Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:46305839-46725856

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi10988 19 46304215 to 46306128 1913 CpG island CpG island 10988
Nfkb2 19 46304737 to 46312090 7353 + protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100
Tssr156727 19 46305856 to 46305870 14 + TSS region transcription start site region 156727
Tssr156728 19 46305884 to 46305907 23 + TSS region transcription start site region 156728
Tssr156729 19 46305909 to 46305927 18 + TSS region transcription start site region 156729
Tssr156730 19 46305943 to 46305961 18 + TSS region transcription start site region 156730
Tssr156731 19 46305972 to 46305981 9 + TSS region transcription start site region 156731
Tssr156732 19 46306023 to 46306032 9 + TSS region transcription start site region 156732
Tssr156733 19 46306093 to 46306109 16 + TSS region transcription start site region 156733
Tssr156734 19 46306117 to 46306154 37 + TSS region transcription start site region 156734
Tssr156735 19 46306160 to 46306171 11 + TSS region transcription start site region 156735
Tssr156736 19 46306243 to 46306255 12 + TSS region transcription start site region 156736
Tssr156737 19 46306258 to 46306263 5 + TSS region transcription start site region 156737
Tssr156738 19 46307351 to 46307373 22 + TSS region transcription start site region 156738
Tssr156739 19 46308224 to 46308231 7 + TSS region transcription start site region 156739
Cpgi10989 19 46308291 to 46308575 284 CpG island CpG island 10989
Cpgi10990 19 46308665 to 46309434 769 CpG island CpG island 10990
Tssr156740 19 46308835 to 46308846 11 + TSS region transcription start site region 156740
Cpgi10991 19 46309702 to 46310015 313 CpG island CpG island 10991
Tssr156741 19 46310205 to 46310230 25 + TSS region transcription start site region 156741
Tssr156742 19 46310302 to 46310317 15 + TSS region transcription start site region 156742
Psd 19 46312087 to 46327156 15069 - protein coding gene pleckstrin and Sec7 domain containing
Tssr159620 19 46312369 to 46312385 16 - TSS region transcription start site region 159620
Cpgi10992 19 46314633 to 46314803 170 CpG island CpG island 10992
Cpgi10993 19 46316949 to 46318587 1638 CpG island CpG island 10993
Tssr159621 19 46317957 to 46317960 3 - TSS region transcription start site region 159621
Tssr159622 19 46317962 to 46317965 3 - TSS region transcription start site region 159622
Tssr159623 19 46317982 to 46318062 80 - TSS region transcription start site region 159623
Tssr159624 19 46318066 to 46318077 11 - TSS region transcription start site region 159624
Tssr159625 19 46318123 to 46318147 24 - TSS region transcription start site region 159625
Tssr159626 19 46324697 to 46324728 31 - TSS region transcription start site region 159626
Tssr159627 19 46324829 to 46324845 16 - TSS region transcription start site region 159627
Cpgi10994 19 46326146 to 46327340 1194 CpG island CpG island 10994
Tssr159628 19 46326189 to 46326211 22 - TSS region transcription start site region 159628
Tssr159629 19 46326220 to 46326277 57 - TSS region transcription start site region 159629
Tssr159630 19 46326543 to 46326598 55 - TSS region transcription start site region 159630
Tssr159631 19 46327052 to 46327057 5 - TSS region transcription start site region 159631
Tssr159632 19 46327106 to 46327114 8 - TSS region transcription start site region 159632
Tssr159633 19 46327121 to 46327154 33 - TSS region transcription start site region 159633
Tssr159634 19 46327164 to 46327173 9 - TSS region transcription start site region 159634
Cpgi10995 19 46328093 to 46329671 1578 CpG island CpG island 10995
Tssr156743 19 46328179 to 46328205 26 + TSS region transcription start site region 156743
Fbxl15 19 46328184 to 46330446 2262 + protein coding gene F-box and leucine-rich repeat protein 15
Tssr156744 19 46328221 to 46328232 11 + TSS region transcription start site region 156744
Tssr159635 19 46328432 to 46328452 20 - TSS region transcription start site region 159635
Tssr156745 19 46328448 to 46328474 26 + TSS region transcription start site region 156745
Tssr156746 19 46328703 to 46328768 65 + TSS region transcription start site region 156746
Cuedc2 19 46329812 to 46338660 8848 - protein coding gene CUE domain containing 2
Cpgi10996 19 46329982 to 46330293 311 CpG island CpG island 10996
Tssr159636 19 46332695 to 46332708 13 - TSS region transcription start site region 159636
Tssr159637 19 46332776 to 46332791 15 - TSS region transcription start site region 159637
Tssr159638 19 46332799 to 46332810 11 - TSS region transcription start site region 159638
Tssr159639 19 46332870 to 46332903 33 - TSS region transcription start site region 159639
Tssr159640 19 46332914 to 46332928 14 - TSS region transcription start site region 159640
Gm26792 19 46335287 to 46338538 3251 + lincRNA gene predicted gene, 26792
Tssr159641 19 46338374 to 46338403 29 - TSS region transcription start site region 159641
Cpgi10997 19 46338406 to 46338726 320 CpG island CpG island 10997
Tssr159642 19 46338589 to 46338630 41 - TSS region transcription start site region 159642
Tssr159643 19 46338632 to 46338670 38 - TSS region transcription start site region 159643
Gm36493 19 46338776 to 46344131 5355 + lncRNA gene predicted gene, 36493
31.MMHAP38FLC4 19 46338820 to 46338995 175 DNA segment DNA segment, 31.MMHAP38FLC4
Tssr156747 19 46341118 to 46341122 4 + TSS region transcription start site region 156747
Mir146b 19 46342762 to 46342870 108 + miRNA gene microRNA 146b
2310034G01Rik 19 46348201 to 46348988 787 - lincRNA gene RIKEN cDNA 2310034G01 gene
Cpgi10998 19 46348591 to 46349916 1325 CpG island CpG island 10998
Tssr159644 19 46348968 to 46349001 33 - TSS region transcription start site region 159644
Tssr5536 19 46349043 to 46349103 60 + TSS region transcription start site region 5536
Tssr159645 19 46350246 to 46350279 33 - TSS region transcription start site region 159645
Cpgi10999 19 46356701 to 46357138 437 CpG island CpG island 10999
Mfsd13a 19 46356877 to 46375254 18377 + protein coding gene major facilitator superfamily domain containing 13a
Tssr156748 19 46356897 to 46356942 45 + TSS region transcription start site region 156748
Tssr5537 19 46356946 to 46356949 3 + TSS region transcription start site region 5537
Gm24610 19 46359036 to 46359144 108 + snoRNA gene predicted gene, 24610
Cpgi11000 19 46367871 to 46368254 383 CpG island CpG island 11000
Tssr156749 19 46367978 to 46367988 10 + TSS region transcription start site region 156749
Tssr156750 19 46369252 to 46369277 25 + TSS region transcription start site region 156750
Actr1a 19 46376814 to 46395735 18921 - protein coding gene ARP1 actin-related protein 1A, centractin alpha
Tssr159646 19 46377994 to 46378024 30 - TSS region transcription start site region 159646
Tssr159647 19 46378151 to 46378196 45 - TSS region transcription start site region 159647
Tssr159648 19 46379473 to 46379477 4 - TSS region transcription start site region 159648
Tssr159649 19 46380965 to 46380969 4 - TSS region transcription start site region 159649
Cpgi11001 19 46394827 to 46395902 1075 CpG island CpG island 11001
Tssr156751 19 46395353 to 46395365 12 + TSS region transcription start site region 156751
Tssr156752 19 46395374 to 46395393 19 + TSS region transcription start site region 156752
Tssr159650 19 46395722 to 46395756 34 - TSS region transcription start site region 159650
Cpgi11002 19 46396690 to 46397425 735 CpG island CpG island 11002
Tssr156753 19 46396885 to 46396999 114 + TSS region transcription start site region 156753
Sufu 19 46396896 to 46488804 91908 + protein coding gene SUFU negative regulator of hedgehog signaling
Tssr156754 19 46397009 to 46397033 24 + TSS region transcription start site region 156754
9430020M11Rik 19 46426854 to 46427655 801 unclassified gene RIKEN cDNA 9430020M11 gene
Tssr156755 19 46454693 to 46454705 12 + TSS region transcription start site region 156755
Tssr156756 19 46463942 to 46463944 2 + TSS region transcription start site region 156756
Cpgi11003 19 46499809 to 46500513 704 CpG island CpG island 11003
Tssr156757 19 46500042 to 46500056 14 + TSS region transcription start site region 156757
Tssr156758 19 46500167 to 46500197 30 + TSS region transcription start site region 156758
Tssr156759 19 46500201 to 46500230 29 + TSS region transcription start site region 156759
Tssr156760 19 46500234 to 46500259 25 + TSS region transcription start site region 156760
Tssr156761 19 46500611 to 46500651 40 + TSS region transcription start site region 156761
Tssr156762 19 46500756 to 46500770 14 + TSS region transcription start site region 156762
Cpgi11004 19 46500770 to 46503221 2451 CpG island CpG island 11004
Tssr156763 19 46500826 to 46500837 11 + TSS region transcription start site region 156763
Tssr159651 19 46500940 to 46500945 5 - TSS region transcription start site region 159651
Tssr156764 19 46500988 to 46501000 12 + TSS region transcription start site region 156764
Tssr156765 19 46501167 to 46501197 30 + TSS region transcription start site region 156765
Tssr156766 19 46501431 to 46501471 40 + TSS region transcription start site region 156766
Gm9798 19 46501647 to 46502781 1134 unclassified gene predicted gene 9798
Trim8 19 46501648 to 46516444 14796 + protein coding gene tripartite motif-containing 8
Tssr156767 19 46501664 to 46501675 11 + TSS region transcription start site region 156767
Tssr156768 19 46501685 to 46501707 22 + TSS region transcription start site region 156768
Tssr156769 19 46501715 to 46501733 18 + TSS region transcription start site region 156769
Tssr156770 19 46501738 to 46501773 35 + TSS region transcription start site region 156770
Tssr156771 19 46501790 to 46501802 12 + TSS region transcription start site region 156771
Tssr156772 19 46501812 to 46501832 20 + TSS region transcription start site region 156772
Tssr156773 19 46502290 to 46502325 35 + TSS region transcription start site region 156773
Tssr156774 19 46502880 to 46502912 32 + TSS region transcription start site region 156774
Tssr159652 19 46502936 to 46502950 14 - TSS region transcription start site region 159652
Tssr159653 19 46503676 to 46503696 20 - TSS region transcription start site region 159653
Tssr156775 19 46511154 to 46511158 4 + TSS region transcription start site region 156775
Tssr156776 19 46514616 to 46514631 15 + TSS region transcription start site region 156776
Cpgi11005 19 46515013 to 46515667 654 CpG island CpG island 11005
Tssr156777 19 46515322 to 46515340 18 + TSS region transcription start site region 156777
Tssr156778 19 46515714 to 46515762 48 + TSS region transcription start site region 156778
Tssr156779 19 46515839 to 46515856 17 + TSS region transcription start site region 156779
Tssr156780 19 46516153 to 46516179 26 + TSS region transcription start site region 156780
Tssr156781 19 46516187 to 46516203 16 + TSS region transcription start site region 156781
Tssr156782 19 46516253 to 46516309 56 + TSS region transcription start site region 156782
Cpgi11006 19 46528646 to 46529024 378 CpG island CpG island 11006
Arl3 19 46531109 to 46573085 41976 - protein coding gene ADP-ribosylation factor-like 3
Tssr159654 19 46558297 to 46558333 36 - TSS region transcription start site region 159654
Tssr5538 19 46558774 to 46558800 26 - TSS region transcription start site region 5538
Cpgi11007 19 46572599 to 46573925 1326 CpG island CpG island 11007
Tssr159655 19 46573059 to 46573082 23 - TSS region transcription start site region 159655
Tssr159656 19 46573096 to 46573207 111 - TSS region transcription start site region 159656
Tssr156783 19 46573362 to 46573421 59 + TSS region transcription start site region 156783
Sfxn2 19 46573365 to 46596898 23533 + protein coding gene sideroflexin 2
Tssr156784 19 46573422 to 46573436 14 + TSS region transcription start site region 156784
Tssr156785 19 46595123 to 46595126 3 + TSS region transcription start site region 156785
Cpgi11008 19 46598830 to 46599689 859 CpG island CpG island 11008
Tssr156786 19 46599081 to 46599150 69 + TSS region transcription start site region 156786
Wbp1l 19 46599106 to 46657389 58283 + protein coding gene WW domain binding protein 1 like
Tssr156787 19 46599152 to 46599178 26 + TSS region transcription start site region 156787
Tssr156788 19 46612485 to 46612494 9 + TSS region transcription start site region 156788
Tssr156789 19 46618647 to 46618653 6 + TSS region transcription start site region 156789
Cpgi11009 19 46618961 to 46619263 302 CpG island CpG island 11009
Tssr159657 19 46619960 to 46619970 10 - TSS region transcription start site region 159657
Tssr159658 19 46619971 to 46620001 30 - TSS region transcription start site region 159658
Tssr156790 19 46623387 to 46623451 64 + TSS region transcription start site region 156790
Tssr156791 19 46624370 to 46624386 16 + TSS region transcription start site region 156791
Tssr5539 19 46635823 to 46635831 8 + TSS region transcription start site region 5539
Tssr156792 19 46652722 to 46652740 18 + TSS region transcription start site region 156792
Tssr156793 19 46654003 to 46654027 24 + TSS region transcription start site region 156793
Tssr156794 19 46654033 to 46654041 8 + TSS region transcription start site region 156794
Tssr156795 19 46654105 to 46654134 29 + TSS region transcription start site region 156795
Tssr156796 19 46654371 to 46654418 47 + TSS region transcription start site region 156796
Tssr156797 19 46654610 to 46654636 26 + TSS region transcription start site region 156797
Tssr156798 19 46654821 to 46654843 22 + TSS region transcription start site region 156798
Tssr5540 19 46654921 to 46654959 38 - TSS region transcription start site region 5540
Tssr156799 19 46654929 to 46654959 30 + TSS region transcription start site region 156799
Gm36602 19 46657734 to 46666450 8716 - lncRNA gene predicted gene, 36602
Cyp17a1 19 46667165 to 46672974 5809 - protein coding gene cytochrome P450, family 17, subfamily a, polypeptide 1
Tssr156800 19 46668587 to 46668603 16 + TSS region transcription start site region 156800
Gm41857 19 46668680 to 46676083 7403 + lncRNA gene predicted gene, 41857
Tssr156801 19 46669272 to 46669274 2 + TSS region transcription start site region 156801
Tssr159659 19 46670711 to 46670721 10 - TSS region transcription start site region 159659
Tssr159660 19 46672883 to 46672900 17 - TSS region transcription start site region 159660
Tssr159661 19 46673063 to 46673072 9 - TSS region transcription start site region 159661
Gm6967 19 46674273 to 46675279 1006 - pseudogene predicted gene 6967
Tssr159662 19 46675344 to 46675354 10 - TSS region transcription start site region 159662
Cpgi11010 19 46689691 to 46690352 661 CpG island CpG island 11010
Tssr156802 19 46689902 to 46689943 41 + TSS region transcription start site region 156802
Borcs7 19 46689906 to 46703382 13476 + protein coding gene BLOC-1 related complex subunit 7
Tssr159663 19 46690138 to 46690173 35 - TSS region transcription start site region 159663
Tssr159664 19 46701344 to 46701383 39 - TSS region transcription start site region 159664
Cpgi11011 19 46707339 to 46707628 289 CpG island CpG island 11011
As3mt 19 46707443 to 46741095 33652 + protein coding gene arsenic (+3 oxidation state) methyltransferase
Tssr156803 19 46707449 to 46707511 62 + TSS region transcription start site region 156803
Tssr156804 19 46707658 to 46707708 50 + TSS region transcription start site region 156804
Tssr156805 19 46707721 to 46707732 11 + TSS region transcription start site region 156805
Tssr156806 19 46707735 to 46707758 23 + TSS region transcription start site region 156806