Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:40381820-40641823

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sorbs1 19 40294753 to 40513779 219026 - protein coding gene sorbin and SH3 domain containing 1
Tssr159182 19 40382572 to 40382600 28 - TSS region transcription start site region 159182
Tssr159183 19 40382798 to 40382815 17 - TSS region transcription start site region 159183
Tssr159184 19 40382858 to 40382873 15 - TSS region transcription start site region 159184
Tssr159185 19 40382890 to 40382893 3 - TSS region transcription start site region 159185
Tssr159186 19 40383137 to 40383146 9 - TSS region transcription start site region 159186
Cpgi10815 19 40395401 to 40395564 163 CpG island CpG island 10815
Tssr159187 19 40405767 to 40405798 31 - TSS region transcription start site region 159187
Tssr159188 19 40406813 to 40406827 14 - TSS region transcription start site region 159188
Tssr159189 19 40415293 to 40415314 21 - TSS region transcription start site region 159189
9530039L23Rik 19 40416248 to 40416869 621 unclassified gene RIKEN cDNA 9530039L23 gene
Tssr159190 19 40450184 to 40450204 20 - TSS region transcription start site region 159190
3010085J16Rik 19 40458212 to 40458964 752 protein coding gene RIKEN cDNA 3010085J16 gene
5730409N24Rik 19 40472754 to 40474429 1675 unclassified gene RIKEN cDNA 5730409N24 gene
9130009M17Rik 19 40474596 to 40476538 1942 unclassified gene RIKEN cDNA 9130009M17 gene
Tssr5505 19 40476535 to 40476570 35 - TSS region transcription start site region 5505
Tssr159191 19 40487541 to 40487566 25 - TSS region transcription start site region 159191
Tssr159192 19 40487568 to 40487591 23 - TSS region transcription start site region 159192
Tssr159193 19 40496998 to 40497005 7 - TSS region transcription start site region 159193
Tssr159194 19 40497013 to 40497024 11 - TSS region transcription start site region 159194
Tssr159195 19 40508997 to 40509014 17 - TSS region transcription start site region 159195
Tssr159196 19 40509046 to 40509059 13 - TSS region transcription start site region 159196
Tssr159197 19 40511820 to 40511823 3 - TSS region transcription start site region 159197
Tssr159198 19 40512081 to 40512086 5 - TSS region transcription start site region 159198
Cpgi10816 19 40512913 to 40514093 1180 CpG island CpG island 10816
Tssr159199 19 40513714 to 40513792 78 - TSS region transcription start site region 159199
Tssr159200 19 40513833 to 40513880 47 - TSS region transcription start site region 159200
D19Jpk1 19 40545423 to 40545582 159 DNA segment DNA segment, Chr 19, Japan, Kominami 1
Aldh18a1 19 40550257 to 40588463 38206 - protein coding gene aldehyde dehydrogenase 18 family, member A1
Gm15801 19 40560537 to 40561058 521 - pseudogene predicted gene 15801
Tssr159201 19 40561746 to 40561764 18 - TSS region transcription start site region 159201
Tssr159202 19 40564973 to 40564987 14 - TSS region transcription start site region 159202
Tssr159203 19 40564995 to 40565013 18 - TSS region transcription start site region 159203
Tssr159204 19 40565042 to 40565058 16 - TSS region transcription start site region 159204
Cpgi10817 19 40587826 to 40588678 852 CpG island CpG island 10817
Tssr159205 19 40588338 to 40588371 33 - TSS region transcription start site region 159205
Tssr159206 19 40588374 to 40588426 52 - TSS region transcription start site region 159206
Tssr159207 19 40588428 to 40588439 11 - TSS region transcription start site region 159207
Tssr159208 19 40588453 to 40588464 11 - TSS region transcription start site region 159208
Tssr159209 19 40588470 to 40588471 1 - TSS region transcription start site region 159209
Tssr159210 19 40588489 to 40588502 13 - TSS region transcription start site region 159210
Gm27042 19 40589435 to 40594862 5427 + lincRNA gene predicted gene, 27042
Tctn3 19 40596446 to 40612233 15787 - protein coding gene tectonic family member 3
Cpgi10818 19 40611631 to 40612520 889 CpG island CpG island 10818
Tssr159211 19 40612160 to 40612255 95 - TSS region transcription start site region 159211
Tssr156370 19 40612356 to 40612373 17 + TSS region transcription start site region 156370
Entpd1 19 40612366 to 40741602 129236 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 1
Tssr156371 19 40612392 to 40612407 15 + TSS region transcription start site region 156371
Gm16027 19 40615886 to 40616643 757 + pseudogene predicted gene 16027
Gm8783 19 40622460 to 40622981 521 + pseudogene predicted pseudogene 8783
Tssr5506 19 40637775 to 40637784 9 - TSS region transcription start site region 5506
Tssr159212 19 40638729 to 40638738 9 - TSS region transcription start site region 159212
Tssr159213 19 40638766 to 40638775 9 - TSS region transcription start site region 159213
Tssr156372 19 40638851 to 40638854 3 + TSS region transcription start site region 156372
Tssr156373 19 40640055 to 40640058 3 + TSS region transcription start site region 156373