Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:3658112-3878207

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrp5 19 3584828 to 3686564 101736 - protein coding gene low density lipoprotein receptor-related protein 5
Cpgi10369 19 3685766 to 3687301 1535 CpG island CpG island 10369
Gm36672 19 3686410 to 3692435 6025 + protein coding gene predicted gene, 36672
Tssr5400 19 3686499 to 3686506 7 - TSS region transcription start site region 5400
Tssr157400 19 3686523 to 3686547 24 - TSS region transcription start site region 157400
Tssr157401 19 3686549 to 3686586 37 - TSS region transcription start site region 157401
Gm36608 19 3689236 to 3708226 18990 - lncRNA gene predicted gene, 36608
Cpgi10370 19 3707998 to 3708917 919 CpG island CpG island 10370
Tssr154186 19 3708287 to 3708395 108 + TSS region transcription start site region 154186
1810055G02Rik 19 3708333 to 3717881 9548 + protein coding gene RIKEN cDNA 1810055G02 gene
Gm36787 19 3712777 to 3744426 31649 - protein coding gene predicted gene, 36787
Cpgi10371 19 3719243 to 3719772 529 CpG island CpG island 10371
Gm36871 19 3719885 to 3721369 1484 + lncRNA gene predicted gene, 36871
Gm2141 19 3730432 to 3731047 615 - pseudogene predicted gene 2141
Tssr157402 19 3744374 to 3744392 18 - TSS region transcription start site region 157402
Cpgi10372 19 3767246 to 3769272 2026 CpG island CpG island 10372
Tssr154187 19 3767361 to 3767384 23 + TSS region transcription start site region 154187
Tssr154188 19 3767397 to 3767425 28 + TSS region transcription start site region 154188
Kmt5b 19 3767421 to 3818303 50882 + protein coding gene lysine methyltransferase 5B
Tssr154189 19 3767867 to 3767921 54 + TSS region transcription start site region 154189
Tssr154190 19 3767953 to 3767970 17 + TSS region transcription start site region 154190
Tssr154191 19 3768112 to 3768207 95 + TSS region transcription start site region 154191
Tssr157403 19 3768694 to 3768709 15 - TSS region transcription start site region 157403
Tssr154192 19 3769104 to 3769112 8 + TSS region transcription start site region 154192
Tssr154193 19 3787367 to 3787373 6 + TSS region transcription start site region 154193
Gm16066 19 3798615 to 3852419 53804 - unclassified non-coding RNA gene predicted gene 16066
Gm19209 19 3821562 to 3822385 823 - pseudogene predicted gene, 19209
Cpgi10373 19 3851047 to 3852700 1653 CpG island CpG island 10373
Chka 19 3851773 to 3894369 42596 + protein coding gene choline kinase alpha
Tssr154194 19 3851800 to 3851811 11 + TSS region transcription start site region 154194
Tssr154195 19 3851823 to 3851840 17 + TSS region transcription start site region 154195
Tssr154196 19 3851855 to 3851860 5 + TSS region transcription start site region 154196
Tssr154197 19 3851927 to 3851934 7 + TSS region transcription start site region 154197
Tssr154198 19 3851939 to 3851948 9 + TSS region transcription start site region 154198
Tssr154199 19 3851957 to 3851962 5 + TSS region transcription start site region 154199
Tssr154200 19 3851972 to 3851981 9 + TSS region transcription start site region 154200