Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:47020748-47160800

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ina 19 47014698 to 47024358 9660 + protein coding gene internexin neuronal intermediate filament protein, alpha
Tssr5542 19 47023371 to 47023382 11 + TSS region transcription start site region 5542
Tssr156830 19 47023387 to 47023400 13 + TSS region transcription start site region 156830
Tssr156831 19 47023444 to 47023460 16 + TSS region transcription start site region 156831
Tssr156832 19 47023500 to 47023513 13 + TSS region transcription start site region 156832
Tssr156833 19 47023545 to 47023556 11 + TSS region transcription start site region 156833
Tssr156834 19 47023571 to 47023582 11 + TSS region transcription start site region 156834
Tssr156835 19 47023809 to 47023820 11 + TSS region transcription start site region 156835
Tssr156836 19 47023837 to 47023848 11 + TSS region transcription start site region 156836
Tssr156837 19 47023924 to 47023934 10 + TSS region transcription start site region 156837
Tssr156838 19 47024048 to 47024059 11 + TSS region transcription start site region 156838
Tssr156839 19 47024651 to 47024663 12 + TSS region transcription start site region 156839
Tssr156840 19 47024727 to 47024738 11 + TSS region transcription start site region 156840
Tssr156841 19 47024758 to 47024776 18 + TSS region transcription start site region 156841
Tssr156842 19 47024978 to 47024986 8 + TSS region transcription start site region 156842
Tssr156843 19 47025253 to 47025269 16 + TSS region transcription start site region 156843
Pcgf6 19 47033619 to 47050845 17226 - protein coding gene polycomb group ring finger 6
Cpgi11016 19 47050240 to 47051125 885 CpG island CpG island 11016
Tssr159691 19 47050326 to 47050374 48 - TSS region transcription start site region 159691
Tssr159692 19 47050823 to 47050915 92 - TSS region transcription start site region 159692
Gm23140 19 47058162 to 47058268 106 + snRNA gene predicted gene, 23140
Cpgi11017 19 47067489 to 47068684 1195 CpG island CpG island 11017
Tssr156844 19 47067721 to 47067768 47 + TSS region transcription start site region 156844
Taf5 19 47067748 to 47083479 15731 + protein coding gene TATA-box binding protein associated factor 5
Tssr159693 19 47068378 to 47068402 24 - TSS region transcription start site region 159693
Tssr159694 19 47068412 to 47068423 11 - TSS region transcription start site region 159694
Atp5md 19 47083471 to 47090625 7154 - protein coding gene ATP synthase membrane subunit DAPIT
D19Dcr89 19 47083655 to 47083750 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 89
Cpgi11018 19 47090021 to 47091170 1149 CpG island CpG island 11018
Tssr159695 19 47090610 to 47090655 45 - TSS region transcription start site region 159695
Tssr159696 19 47090678 to 47090683 5 - TSS region transcription start site region 159696
Tssr159697 19 47090701 to 47090704 3 - TSS region transcription start site region 159697
Tssr156845 19 47090748 to 47090800 52 + TSS region transcription start site region 156845
Pdcd11 19 47090766 to 47131143 40377 + protein coding gene programmed cell death 11
Tssr156846 19 47090810 to 47090813 3 + TSS region transcription start site region 156846
Tssr159698 19 47090865 to 47090878 13 - TSS region transcription start site region 159698
Tssr156847 19 47091005 to 47091037 32 + TSS region transcription start site region 156847
D19Dcr90 19 47101541 to 47101641 100 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 90
D930027P08Rik 19 47126149 to 47131250 5101 unclassified gene RIKEN cDNA D930027P08 gene
Tssr159699 19 47131981 to 47132004 23 - TSS region transcription start site region 159699
Tssr159700 19 47132054 to 47132071 17 - TSS region transcription start site region 159700
Calhm2 19 47132232 to 47138294 6062 - protein coding gene calcium homeostasis modulator family member 2
Cpgi11019 19 47132861 to 47133141 280 CpG island CpG island 11019
Cpgi11020 19 47138026 to 47138365 339 CpG island CpG island 11020
Tssr159701 19 47138140 to 47138150 10 - TSS region transcription start site region 159701
Tssr159702 19 47138179 to 47138190 11 - TSS region transcription start site region 159702
Tssr159703 19 47138214 to 47138237 23 - TSS region transcription start site region 159703
Tssr159704 19 47138250 to 47138276 26 - TSS region transcription start site region 159704
Tssr159705 19 47138280 to 47138300 20 - TSS region transcription start site region 159705
Tssr159706 19 47138304 to 47138309 5 - TSS region transcription start site region 159706
Calhm1 19 47141035 to 47144174 3139 - protein coding gene calcium homeostasis modulator 1
Lfibq11 19 47144139 to 47864318 720179 QTL liver fibrosis QTL 11
Cpgi11021 19 47151652 to 47152179 527 CpG island CpG island 11021
Calhm3 19 47151699 to 47157764 6065 - protein coding gene calcium homeostasis modulator 3
D19Mit8 19 47152785 to 47152981 196 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 8
Fembm7 19 47152785 to 47152981 196 QTL femoral bone morphometry 7
Pas13 19 47152792 to 47152941 149 QTL pulmonary adenoma susceptibility 13
Cd8mts6 19 47152792 to 47152941 149 QTL CD8 memory T cell subset 6
D19Mit10 19 47152792 to 47152941 149 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 10