Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:47250603-47650652

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Neurl1a 19 47178820 to 47259440 80620 + protein coding gene neuralized E3 ubiquitin protein ligase 1A
Cpgi11025 19 47252886 to 47253898 1012 CpG island CpG island 11025
Tssr156858 19 47253417 to 47253447 30 + TSS region transcription start site region 156858
Sh3pxd2a 19 47260174 to 47464411 204237 - protein coding gene SH3 and PX domains 2A
Tssr159709 19 47266121 to 47266130 9 - TSS region transcription start site region 159709
Tssr159710 19 47266880 to 47266886 6 - TSS region transcription start site region 159710
Cpgi11026 19 47267142 to 47267507 365 CpG island CpG island 11026
Tssr159711 19 47268782 to 47268806 24 - TSS region transcription start site region 159711
Tssr159712 19 47272033 to 47272058 25 - TSS region transcription start site region 159712
Tssr159713 19 47272477 to 47272481 4 - TSS region transcription start site region 159713
Mir6995 19 47273519 to 47273589 70 - miRNA gene microRNA 6995
Gm29834 19 47286725 to 47293330 6605 + lncRNA gene predicted gene, 29834
Cpgi11027 19 47305253 to 47305502 249 CpG island CpG island 11027
Cpgi11028 19 47313799 to 47314494 695 CpG island CpG island 11028
Tssr159714 19 47314375 to 47314383 8 - TSS region transcription start site region 159714
Tssr159715 19 47314705 to 47314719 14 - TSS region transcription start site region 159715
Tssr159716 19 47314745 to 47314761 16 - TSS region transcription start site region 159716
Tssr159717 19 47314764 to 47314788 24 - TSS region transcription start site region 159717
Tssr159718 19 47314790 to 47314807 17 - TSS region transcription start site region 159718
Tssr159719 19 47314818 to 47314829 11 - TSS region transcription start site region 159719
Tssr159720 19 47320379 to 47320440 61 - TSS region transcription start site region 159720
Cpgi11029 19 47342880 to 47344187 1307 CpG island CpG island 11029
Tssr159721 19 47343576 to 47343591 15 - TSS region transcription start site region 159721
Tssr159722 19 47343593 to 47343652 59 - TSS region transcription start site region 159722
Cpgi11030 19 47348765 to 47348925 160 CpG island CpG island 11030
D19Dcr95 19 47353341 to 47353452 111 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 95
Tssr159723 19 47373663 to 47373679 16 - TSS region transcription start site region 159723
Tssr159724 19 47416147 to 47416162 15 - TSS region transcription start site region 159724
Tssr159725 19 47416188 to 47416202 14 - TSS region transcription start site region 159725
Tssr159726 19 47416317 to 47416328 11 - TSS region transcription start site region 159726
Gm36885 19 47426070 to 47435135 9065 + lncRNA gene predicted gene, 36885
Tssr159727 19 47432625 to 47432642 17 - TSS region transcription start site region 159727
Tssr159728 19 47450603 to 47450652 49 - TSS region transcription start site region 159728
Tssr156859 19 47451097 to 47451103 6 + TSS region transcription start site region 156859
Tssr156860 19 47455617 to 47455655 38 + TSS region transcription start site region 156860
Tssr159729 19 47460608 to 47460623 15 - TSS region transcription start site region 159729
Tssr159730 19 47460758 to 47460767 9 - TSS region transcription start site region 159730
Cpgi11031 19 47463399 to 47464888 1489 CpG island CpG island 11031
Tssr159731 19 47464094 to 47464113 19 - TSS region transcription start site region 159731
Tssr159732 19 47464115 to 47464154 39 - TSS region transcription start site region 159732
Tssr159733 19 47464406 to 47464450 44 - TSS region transcription start site region 159733
Tssr159734 19 47464579 to 47464635 56 - TSS region transcription start site region 159734
Gm41858 19 47483840 to 47485344 1504 - lncRNA gene predicted gene, 41858
D19Dcr37 19 47491652 to 47491761 109 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 37
Stn1 19 47501048 to 47537121 36073 - protein coding gene STN1, CST complex subunit
Tssr159735 19 47507850 to 47507857 7 - TSS region transcription start site region 159735
Tssr159736 19 47507873 to 47507893 20 - TSS region transcription start site region 159736
Tssr159737 19 47507894 to 47507912 18 - TSS region transcription start site region 159737
Tssr159738 19 47508760 to 47508777 17 - TSS region transcription start site region 159738
Tssr5544 19 47508955 to 47508964 9 + TSS region transcription start site region 5544
Tssr156861 19 47509209 to 47509241 32 + TSS region transcription start site region 156861
Tssr156862 19 47510627 to 47510649 22 + TSS region transcription start site region 156862
Tssr156863 19 47511004 to 47511025 21 + TSS region transcription start site region 156863
Tssr156864 19 47511103 to 47511111 8 + TSS region transcription start site region 156864
Gm19557 19 47512982 to 47516578 3596 + antisense lncRNA gene predicted gene, 19557
Tssr156865 19 47513278 to 47513287 9 + TSS region transcription start site region 156865
Tssr156866 19 47513343 to 47513363 20 + TSS region transcription start site region 156866
D19Dcr38 19 47519401 to 47519496 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 38
D19Dcr39 19 47522601 to 47522696 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 39
Cpgi11032 19 47526674 to 47526846 172 CpG island CpG island 11032
Cpgi11033 19 47536843 to 47537295 452 CpG island CpG island 11033
Tssr159739 19 47536997 to 47537049 52 - TSS region transcription start site region 159739
Tssr156867 19 47537212 to 47537221 9 + TSS region transcription start site region 156867
Tssr159740 19 47545827 to 47545845 18 - TSS region transcription start site region 159740
D19Dcr40 19 47546695 to 47546790 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 40
D19Dcr41 19 47557688 to 47557783 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 41
Cpgi11034 19 47579175 to 47580610 1435 CpG island CpG island 11034
Tssr156868 19 47579411 to 47579425 14 + TSS region transcription start site region 156868
Tssr156869 19 47579602 to 47579681 79 + TSS region transcription start site region 156869
Tssr156870 19 47579688 to 47579714 26 + TSS region transcription start site region 156870
Tssr156871 19 47579732 to 47579743 11 + TSS region transcription start site region 156871
Slk 19 47580019 to 47645246 65227 + protein coding gene STE20-like kinase
Tssr159741 19 47580501 to 47580547 46 - TSS region transcription start site region 159741
Tssr159742 19 47580888 to 47580892 4 - TSS region transcription start site region 159742
Tssr156872 19 47585313 to 47585320 7 + TSS region transcription start site region 156872
D19Dcr42 19 47587483 to 47587578 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 42
Gm16068 19 47605899 to 47607226 1327 - antisense lncRNA gene predicted gene 16068
Tssr156873 19 47619724 to 47619737 13 + TSS region transcription start site region 156873
Tssr156874 19 47619751 to 47619816 65 + TSS region transcription start site region 156874
Tssr156875 19 47619822 to 47619837 15 + TSS region transcription start site region 156875
Tssr156876 19 47620376 to 47620391 15 + TSS region transcription start site region 156876
Tssr159743 19 47622299 to 47622316 17 - TSS region transcription start site region 159743
Tssr156877 19 47622628 to 47622646 18 + TSS region transcription start site region 156877
Tssr156878 19 47622652 to 47622664 12 + TSS region transcription start site region 156878
D19Dcr43 19 47623296 to 47623445 149 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 43
Tssr156879 19 47625368 to 47625389 21 + TSS region transcription start site region 156879
Tssr156880 19 47625428 to 47625449 21 + TSS region transcription start site region 156880
D19Dcr44 19 47628832 to 47628956 124 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 44
Tssr156881 19 47636429 to 47636442 13 + TSS region transcription start site region 156881
D19Dcr96 19 47640298 to 47640393 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 96
D19Dcr97 19 47643317 to 47643412 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 97
D19Dcr45 19 47645830 to 47645925 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 45
Col17a1 19 47646341 to 47692042 45701 - protein coding gene collagen, type XVII, alpha 1
D19Dcr98 19 47646663 to 47646764 101 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 98
D19Dcr99 19 47647851 to 47647946 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 99
D19Dcr100 19 47647880 to 47647988 108 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 100
D19Dcr101 19 47648378 to 47648473 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 101
D19Dcr141a 19 47648489 to 47648596 107 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 141a
D19Dcr102 19 47648583 to 47648679 96 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 102
D19Dcr46 19 47649571 to 47649666 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 46