Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:44770331-47320347

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687 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc1 19 36039544 to 46773082 10733538 QTL susceptibility to lung cancer 1
Pax2 19 44756045 to 44837871 81826 + protein coding gene paired box 2
Gm20395 19 44773762 to 44784512 10750 - antisense lncRNA gene predicted gene 20395
Mir6405 19 44808406 to 44808529 123 + miRNA gene microRNA 6405
Tssr156629 19 44825234 to 44825238 4 + TSS region transcription start site region 156629
1700039E22Rik 19 44828493 to 44835938 7445 - antisense lncRNA gene RIKEN cDNA 1700039E22 gene
Cpgi10916 19 44835333 to 44836932 1599 CpG island CpG island 10916
Tssr156630 19 44837341 to 44837345 4 + TSS region transcription start site region 156630
Gm5246 19 44851009 to 44851976 967 + pseudogene predicted gene 5246
D19Mit27 19 44852997 to 44853171 174 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 27
Cpgi10917 19 44867683 to 44867867 184 CpG island CpG island 10917
D19Mit24 19 44872204 to 44872359 155 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 24
Cpgi10918 19 44882073 to 44883060 987 CpG island CpG island 10918
Cpgi10919 19 44893525 to 44893834 309 CpG island CpG island 10919
Cpgi10920 19 44900324 to 44900735 411 CpG island CpG island 10920
Tssr5530 19 44918432 to 44918467 35 + TSS region transcription start site region 5530
Tssr156631 19 44918501 to 44918516 15 + TSS region transcription start site region 156631
Tssr156632 19 44918539 to 44918553 14 + TSS region transcription start site region 156632
Cpgi10921 19 44930750 to 44931661 911 CpG island CpG island 10921
Slf2 19 44931119 to 44983787 52668 + protein coding gene SMC5-SMC6 complex localization factor 2
Tssr156633 19 44931154 to 44931172 18 + TSS region transcription start site region 156633
Tssr156634 19 44935431 to 44935465 34 + TSS region transcription start site region 156634
Gm25482 19 44945022 to 44945128 106 + snRNA gene predicted gene, 25482
Tssr156635 19 44954742 to 44954746 4 + TSS region transcription start site region 156635
Tssr156636 19 44956996 to 44957000 4 + TSS region transcription start site region 156636
Tssr156637 19 44957395 to 44957399 4 + TSS region transcription start site region 156637
4930414N06Rik 19 44972117 to 44984550 12433 - lncRNA gene RIKEN cDNA 4930414N06 gene
Tssr159541 19 44984525 to 44984548 23 - TSS region transcription start site region 159541
Tssr156638 19 44988366 to 44988376 10 + TSS region transcription start site region 156638
Tssr156639 19 44988924 to 44988942 18 + TSS region transcription start site region 156639
Cpgi10922 19 44988937 to 44989808 871 CpG island CpG island 10922
Tssr156640 19 44989073 to 44989100 27 + TSS region transcription start site region 156640
Sema4g 19 44989101 to 45003397 14296 + protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
Tssr156641 19 44989242 to 44989318 76 + TSS region transcription start site region 156641
Tssr156642 19 44989319 to 44989330 11 + TSS region transcription start site region 156642
Tssr156643 19 44990060 to 44990092 32 + TSS region transcription start site region 156643
Tssr156644 19 44992127 to 44992129 2 + TSS region transcription start site region 156644
Tssr156645 19 44992325 to 44992344 19 + TSS region transcription start site region 156645
Tssr156646 19 44992431 to 44992456 25 + TSS region transcription start site region 156646
Tssr156647 19 45002041 to 45002062 21 + TSS region transcription start site region 156647
Mrpl43 19 45005014 to 45006442 1428 - protein coding gene mitochondrial ribosomal protein L43
Tssr156648 19 45005656 to 45005684 28 + TSS region transcription start site region 156648
Cpgi10923 19 45005682 to 45007358 1676 CpG island CpG island 10923
Tssr159542 19 45006111 to 45006122 11 - TSS region transcription start site region 159542
Tssr159543 19 45006385 to 45006450 65 - TSS region transcription start site region 159543
Tssr156649 19 45006475 to 45006524 49 + TSS region transcription start site region 156649
Twnk 19 45006558 to 45012762 6204 + protein coding gene twinkle mtDNA helicase
Tssr156650 19 45006622 to 45006668 46 + TSS region transcription start site region 156650
Tssr156651 19 45014995 to 45015006 11 + TSS region transcription start site region 156651
Tssr156652 19 45015168 to 45015187 19 + TSS region transcription start site region 156652
Cpgi10924 19 45015176 to 45015928 752 CpG island CpG island 10924
Lzts2 19 45015176 to 45027104 11928 + protein coding gene leucine zipper, putative tumor suppressor 2
Tssr156653 19 45015198 to 45015224 26 + TSS region transcription start site region 156653
Tssr156654 19 45015232 to 45015248 16 + TSS region transcription start site region 156654
D19Dcr34 19 45015459 to 45015554 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 34
Tssr156655 19 45016937 to 45016942 5 + TSS region transcription start site region 156655
Tssr156656 19 45017429 to 45017485 56 + TSS region transcription start site region 156656
Cpgi10925 19 45017480 to 45018626 1146 CpG island CpG island 10925
Tssr5531 19 45017632 to 45017674 42 + TSS region transcription start site region 5531
Tssr156657 19 45017689 to 45017702 13 + TSS region transcription start site region 156657
Tssr156658 19 45018051 to 45018063 12 + TSS region transcription start site region 156658
Tssr156659 19 45018114 to 45018153 39 + TSS region transcription start site region 156659
Tssr156660 19 45018154 to 45018197 43 + TSS region transcription start site region 156660
Cpgi10926 19 45024120 to 45024305 185 CpG island CpG island 10926
Cpgi10927 19 45024689 to 45025065 376 CpG island CpG island 10927
Cpgi10928 19 45026074 to 45026343 269 CpG island CpG island 10928
Pdzd7 19 45026906 to 45046614 19708 - protein coding gene PDZ domain containing 7
Cpgi10929 19 45028849 to 45029232 383 CpG island CpG island 10929
9430030N17Rik 19 45030403 to 45031131 728 unclassified gene RIKEN cDNA 9430030N17 gene
Cpgi10930 19 45036712 to 45037148 436 CpG island CpG island 10930
Cpgi10931 19 45039539 to 45040808 1269 CpG island CpG island 10931
Cpgi10932 19 45046315 to 45047973 1658 CpG island CpG island 10932
Tssr159544 19 45046618 to 45046645 27 - TSS region transcription start site region 159544
Tssr156661 19 45047557 to 45047572 15 + TSS region transcription start site region 156661
Sfxn3 19 45047576 to 45056383 8807 + protein coding gene sideroflexin 3
Tssr156662 19 45047598 to 45047670 72 + TSS region transcription start site region 156662
Tssr156663 19 45047781 to 45047838 57 + TSS region transcription start site region 156663
Tssr156664 19 45047845 to 45047873 28 + TSS region transcription start site region 156664
Tssr156665 19 45055294 to 45055308 14 + TSS region transcription start site region 156665
Tssr156666 19 45055359 to 45055373 14 + TSS region transcription start site region 156666
Tssr156667 19 45055563 to 45055575 12 + TSS region transcription start site region 156667
Tssr156668 19 45055703 to 45055735 32 + TSS region transcription start site region 156668
Cpgi10933 19 45058236 to 45058837 601 CpG island CpG island 10933
Tssr5532 19 45058274 to 45058287 13 - TSS region transcription start site region 5532
Tssr5533 19 45058308 to 45058333 25 - TSS region transcription start site region 5533
Tssr156669 19 45058695 to 45058750 55 + TSS region transcription start site region 156669
Gm35782 19 45060632 to 45075109 14477 - lncRNA gene predicted gene, 35782
Cpgi10934 19 45065368 to 45065715 347 CpG island CpG island 10934
Cpgi10935 19 45074540 to 45075636 1096 CpG island CpG island 10935
Tssr159545 19 45075136 to 45075160 24 - TSS region transcription start site region 159545
Tssr159546 19 45075167 to 45075200 33 - TSS region transcription start site region 159546
Kazald1 19 45075241 to 45079289 4048 + protein coding gene Kazal-type serine peptidase inhibitor domain 1
Cpgi10936 19 45075915 to 45076068 153 CpG island CpG island 10936
Tssr156670 19 45076087 to 45076090 3 + TSS region transcription start site region 156670
Tssr156671 19 45076105 to 45076111 6 + TSS region transcription start site region 156671
Cpgi10937 19 45076117 to 45077863 1746 CpG island CpG island 10937
Tssr156672 19 45076191 to 45076195 4 + TSS region transcription start site region 156672
Tssr156673 19 45076636 to 45076644 8 + TSS region transcription start site region 156673
Tssr156674 19 45076684 to 45076702 18 + TSS region transcription start site region 156674
Tssr156675 19 45076707 to 45076727 20 + TSS region transcription start site region 156675
Tssr156676 19 45076899 to 45076939 40 + TSS region transcription start site region 156676
Cpgi10938 19 45079720 to 45080967 1247 CpG island CpG island 10938
4930557B21Rik 19 45080007 to 45080582 575 unclassified gene RIKEN cDNA 4930557B21 gene
Tssr156677 19 45087037 to 45087049 12 + TSS region transcription start site region 156677
Gm35867 19 45103108 to 45106404 3296 + lncRNA gene predicted gene, 35867
Cpgi10939 19 45143218 to 45143951 733 CpG island CpG island 10939
Gm35923 19 45144743 to 45146954 2211 - lncRNA gene predicted gene, 35923
Tssr156678 19 45149833 to 45149878 45 + TSS region transcription start site region 156678
Cpgi10940 19 45150471 to 45151686 1215 CpG island CpG island 10940
Tssr159547 19 45150503 to 45150537 34 - TSS region transcription start site region 159547
Tssr156679 19 45150659 to 45150696 37 + TSS region transcription start site region 156679
Tlx1 19 45150680 to 45156943 6263 + protein coding gene T cell leukemia, homeobox 1
Tssr156680 19 45150786 to 45150814 28 + TSS region transcription start site region 156680
Tssr156681 19 45151594 to 45151595 1 + TSS region transcription start site region 156681
D19Mit53 19 45151909 to 45152019 110 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 53
Femwf11 19 45151909 to 45152019 110 QTL femur work to failure 11
Cpgi10941 19 45153206 to 45154746 1540 CpG island CpG island 10941
Tlx1os 19 45154057 to 45159304 5247 - antisense lncRNA gene T cell leukemia, homeobox 1, opposite strand
Cpgi10942 19 45155791 to 45156280 489 CpG island CpG island 10942
Cpgi10943 19 45158978 to 45159428 450 CpG island CpG island 10943
Tssr159548 19 45159302 to 45159312 10 - TSS region transcription start site region 159548
Cpgi10944 19 45163188 to 45163339 151 CpG island CpG island 10944
Cpgi10945 19 45176939 to 45177111 172 CpG island CpG island 10945
Cpgi10946 19 45208265 to 45208502 237 CpG island CpG island 10946
Cpgi10947 19 45221272 to 45221533 261 CpG island CpG island 10947
Cpgi10948 19 45223824 to 45224403 579 CpG island CpG island 10948
Cpgi10949 19 45229179 to 45229738 559 CpG island CpG island 10949
Cpgi10950 19 45230106 to 45230479 373 CpG island CpG island 10950
Cpgi10951 19 45230930 to 45231883 953 CpG island CpG island 10951
Lbx1 19 45232684 to 45235812 3128 - protein coding gene ladybird homeobox 1
Del(19Lbx1-Poll)6Fsp 19 45232684 to 45560531 327847 chromosomal deletion deletion, Chr 19, Francois Spitz 6
Dp(19Lbx1-Fbxw4)3Fsp 19 45232684 to 45660312 427628 chromosomal duplication duplication, Chr 19, Francois Spitz 3
Dp(19Lbx1-Fgf8)2Fsp 19 45232684 to 45742915 510231 chromosomal duplication duplication, Chr 19, Francois Spitz 2
Cpgi10952 19 45233252 to 45234417 1165 CpG island CpG island 10952
Cpgi10953 19 45234649 to 45236931 2282 CpG island CpG island 10953
Tssr156682 19 45235605 to 45235610 5 + TSS region transcription start site region 156682
Tssr159549 19 45236827 to 45236872 45 - TSS region transcription start site region 159549
Cpgi10954 19 45244117 to 45244496 379 CpG island CpG island 10954
Cpgi10955 19 45248634 to 45248971 337 CpG island CpG island 10955
D19Dcr87 19 45268738 to 45268832 94 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 87
Cpgi10956 19 45293585 to 45293907 322 CpG island CpG island 10956
Gm29595 19 45300458 to 45303246 2788 - lincRNA gene predicted gene 29595
Cpgi10957 19 45300987 to 45301422 435 CpG island CpG island 10957
Cpgi10958 19 45301518 to 45302486 968 CpG island CpG island 10958
Gm29593 19 45311300 to 45312247 947 - lincRNA gene predicted gene 29593
Gm29594 19 45317893 to 45318429 536 + lincRNA gene predicted gene 29594
Gm28578 19 45329629 to 45338323 8694 - lincRNA gene predicted gene 28578
Cpgi10959 19 45329782 to 45329964 182 CpG island CpG island 10959
Tssr159550 19 45338314 to 45338324 10 - TSS region transcription start site region 159550
Cpgi10960 19 45339416 to 45339586 170 CpG island CpG island 10960
Tssr159551 19 45352812 to 45352817 5 - TSS region transcription start site region 159551
1700016H03Rik 19 45363213 to 45363649 436 - antisense lncRNA gene RIKEN cDNA 1700016H03 gene
Cpgi10961 19 45363397 to 45364313 916 CpG island CpG island 10961
Btrc 19 45363734 to 45530013 166279 + protein coding gene beta-transducin repeat containing protein
Tssr156683 19 45363744 to 45363831 87 + TSS region transcription start site region 156683
Tssr156684 19 45364078 to 45364111 33 + TSS region transcription start site region 156684
Tssr156685 19 45364189 to 45364204 15 + TSS region transcription start site region 156685
Gm18104 19 45396765 to 45397796 1031 - pseudogene predicted gene, 18104
Tssr159552 19 45441814 to 45441853 39 - TSS region transcription start site region 159552
Tssr156686 19 45445460 to 45445542 82 + TSS region transcription start site region 156686
Tssr156687 19 45445548 to 45445558 10 + TSS region transcription start site region 156687
Gm6807 19 45450308 to 45451195 887 - pseudogene predicted gene 6807
Tssr159553 19 45451211 to 45451237 26 - TSS region transcription start site region 159553
Tssr156688 19 45472732 to 45472741 9 + TSS region transcription start site region 156688
Tssr156689 19 45472755 to 45472771 16 + TSS region transcription start site region 156689
Tssr156690 19 45472795 to 45472813 18 + TSS region transcription start site region 156690
Cpgi10962 19 45476009 to 45476268 259 CpG island CpG island 10962
Cpgi10963 19 45507641 to 45507965 324 CpG island CpG island 10963
Tssr156691 19 45527365 to 45527394 29 + TSS region transcription start site region 156691
Tssr156692 19 45528191 to 45528208 17 + TSS region transcription start site region 156692
Cpgi10964 19 45541191 to 45542174 983 CpG island CpG island 10964
Gm41856 19 45542766 to 45544997 2231 - lncRNA gene predicted gene, 41856
Gm19639 19 45544596 to 45546346 1750 + lncRNA gene predicted gene, 19639
Cpgi10965 19 45544611 to 45545405 794 CpG island CpG island 10965
Tssr5534 19 45545336 to 45545345 9 + TSS region transcription start site region 5534
Tssr156693 19 45545356 to 45545367 11 + TSS region transcription start site region 156693
D19Mit17 19 45551600 to 45551739 139 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 17
Del(19Poll-Fgf8)5Fsp 19 45552275 to 45742915 190640 chromosomal deletion deletion, Chr 19, Francois Spitz 5
Del(19Poll-Fbxw4)4Fsp 19 45552275 to 45660312 108037 chromosomal deletion deletion, Chr 19, Francois Spitz 4
Poll 19 45552275 to 45560531 8256 - protein coding gene polymerase (DNA directed), lambda
Tssr159554 19 45560508 to 45560532 24 - TSS region transcription start site region 159554
Cpgi10966 19 45560559 to 45560838 279 CpG island CpG island 10966
Tssr156694 19 45560569 to 45560644 75 + TSS region transcription start site region 156694
Dpcd 19 45560590 to 45578287 17697 + protein coding gene deleted in primary ciliary dyskinesia
Gm17018 19 45560615 to 45579763 19148 + protein coding gene predicted gene 17018
Tssr156695 19 45575111 to 45575119 8 + TSS region transcription start site region 156695
Tssr156696 19 45575121 to 45575130 9 + TSS region transcription start site region 156696
Tssr156697 19 45575140 to 45575162 22 + TSS region transcription start site region 156697
Fbxw4 19 45578254 to 45660312 82058 - protein coding gene F-box and WD-40 domain protein 4
Tssr159555 19 45591633 to 45591638 5 - TSS region transcription start site region 159555
Tssr159556 19 45591780 to 45591815 35 - TSS region transcription start site region 159556
Tssr159557 19 45591820 to 45591878 58 - TSS region transcription start site region 159557
Tssr159558 19 45591899 to 45591910 11 - TSS region transcription start site region 159558
Tssr159559 19 45591914 to 45591935 21 - TSS region transcription start site region 159559
Tssr159560 19 45591972 to 45591975 3 - TSS region transcription start site region 159560
Tssr159561 19 45591998 to 45592004 6 - TSS region transcription start site region 159561
Tssr159562 19 45631086 to 45631106 20 - TSS region transcription start site region 159562
Tssr159563 19 45631122 to 45631157 35 - TSS region transcription start site region 159563
Cpgi10967 19 45659282 to 45660756 1474 CpG island CpG island 10967
Tssr159564 19 45660460 to 45660493 33 - TSS region transcription start site region 159564