
D19Dcr130 19 47680972 to 47681067 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 130
Tssr159745 19 47681487 to 47681498 11 - TSS region transcription start site region 159745
D19Dcr131 19 47682019 to 47682114 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 131
D19Dcr132 19 47682881 to 47682976 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 132
D19Dcr133 19 47683906 to 47684001 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 133
D19Dcr134 19 47684993 to 47685088 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 134
D19Dcr53 19 47685624 to 47685719 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 53
D19Dcr135 19 47687152 to 47687275 123 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 135
D19Dcr136 19 47688158 to 47688277 119 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 136
D19Dcr137 19 47688930 to 47689025 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 137
D19Dcr138 19 47689703 to 47689798 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 138
D19Dcr139 19 47690682 to 47690777 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 139
Tssr159746 19 47691848 to 47691875 27 - TSS region transcription start site region 159746
Tssr159747 19 47691884 to 47691904 20 - TSS region transcription start site region 159747
Tssr159748 19 47691909 to 47691912 3 - TSS region transcription start site region 159748
Tssr159749 19 47691946 to 47691979 33 - TSS region transcription start site region 159749
Tssr159750 19 47692007 to 47692027 20 - TSS region transcription start site region 159750
Tssr159751 19 47692028 to 47692033 5 - TSS region transcription start site region 159751
Tssr159752 19 47692042 to 47692053 11 - TSS region transcription start site region 159752
D19Dcr140 19 47692057 to 47692152 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 140
Tssr159753 19 47692089 to 47692096 7 - TSS region transcription start site region 159753
D19Dcr54 19 47696877 to 47696975 98 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 54
Tssr159754 19 47705624 to 47705633 9 - TSS region transcription start site region 159754
Tssr156882 19 47705783 to 47705806 23 + TSS region transcription start site region 156882
Tssr156883 19 47705941 to 47705946 5 + TSS region transcription start site region 156883
Gm26085 19 47710866 to 47710981 115 + snoRNA gene predicted gene, 26085
Gm24805 19 47714784 to 47714887 103 - snRNA gene predicted gene, 24805
D19Dcr55 19 47728013 to 47728108 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 55
Cpgi11035 19 47730886 to 47732121 1235 CpG island CpG island 11035
Tssr156884 19 47731743 to 47731768 25 + TSS region transcription start site region 156884
Sfr1 19 47731756 to 47735588 3832 + protein coding gene SWI5 dependent recombination repair 1
Tssr156885 19 47731774 to 47731797 23 + TSS region transcription start site region 156885
Tssr156886 19 47732945 to 47732950 5 + TSS region transcription start site region 156886
Tssr156887 19 47733652 to 47733665 13 + TSS region transcription start site region 156887
Cfap43 19 47735267 to 47837837 102570 - protein coding gene cilia and flagella associated protein 43
Mir8090 19 47755022 to 47755157 135 - miRNA gene microRNA 8090
Cpgi11036 19 47755641 to 47755940 299 CpG island CpG island 11036
Cpgi11037 19 47786755 to 47787115 360 CpG island CpG island 11037
Tssr159755 19 47787107 to 47787129 22 - TSS region transcription start site region 159755
D19Dcr56 19 47788541 to 47788651 110 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 56
Cpgi11038 19 47813125 to 47813310 185 CpG island CpG island 11038
D19Mit83 19 47831148 to 47831274 126 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 83
Tssr156888 19 47834936 to 47834945 9 + TSS region transcription start site region 156888
Tssr159756 19 47835939 to 47835982 43 - TSS region transcription start site region 159756
Cpgi11039 19 47837047 to 47837736 689 CpG island CpG island 11039
Tssr159757 19 47837262 to 47837275 13 - TSS region transcription start site region 159757
Tssr159758 19 47837291 to 47837305 14 - TSS region transcription start site region 159758
Tssr159759 19 47837378 to 47837424 46 - TSS region transcription start site region 159759