Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:12479492-12649508

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dtx4 19 12466341 to 12501996 35655 - protein coding gene deltex 4, E3 ubiquitin ligase
Tssr158422 19 12487040 to 12487060 20 - TSS region transcription start site region 158422
Tssr158423 19 12491938 to 12491983 45 - TSS region transcription start site region 158423
Cpgi10642 19 12500806 to 12502226 1420 CpG island CpG island 10642
Tssr155333 19 12501178 to 12501198 20 + TSS region transcription start site region 155333
Tssr158424 19 12501440 to 12501454 14 - TSS region transcription start site region 158424
Tssr158425 19 12501478 to 12501505 27 - TSS region transcription start site region 158425
Tssr158426 19 12501547 to 12501630 83 - TSS region transcription start site region 158426
Tssr158427 19 12501633 to 12501672 39 - TSS region transcription start site region 158427
Tssr158428 19 12501813 to 12501822 9 - TSS region transcription start site region 158428
Tssr158429 19 12501836 to 12501847 11 - TSS region transcription start site region 158429
Tssr158430 19 12501849 to 12501871 22 - TSS region transcription start site region 158430
Tssr158431 19 12501902 to 12501931 29 - TSS region transcription start site region 158431
Tssr158432 19 12501935 to 12501973 38 - TSS region transcription start site region 158432
Tssr5450 19 12502064 to 12502079 15 - TSS region transcription start site region 5450
Tssr158433 19 12502082 to 12502152 70 - TSS region transcription start site region 158433
Gm31208 19 12517921 to 12524338 6417 - lncRNA gene predicted gene, 31208
Gm47243 19 12519800 to 12523576 3776 + lincRNA gene predicted gene, 47243
Tssr158434 19 12526381 to 12526392 11 - TSS region transcription start site region 158434
Tssr158435 19 12526423 to 12526441 18 - TSS region transcription start site region 158435
Tssr158436 19 12527095 to 12527104 9 - TSS region transcription start site region 158436
Tssr158437 19 12527543 to 12527558 15 - TSS region transcription start site region 158437
Tssr158438 19 12527559 to 12527577 18 - TSS region transcription start site region 158438
Tssr158439 19 12528202 to 12528216 14 - TSS region transcription start site region 158439
Gm6545 19 12528763 to 12530519 1756 - pseudogene predicted gene 6545
Tssr158440 19 12531930 to 12531980 50 - TSS region transcription start site region 158440
Gm47242 19 12539588 to 12540823 1235 - lincRNA gene predicted gene, 47242
Tssr158441 19 12540749 to 12540760 11 - TSS region transcription start site region 158441
Tssr158442 19 12540785 to 12540794 9 - TSS region transcription start site region 158442
Tssr158443 19 12540815 to 12540831 16 - TSS region transcription start site region 158443
Tssr155334 19 12564463 to 12564490 27 + TSS region transcription start site region 155334
Tssr155335 19 12564492 to 12564508 16 + TSS region transcription start site region 155335
Tssr155336 19 12564524 to 12564541 17 + TSS region transcription start site region 155336
Gm16274 19 12568235 to 12568826 591 - pseudogene predicted gene 16274
Fam111a 19 12573072 to 12589769 16697 + protein coding gene family with sequence similarity 111, member A
Tssr155337 19 12573508 to 12573542 34 + TSS region transcription start site region 155337
Tssr158444 19 12574226 to 12574252 26 - TSS region transcription start site region 158444
Tssr155338 19 12574397 to 12574402 5 + TSS region transcription start site region 155338
Tssr155339 19 12585864 to 12585868 4 + TSS region transcription start site region 155339
A330040F15Rik 19 12585868 to 12596566 10698 - lncRNA gene RIKEN cDNA A330040F15 gene
Cpgi10643 19 12595616 to 12596663 1047 CpG island CpG island 10643
Tssr155340 19 12595686 to 12595701 15 + TSS region transcription start site region 155340
Tssr155341 19 12595717 to 12595751 34 + TSS region transcription start site region 155341
4122401K19Rik 19 12595748 to 12598308 2560 unclassified non-coding RNA gene RIKEN cDNA 4122401K19 gene
Tssr155342 19 12595763 to 12595784 21 + TSS region transcription start site region 155342
D19Mit79 19 12597623 to 12597757 134 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 79
Tssr155343 19 12599928 to 12599939 11 + TSS region transcription start site region 155343
Tssr155344 19 12599953 to 12600010 57 + TSS region transcription start site region 155344
Gm4952 19 12599984 to 12627616 27632 + protein coding gene predicted gene 4952
Tssr155345 19 12600044 to 12600051 7 + TSS region transcription start site region 155345
Tssr155346 19 12625425 to 12625426 1 + TSS region transcription start site region 155346
Tssr155347 19 12627657 to 12627666 9 + TSS region transcription start site region 155347
Tssr155348 19 12633303 to 12633325 22 + TSS region transcription start site region 155348
Glyat 19 12633308 to 12651737 18429 + protein coding gene glycine-N-acyltransferase
Tssr155349 19 12633329 to 12633352 23 + TSS region transcription start site region 155349
Tssr155350 19 12633356 to 12633369 13 + TSS region transcription start site region 155350
Tssr155351 19 12633507 to 12633525 18 + TSS region transcription start site region 155351